Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000451 ID=TCONS_00000451|Name=TCONS_00000451|organism=Clytia hemisphaerica|type=transcript|length=905bpRun BLAST on NCBI protein sequence of TCONS_00000451-protein >TCONS_00000451-protein ID=TCONS_00000451-protein|Name=TCONS_00000451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp NPEKLAQTSEIRGESEKLEDTRELMKAKEKEQAVKKNSTKKVSNTRHSRFRun BLAST on NCBI transcript from alignment at sc0000002:963004..970642+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000451 ID=TCONS_00000451|Name=TCONS_00000451|organism=Clytia hemisphaerica|type=transcript|length=7639bp|location=Sequence derived from alignment at sc0000002:963004..970642+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:963004..970642+ >TCONS_00000451 ID=TCONS_00000451|Name=TCONS_00000451|organism=Clytia hemisphaerica|type=CDS|length=9933bp|location=Sequence derived from alignment at sc0000002:963004..970642+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00000451 vs. Swiss-Prot (Human)
Match: TIM (Protein timeless homolog OS=Homo sapiens GN=TIMELESS PE=1 SV=2) HSP 1 Score: 235.343 bits (599), Expect = 2.142e-69 Identity = 128/300 (42.67%), Postives = 196/300 (65.33%), Query Frame = 3 Query: 3 NPEKLAQTSEIRGESEKLEDTRELMKAKEKEQAVKKNSTKKVSNTRHSRFGGSFWVSNMKGIGHKNTLVHHQHVSDANDISFDHKKYRAKVPVRKREAKDNIVERRSTLTIRXXXXXXXXXXXXDCYNPLMRQVKENITSKRSQENDETFYMWALRFFMAFNRVHSFKVEYVSETLNMNIFYQTLKQINHYYDNFFMHKRGGWEPWQRRLHYGIQAYKELLTYIAHMDTSHDTILKDASSIIKNNVFYHEEYRSIFLVLIRHYDAHKQSKKYLADLIDTFHVFLKMLERFCSNKGAIIIK 902 NPE+LA + R E+ D EL +++E A KK + N RHSRFGGS+ V +K IG ++ L+ H+ + + + S D K KVP R++ A++ ++RRS L +RL L++FC +FLE+CYN LM VK+++ +++Q++DET+YMWAL FFMAFNR SF+ VSETL++ F+ + + +YY+ + R W RR+H ++AY+ELL + MD S D ++++S IIKNN+FY EYR +FL L R +D Q + +L DL++T H+FLKMLERFC ++G ++++ Sbjct: 230 NPEQLAGVGQGRLAQERSADFAELEVLRQREMAEKKTRALQRGN-RHSRFGGSYIVQGLKSIGERD-LIFHKGLHNLRNYSSDLGKQPKKVPKRRQAARELSIQRRSALNVRLFLRDFCSEFLENCYNRLMGSVKDHLLREKAQQHDETYYMWALAFFMAFNRAASFRPGLVSETLSVRTFHFIEQNLTNYYE-MMLTDRKEAASWARRMHLALKAYQELLATVNEMDISPDEAVRESSRIIKNNIFYVMEYRELFLALFRKFDERCQPRSFLRDLVETTHLFLKMLERFCRSRGNLVVQ 526 The following BLAST results are available for this feature:
BLAST of TCONS_00000451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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