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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000460 ID=TCONS_00000460|Name=TCONS_00000460|organism=Clytia hemisphaerica|type=transcript|length=1651bp
AACGATTTGTCATTAATTGAAGTTAACTACTCGAATTGATAAGAGGTCTT
CCATtctgcagattttttttctaaaaattgTGCTATCACAGCAAGTTCCG
AACATGAGTTCATTTTTACCGCCCAGTAAAGCACCGGAGGCGTACCGCCC
TTTAAACTACACGCCAACGTCATTCGTAACCAACTTCAAAGAAATGTCAC
AACAAATCGActctaacaacaacaacaacaacaacaataaccCTCATGAA
AGCGAAGGAAAATTCTCACCTCGACCAGCGACGCAATTTTCACCAATGGG
CGATTTACGATCACACCCTTCGACGCAAGATACACATCCATTCAAAACCT
TCGACGACTCGAAATCCTTTTTGAATAATAATACGCCAAATGGTTCAATG
CCCGAACAAGATTCAATTTCATCGTCACTACAGTCTTTCCACTCTAGTGG
ACTTCCAACATCATATACTTCGTCTTACAATAACAACTCTATGCAAACGA
CCCTCTCTTCGCCGTCAAGTATCACGTCAAATATGTCGAGAAGCTTTTCA
TCCTCATCTTACGTTAAGCAGGAATCagatgaagaagatgaaggAGATCT
TACGCAATCGAAGAACGGTAAAGGTGGAAAATTACCTCGAAAACCACGAA
CAATCTTCACTAGTCAACAGTTACGCGAACTCAACCGTGCTTTCGAACGC
ACGCATTACCTCTCGTTACCTGAACGCGCAGAATTAGCACACGCACTCGG
TTTAACTCAAACCCAAATCAAAATCTGGTTCCAAAACAAGAGATCTAAAT
TCAAGAAAATCATCAAAGCTAATGGAGGACAAATGCCACCGCCATCAAGC
CTCGTTTCTGGTGGCAATCCTGGTTTATGGCCGTCTGGTTATGGTGAGAA
AAGCTTTGGCGGACCACCAATGCCACACTTGAGTCCATTCTCACCACCAC
CATCATCGCATAGTTCGGTACCCGGTGATTCTTGGTACTACCGGATGCAA
TCGGCCGGTGGATACGGAAGTCACGAAACCATGTTTCCATACGGTGGCAC
AAGCGGAACTGATGTTCGAACAACTCGGCCTAATTTCTCTTATCATATGT
AGTGTTTAAACTAATCACCTTTCTTAACCCTTAGTAACTGTCTGTTTCTG
TCCtgagtatatatttttttcactaaaaattcacaaattttagttttatc
tttttttttaacttgtgTTCtacgaaaattgtaaaaaaaaaagtaacTTC
AATATTATATTTTGGAAACACTTTTAATCATTGTATAGATGGACAAGTGA
AAATATCGAATAGTTTATTTTGTTCgctattttaagttttttttgaagag
caaatatttttTAGCCATGGAAATAGTTTAAAAATGGTATCGAATTAGTT
TTTTTGTATATATGTACATAAATTATCTTACTACAACACACAGTATCAAT
ATTttacaatgaaataaaaatccGAAAGAACGAAATAGCTAAACCTCTCA
TACAACTATGTTCCAGCTTCTAGTGTTTCGATCGAATTTTTCCCCTCGTT
AACTctattcaaactaggcttttaggaGTGGTTCCTGTAACAACCCTTAA
CTTTATCTATTGGGTCTTTTTGGACGAAATTTGGTACATAAGATCTTTGT
C Run BLAST on NCBI transcript from alignment at sc0000002:1022926..1025647+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000460 ID=TCONS_00000460|Name=TCONS_00000460|organism=Clytia hemisphaerica|type=transcript|length=2722bp|location=Sequence derived from alignment at sc0000002:1022926..1025647+ (Clytia hemisphaerica)
AACGATTTGTCATTAATTGAAGTTAACTACTCGAATTGATAAGAGGTCTT
CCATtctgcagattttttttctaaaaattggtatgaaattttcataaatt
tgtttataattattttgttAAACGGTACTATATATCACAGGTAGATCATT
AGTAATTGATTATTTTCATTCTTAAGAATTACTTCGGTAATTATATATGA
GGAGGGGCAGCATAATGCTCCGTCAACCATCCAAAAATGAGAAATCTCTT
AGTCCAActaataaacaaaaattaatgtttaatTAATATTCTTTCTTCTA
TTTCACAGTGCTATCACAGCAAGTTCCGAACATGAGTTCATTTTTACCGC
CCAGTAAAGCACCGGAGGCGTACCGCCCTTTAAACTACACGCCAACGTCA
TTCGTAACCAACTTCAAAGAAATGTCACAACAAATCGActctaacaacaa
caacaacaacaacaataaccCTCATGAAAGCGAAGGAAAATTCTCACCTC
GACCAGCGACGCAATTTTCACCAATGGGCGATTTACGATCACACCCTTCG
ACGCAAGATACACATCCATTCAAAACCTTCGACGACTCGAAATCCTTTTT
GAATAATAATACGCCAAATGGTTCAATGCCCGAACAAGATTCAATTTCAT
CGTCACTACAGTCTTTCCACTCTAGTGGACTTCCAACATCATATACTTCG
TCTTACAATAACAACTCTATGCAAACGACCCTCTCTTCGCCGTCAAGTAT
CACGTCAAATATGTCGAGAAGCTTTTCATCCTCATCTTACGTTAAGCAGG
AATCagatgaagaagatgaaggAGGTAAAATGTTTATTTATATTAAGGAG
ATAATATTGACTTGTTGGAACTAAAATTATCTTCTTTGAATTTTAATTGA
CACTGATATCTTTCATAACGATAATTTTTAGCAGGTTTTTAGCAGAGAAA
AACGTCTTAGCTACATTGAACATTTTGCAGCAAAAATGTAGGAGGTTTTC
CTTTAATTTTCAATGAATGTCATTAACATGATTAGGAATAATTAGATGGG
TTGGTAGCTCCTAATTTAATTGCATTTAACATTTGACGTTGGTCATGTTT
TTTTCCCAAAGCTTAAAAATTGTGATAAGTCAAAATGATGCATTCAAACA
ATTCGCGATAAAGATCACCATTAAAGTTTTTAATCACCTCCTTGCCATAA
ATTATCACAAAGATAATCAAAACATAAGAATTTCGTAAACAATCAACCAT
TTCTATTTCCAGCGTTAATATCAGATAATTTCAATGATAAAATTATGAAA
CCTTGCATGTgaaaaaaacacgaaaacaTGTCCTAACTTTTTCCTTAATG
TTGTATTTGTGGTAGAATGGGCGCCTTAATAAAACAGTTAATTGTCGACT
TTGCATTTGAGTAATGTTTTTCCGTTTTACGAAGAGAAAAAGTCTTAACG
ACCTGTGACCAATTTAAGACTTTTGAATAGCTATTAAAAAATACAGGACG
TTAAAATTAATGACCTCTTTTCATTACCTATTTgaaattgattattttta
ttgaaactttcctaatttggaAAAAAGACTTTCTCAAGTGGGTATATTGT
TTTTAATATCCGATAATTGTTGGAAAAATTAATgagtaattcttttcaat
tttttcatatcTTATAGATCTTACGCAATCGAAGAACGGTAAAGGTGGAA
AATTACCTCGAAAACCACGAACAATCTTCACTAGTCAACAGTTACGCGAA
CTCAACCGTGCTTTCGAACGCACGCATTACCTCTCGTTACCTGAACGCGC
AGAATTAGCACACGCACTCGGTTTAACTCAAACCCAAATCAAAATCTGGT
TCCAAAACAAGAGATCTAAATTCAAGAAAATCATCAAAGCTAATGGAGGA
CAAATGCCACCGCCATCAAGCCTCGTTTCTGGTGGCAATCCTGGTTTATG
GCCGTCTGGTTATGGTGAGAAAAGCTTTGGCGGACCACCAATGCCACACT
TGAGTCCATTCTCACCACCACCATCATCGCATAGTTCGGTACCCGGTGAT
TCTTGGTACTACCGGATGCAATCGGCCGGTGGATACGGAAGTCACGAAAC
CATGTTTCCATACGGTGGCACAAGCGGAACTGATGTTCGAACAACTCGGC
CTAATTTCTCTTATCATATGTAGTGTTTAAACTAATCACCTTTCTTAACC
CTTAGTAACTGTCTGTTTCTGTCCtgagtatatatttttttcactaaaaa
ttcacaaattttagttttatctttttttttaacttgtgTTCtacgaaaat
tgtaaaaaaaaaagtaacTTCAATATTATATTTTGGAAACACTTTTAATC
ATTGTATAGATGGACAAGTGAAAATATCGAATAGTTTATTTTGTTCgcta
ttttaagttttttttgaagagcaaatatttttTAGCCATGGAAATAGTTT
AAAAATGGTATCGAATTAGTTTTTTTGTATATATGTACATAAATTATCTT
ACTACAACACACAGTATCAATATTttacaatgaaataaaaatccGAAAGA
ACGAAATAGCTAAACCTCTCATACAACTATGTTCCAGCTTCTAGTGTTTC
GATCGAATTTTTCCCCTCGTTAACTctattcaaactaggcttttaggaGT
GGTTCCTGTAACAACCCTTAACTTTATCTATTGGGTCTTTTTGGACGAAA
TTTGGTACATAAGATCTTTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000460-exon-sc0000002-1491911889:1022926..1023005 | TCONS_00000460-exon-sc0000002-1491911889:1022926..1023005 | Clytia hemisphaerica | exon |
| TCONS_00000460-exon-sc0000002-1510915933:1022926..1023005 | TCONS_00000460-exon-sc0000002-1510915933:1022926..1023005 | Clytia hemisphaerica | exon |
| TCONS_00000460-exon-sc0000002-1575043694:1022926..1023005 | TCONS_00000460-exon-sc0000002-1575043694:1022926..1023005 | Clytia hemisphaerica | exon |
| TCONS_00000460-exon-sc0000002-1491911889:1023234..1023749 | TCONS_00000460-exon-sc0000002-1491911889:1023234..1023749 | Clytia hemisphaerica | exon |
| TCONS_00000460-exon-sc0000002-1510915933:1023234..1023749 | TCONS_00000460-exon-sc0000002-1510915933:1023234..1023749 | Clytia hemisphaerica | exon |
| TCONS_00000460-exon-sc0000002-1575043694:1023234..1023749 | TCONS_00000460-exon-sc0000002-1575043694:1023234..1023749 | Clytia hemisphaerica | exon |
| TCONS_00000460-exon-sc0000002-1491911889:1024593..1025647 | TCONS_00000460-exon-sc0000002-1491911889:1024593..1025647 | Clytia hemisphaerica | exon |
| TCONS_00000460-exon-sc0000002-1510915933:1024593..1025647 | TCONS_00000460-exon-sc0000002-1510915933:1024593..1025647 | Clytia hemisphaerica | exon |
| TCONS_00000460-exon-sc0000002-1575043694:1024593..1025647 | TCONS_00000460-exon-sc0000002-1575043694:1024593..1025647 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1022926..1025647 + |
Blast
BLAST of TCONS_00000460 vs. Swiss-Prot (Human)
Match: DLX1 (Homeobox protein DLX-1 OS=Homo sapiens GN=DLX1 PE=1 SV=3) HSP 1 Score: 109.768 bits (273), Expect = 1.058e-26 Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 2
Query: 614 NGKGGKLPRKPRTIFTSQQLRELNRAFERTHYLSLPERAELAHALGLTQTQIKIWFQNKRSKFKKIIKANGGQM 835
NGKG K+ RKPRTI++S QL+ LNR F++T YL+LPERAELA +LGLTQTQ+KIWFQNKRSKFKK++K G +
Sbjct: 122 NGKGKKI-RKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLMKQGGAAL 194
The following BLAST results are available for this feature:
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