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TCONS_00000449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000449
Unique NameTCONS_00000449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length803

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000449 ID=TCONS_00000449|Name=TCONS_00000449|organism=Clytia hemisphaerica|type=transcript|length=803bp
GGGAAAATTTCTCACCAtgttgtaaatttttgttgttactGCTGATGACT
GCTGCAGACTACAGACTAAATATCTTCTCTCATATATCCATCCAGAATAC
CAAAAGTGCAGTCAAACAACGATGGAGAACACAACAATGGAGATGAACAC
AGAATTAGTCTGTGTGATGGCCAGTCTTGGCTATCATGATGACACGGACT
ACTTTCTGGGTGAAGATTGTCTTCCAAGTCTTAAAGATTTGATTCGTTTC
TTGAAACATGAAGATGAATCTTGTAACATCAGAAGACAAATGGGACATTC
TCAACTGATTCAAAAGGACCTTCTTCCAATGTTCATGTTTCATGCTGAAA
ATGCAGAACTCATTGATATTGTTGTCAGATTGCTTGTCAATTTGACCTCA
CCTGCAGATATTTGCTTCAATAAGAATCAGAGTGAGCTAGCTGAAGAATC
TGCCCCCACAAAAATGTCAAACACTTATTCTGCAAAGCAAATGGAAGTTG
TTGGCCATCTTCAAGGATACAAAGAGGCTTTTGTAAATGAAAAGGCAATG
AGTGCAATTGCTGCTCAAATAGGAAAAGTTTTACAGATgGAAATGGAAGA
TCGAGGAGAAGACGAATATTTGTTATTTGAACGATTGCTTCTCCTGCTGA
GAAACATTTTACACGTTCCTGCTTCACCAGAAGATGAAAAGcgAACTGAT
GATGATGCCTCTCTGCATGATCAAATTTTATGGAGCATGCACTTGAATGG
TATTGATGATTTGTTAGTTTACATTTGTAGCTCGCCAGAAGAGAGTCGCT
GGG
Run BLAST on NCBI

protein sequence of TCONS_00000449-protein

>TCONS_00000449-protein ID=TCONS_00000449-protein|Name=TCONS_00000449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MENTTMEMNTELVCVMASLGYHDDTDYFLGEDCLPSLKDLIRFLKHEDES
CNIRRQMGHSQLIQKDLLPMFMFHAENAELIDIVVRLLVNLTSPADICFN
KNQSELAEESAPTKMSNTYSAKQMEVVGHLQGYKEAFVNEKAMSAIAAQI
GKVLQMEMEDRGEDEYLLFERLLLLLRNILHVPASPEDEKRTDDDASLHD
QILWSMHLNGIDDLLVYICSSPEESRW
Run BLAST on NCBI

transcript from alignment at sc0000002:953745..962472+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000449 ID=TCONS_00000449|Name=TCONS_00000449|organism=Clytia hemisphaerica|type=transcript|length=8728bp|location=Sequence derived from alignment at sc0000002:953745..962472+ (Clytia hemisphaerica)
GGGAAAATTTCTCACCAtgttgtaaatttttgttgttactGCTGATGACT GCTGCAGACTACAGACTAAATATCTTCTCTCATATATCCATCCAGAATAC CAAAAGTGCAGTCAAACAACGATGGAGGTAAAGTTTTATTTAGTTCTGGC ATCCTGTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTAT AATTTGACgaatcaacgatcgaaccaatctaaccaaatcaaacgcaatcg accgattgaaattcgattgtcaaacgcaatcgaatctcaatcatacgtca aaattctgggtaatattcgctTGGtgcgattgttgttcgactggttcgat cgtcgattccgttcgattgagatcatcTGGCTTTATTCATGCAGCttccc aacctcgtccccgtgtatcccaggctttatttacgttactgattgacgcc agagaataccctggtgttggctgatatgtgagttccccctctcagagggg ggactttttaaaacaatacgtcataaaaaaatctgacgttacaaagttaa actgcaatgcaatggtttcaaacccaggaacaaatgaaatctgacatttt gtttttgaattacgtaatcttacgcgttcaaaaaccagccaatgccaggg tattatctagcgctatcagtaagcatcaaaaagctgataatgcgcagggg GACGAGGTtggcagcttcccaacatccaagctctcaaacatcacaagccg aatgaaatacttccgatttcccgtagaaattatgggATGAACAATCcagg ggtcaatgaatcgacgatcgaacgcaatcgaacgcaatcgaacatcaatc gaacgcaatcgaatatcaatcgaatctgaaaattgcgNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNtgagattcgattgcgttcgacaatcaaa tttcaatcggtcgattgcgttcgatttggttcgactggttcgatcgtcga ttccgttcgattgagattgtctgggtATATAGACctacctaactcttcat acaaaaattacaggaaacgcatatttggactaaaTTACACCCTATGTATG CTGGACGCAAGCACTTCAGCTAACGTCCTGCAAAATCAGCtgtttgaagt ttgcaaaaaaaagccACATatcgtgaagtcgggtaacttgcatcagtgga gggaaacttgcatagccatcaaatcaAAACTGGTCGTTGGGTGTTGTTTA TTaagataaaaacggcaattatacaattattgctcttttcggcaaCTATG AAATGTTAAGTCAGCAGAAATGTGCTGTCCTTatagaggccccccagcgg tttgcgtgatggcgtgatgcgtgatttgggctcttttcactattttttgc ttgatgacaaattttagcgattttcgtgatgcatgatggagaattttttt ttgcttgatgacgtgattaggggtgccgctgggggtgGCGCTGGGGGTGG CGCTGGGGGGCCTCCTTAAGGGCAAAGATAAGgtgtttgaaaaatgtaaa attatatTGAGGGAAAGGTTTTTCAGATCTTTAAATgcgaccttttttta aagaggcagccatgttgaataattatttactccagcataaaaacaatgat acagccatgcataattactgtatcatgcatatttcaaaaattatgcatgg ctgtatcattgtttttatgctgtcgAGTAcataaccagacggtgtcaatc gaacaaatcgaacgctgaatcaatcgaatgcaattgaacgcaatcgaata attgtaattcgattgtcgaacgcaattgaattgcaatcgaatattaccct ggatttgctgttcgattgcttcgattacgttcgattgtattcgattacgt ttgattgttcgtttacgtttgattgatttaattgtattagattttattcc cTTTGGTATGGTACTTCAAGCACTCAGCCACCCAcactaaaaagctctaa cagagtgatccaatttaatttaatttaatcgcaattaAACATattgaaca taatcgtaatcaaacgaaatcgaagattaatccaatgtaattgacaatca atcgaaccaatcgaacatagtcaactatcaatcaaaCCAGTCTAACCTta cttgaacgcaatcgaacacaatcgaatattacccaggaatgggccgttcg attgagattcgattacgttcgacaatcgaatcgcaattatttgatcacgt tcgattacgttcgattgcgattttagtttgaagttgttcgattgacaccg tctggacataGTTATTCATCATGGctacctctttaaaaaaaggtctattt ttcaTTGCTCAATAAGATGAAAAGTTCTGAAATGATATgtaaaaagatcc tgcatcgatgccgaaacacagcttgaagaagaaaacagaacccccgttgt aagtttgtttacattatgACTCAATTTTgttatctgcatttccaacaaaa accagttgaaaacaaaactaaacgagacacagtgggcctacttattGGGA TGGTGTCAAATACCatgtgttcaataataaaatcaacttttctttccaaa aacagcaaaaattgctataaaacggcaattttcatttatttacttttttt acttttctgctgattcagcatgttatcgttgaaaaaattgcctttttCAG CAATAGTTGCCGAAAAGAGAaataattgccgtttttatcGTAAACACCCA ACtgatgactgaccaatcaaagcagcaaaatttcaaaacaagacaCTCTA CGTGTCCACCAAAGCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNCtccctttctttttatcattgttttagatta tgttttaagaatttctgtTGACTTATCTAATGACAagggaatcaaaatta aagttcccCTGCGCAAGCGTAACTGCGGCCTTTTTCTGACCGATCTTGAC TTTGCTGGCGATCTTGCCTTAGTTTCTGAGAgtattcaaaatcttgaaag tcTTCTTCACTCACTTGAAACTTCGGCCAGTCAAGTCGGTCTTTATTGCA ATGCTggaaaaactgaatttatcAGCTCCTCTGGAAATGTTCTCCCTTTA ACTTCCAAGAATGGTGTCAATATCAAACTTGTGAAGGATTTCAAATATCT CGGCTCTCATATTAATAGCTCTgaaaacgattttaaaattaGGAAAGGTC TAGCTTGGAAAGCTTGTAATAAGTTAAACAAGATATGGCATTCTAATTTG TCTAACGCTCttaaacttcaaacttttaGAGGTCTTGTCGAGCCCATTCT TCTATATGGCTCGGAGACTTGGACCATGACAAAAACCATGCTGAAGAGCC TTGATGGCTGCTatacaaatcttttgaaaagagtACAGAATCTTGATTGA CGCAACCATCCAACCCTTCAAGAGATATATCATGGACTCCCAAGAATTTC CTCTGTCCTGACTAGCAGGATGCTCTCTTTCTCAGGTCACTGTTTCCGTG CGAAAAACGAAATGGTGTTCTTACATTGGTGTCCTGCGGGCCCAAGGCGC TCGAGAAAGCGcacttttcttgatattttgaaacgAGAAACAGGGCTAGA GATTGAGGAACTGGGCACTGCAATGGCTGATCGAGAACTGTGGAGGNNNN NNNNNNNNNNNNNNNNNNNNNNNNAAACGAGAAACAGGGCTAGAGATTGA GGAACTGGGCACTGCAATGGCTGATCGAGAACTGTGGAGGGagggttatt gtttgtttccgacctaggtccattcggacctaggtcgaaggatgatgatg atgaaaacaaatgaactacgcagcttcactcgcagctctactctatcata ttcgttttgatttaattttatattttaatgaccagccgggtcattcattt tagggctatgcatgttagcctccactgatacaAGTTACACGATCTCATgg tagaagatctttcaaattcagcatgtgaatagagcagtggggggagcagt aaaaaatacaacttttctattttttccctttttttttaagctctaggaat gaaaataaagggataatgataattgtatactatccactgatgatcaaTTG ATCAcaattttaaccaatcaaacacaatcaatGAAAAGAAACAATCATTG ATACTAAGAATTTTAGAATAGGTTTGATTACCTGTGGATTATTGGAATCA TTTGATATCAAATCAAAAGATTGGTTATTGATGAGTCATTGATTGGGAAA GGTTATTGATTGTATTTAGTATAGCTGGAAAATACTGTTTTTGCAATGAC TAGTCATCGACTGGAAAAGGTTTTTGATTGTATCGAATGGGAGAGTCTGG AAAACactatttttttaagtttgcaaaAGAATTGCAACATAGAATTGTTT TCAAATTACTGTAAGTGTTTGGATCAAgaaaataccgggtgcgccacaaa aaagtttctctctttaaaactaattttctcgaaatctaaaagttttaaac gaatcattcctatttcattagaaagaagaaagataaacttaaattttgat gggtcatttattaaattcgattcatcagatcaaaagttaggctcaattga atgaaaaagttattttcagaaaatgctcgaaactttgaaaatcgagctat caaattttattttaaaattagcAATCAccatagcctttacatgattaaga gcattttttcCGTAACTAAAcacttaaattttgaaactgaagggtcgaaa gggtttagaatcttcatcaaaatcattttaatttacttttaccgaaattt tcctcaaatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNCCCCCTTTAGGGAAAAACAGTTGACCTCTTCA GTCTCAGCCCCCCcccagaaattaaaattttgtttccCTCTccccttttt ggaaaattttttttaaatctctaaCCCACCCTGTAAAAAAGAGACACTAT CCTAACCACTGATGATCCACGGTATTATTTAAAAGCTTTGATTGCTTTGT GCTCTCTTCGCTTGAAATGTTTGACAGATTAAAGATTGACCATCCATGAG AGAGTTCCTGGGCGTTTGTATTTGcgatgttagcttttttaggctcatgc aaataaatggatagaaatagaaataggaAGGTGTTTTCTTACATTATTGC AGGTATCAAATAAATGCATTATATTAGGGGCAAAACCACATTTATTTCAT TCGAAAGTTGAAtatatttgaagatattttcgcGAGGGGGTCCACTGGTC AAAAATCTTTTATAGGCCAAAGACTGACNattgaaacgaaaatactgatg catcatgtaattatgcttctgtttaatttgataggtctatttttaacgtt tttgggcACTTTCAGaaactaacttttttatttaattgagcataactttt gatctactgaatcaaatttaataaatgacccatcaaaatttaagtttatc tttcttctttccgatgaaataagaatggttcttttaaaaatgttatattt caagaaaattagttttaaagagagaaacttttttgtgacgCACCCGGTAG AAACACAAGGttctattttacaaattttttcaaacgttCCAGGAATGAAA ATTAAGGTATAATGATAATTTAATACTAACCATAGTGTCTNGCAGACCCC CCTCACAAAAATGTCTTcaaatacattcaacttttgaatgaaattcATGT GGTTGCTTCCTATAAAAGTTGTCACGGATCCTATGTGATTGAATCCTATA TGTGAtatatgatatttttttgaattactTACAAGCTANattttttttaa atctctaaCCCACCCTGTAAAAAAGAGACACTATCCTAACCACTGATGAT CCACGGTATTATTTAAAAGCTTTGATTGCTTTGTGCTCTCTTCGCTTGAA ATGTTTGACAGATTAAAGATTGACCATCCATGAGAGAGTTCCTGGGCGTT CGTATTTGcgatgttagcttttttaggctcgtgcaaataaatggatagaa atagaaataggaAGGTGTTTTCTTACATTATTGCAGGTATCAAATAAATG CATTTTATTAGGGGAAAAACCACATTTATTTCATTCGAAAGTTGAATAta tttgaagacattttcgCGAGGGGGTCCACTGGTCCAAAATCTTTTATAGG CCAAAGACTGATGTTacttttttacccattttttgcctttaCAGTTTTGC CTGTAACGTCAGTCTTTaaccaataaaaaattttgctagGCCTTAGCAGC AGACCCCCCTCACAAAAATGTCTTcaaatacattcaacttttgaatgaaa ttcATGTGGTTGCTTCCTATAAAAGTTGTCACGGATCCTATATGTGATTG AATCCTATATGTGAtatatgatatttttttgaattacttacaagctaaaa aaATTACTAATCAATATCAAGATCCAAAACCATACATTAATATGCATTGT GAAAAGTTAGTCCAAActatttattaaaatttgagTTCAAAAGATACTAA GTAAAAATGTTTACTTTCTTGCAGAACACAACAATGGAGATGAACACAGA ATTAGTCTGTGTGATGGCCAGTCTTGGCTATCATGATGACACGGACTACT TTCTGGGTGAAGATTGTCTTCCAAGTCTTAAAGATTTGATTCGTTTCTTG AAACATGAAGATGAATCTTGTAACATCAGAAGACAAATGGGACATTCTCA ACTGATTCAAAAGGTATGACAATCTTTCAATTATTATCCATAACAacggt tttattttgaaagctctaATAACCTCTAATCACTAATGTTTTTCATATGC TAATAAATCTTCTGAATTGTTTAGGACCTTCTTCCAATGTTCATGTTTCA TGCTGAAAATGCAGAACTCATTGATATTGTTGTCAGGTATgttaatttta tcattttttactaCTACATTGGCGAAAGAATATGAATTAGATAAAAACAA GACAGCGCAATGCAAAATTTCATTCCTGCAAAACAAGGTTGAAAGAGGCC ATCAAAGATATCAATAAGATTTACAGCTCACAATAGTTGAGATGTCAATG ATTCTACTTACCTTTCAGTCTCCTATAGGTCCATTAACTTGGTGGTGAAT CTAAGTACAGAATTTCAAGTCCTTTCTGTCATCCTTTCAGATTGCTTGTC AATTTGACCTCACCTGCAGATATTTGCTTCAATAAGAATCAGAGTGAGCT AGCTGAAGAATCTGCCCCCACAAAAATGTCAAACACTTATTCTGCAAAGC AAATGGAAGTTGTTGGCCATCTTCAAGGATACAAAGAGGTAAATTTCTAT TCTGATCTTTCCGGTTGTACCAAAATAGAAATCCTAAAAGTTTAATCATT ATAACAAACTTTAACTTTTCATCTTTAATTTATAGGCTTTTGTAAATGAA AAGGCAATGAGTGCAATTGCTGCTCAAATAGGAAAAGTTTTACAGATggt atgttattattattatgtatTATTTATCATATTGATACTTTGACCTCTAA CTTAATATTCAGTTATTCAGGTCTCTGATCTATCTAAGTAGTTTGCTTTG AGAAAATATCCTTGAGTACACATAATTTGACTTTGTCTAGGAAATGGAAG ATCGAGGAGAAGACGAATATTTGTTATTTGAACGATTGCTTCTCCTGCTG AGAAACATTTTACACGTTCCTGCTTCACCAGAAGATGAAAAGGTgcattt taaaatcattttaccATACTACTTATGCTCAATTAATTTTATGTTTTAGA AAAACAGTAGCAGTTCTTTACCcacatattttcttaaaaactaAATCAAA ATGATTAAACCTAAGGATAGCCAAGGAACTAATTGTTTTAccctcttttt tttgttttagcgAACTGATGATGATGCCTCTCTGCATGATCAAATTTTAT GGTAGGACATTCTTGCATTCTCTTTTAAGTCCTACTACTCAGCTAgccta taaatatttttaaatatttctgtaacctgtattttgaaattttctacttt ttaggATTTTCTTGTAATCTCTTAAGTAGTTCTATTCATTCAGTCTATAA ATTTGCTAGATACTAAGATGTATTTCTATTCAAGTATTTCTGTAACCTGT TACTTGTAATTCTTTACTTCTTAACATTTAGGAGCATGCACTTGAATGGT ATTGATGATTTGTTAGTTTACATTTGTAGCTCGCCAGAAGAGGTAAATTT ATGTGAACATTTAGGTTTTATCATTCCCTCTTTCTGTCAGAAAAGGattc atttttttacaattttgttttAACCATTGAAAATTTTACCTTTCTTTCTG TCTATCTTTTCATATTAGAGTCGCTGGG

Coding sequence (CDS) from alignment at sc0000002:953745..962472+

>TCONS_00000449 ID=TCONS_00000449|Name=TCONS_00000449|organism=Clytia hemisphaerica|type=CDS|length=6129bp|location=Sequence derived from alignment at sc0000002:953745..962472+ (Clytia hemisphaerica)
ATGGAGAACACAACAATGGAGATGAACACAGAATTAGTCTGTGTGATGGC
CAGTCTTGGCTATCATGATGACACGGACTACTTTCTGGGTGAAGATTGTC
TTCCAAGTCTTAAAGATTTGATTCGTTTCTTGAAACATGAAGATGAATCT
TGTAACATCAGAAGACAAATGGGACATTCTCAACTGATTCAAAAGGACCT
TCTTCCAATGTTCATGTTTCATGCTGAAAATGCAGAACTCATTGATATTG
TTGTCAGATTGCTTGTCAATTTGACCTCACCTGCAGATATTTGCTTCAAT
AAGAATCAGAGTGAGCTAGCTGAAGAATCTGCCCCCACAAAAATGTCAAA
CACTTATTCTGCAAAGCAAATGGAAGTTGTTGGCCATCTTCAAGGATACA
AAGAGGCTTTTGTAAATGAAAAGGCAATGAGTGCAATTGCTGCTCAAATA
GGAAAAGTTTTACAGATgGAAATGGAAGATCGAGGAGAAGACGAATATTT
GTTATTTGAACGATTGCTTCTCCTGCTGAGAAACATTTTACACGTTCCTG
CTTCACCAGAAGATGAAAAGcgAACTGATGATGATGCCTCTCTGCATGAT
CAAATTTTATGGAGCATGCACTTGAATGGTATTGATGATTTGTTAGTTTA
CATTTGTAGCTCGCCAGAAGAGAGTCGCTGGATGGAGAACACAACAATGG
AGATGAACACAGAATTAGTCTGTGTGATGGCCAGTCTTGGCTATCATGAT
GACACGGACTACTTTCTGGGTGAAGATTGTCTTCCAAGTCTTAAAGATTT
GATTCGTTTCTTGAAACATGAAGATGAATCTTGTAACATCAGAAGACAAA
TGGGACATTCTCAACTGATTCAAAAGGACCTTCTTCCAATGTTCATGTTT
CATGCTGAAAATGCAGAACTCATTGATATTGTTGTCAGATTGCTTGTCAA
TTTGACCTCACCTGCAGATATTTGCTTCAATAAGAATCAGAGTGAGCTAG
CTGAAGAATCTGCCCCCACAAAAATGTCAAACACTTATTCTGCAAAGCAA
ATGGAAGTTGTTGGCCATCTTCAAGGATACAAAGAGGCTTTTGTAAATGA
AAAGGCAATGAGTGCAATTGCTGCTCAAATAGGAAAAGTTTTACAGATgG
AAATGGAAGATCGAGGAGAAGACGAATATTTGTTATTTGAACGATTGCTT
CTCCTGCTGAGAAACATTTTACACGTTCCTGCTTCACCAGAAGATGAAAA
GcgAACTGATGATGATGCCTCTCTGCATGATCAAATTTTATGGAGCATGC
ACTTGAATGGTATTGATGATTTGTTAGTTTACATTTGTAGCTCGCCAGAA
GAGAGTCGCTGGATGGAGAACACAACAATGGAGATGAACACAGAATTAGT
CTGTGTGATGGCCAGTCTTGGCTATCATGATGACACGGACTACTTTCTGG
GTGAAGATTGTCTTCCAAGTCTTAAAGATTTGATTCGTTTCTTGAAACAT
GAAGATGAATCTTGTAACATCAGAAGACAAATGGGACATTCTCAACTGAT
TCAAAAGGACCTTCTTCCAATGTTCATGTTTCATGCTGAAAATGCAGAAC
TCATTGATATTGTTGTCAGATTGCTTGTCAATTTGACCTCACCTGCAGAT
ATTTGCTTCAATAAGAATCAGAGTGAGCTAGCTGAAGAATCTGCCCCCAC
AAAAATGTCAAACACTTATTCTGCAAAGCAAATGGAAGTTGTTGGCCATC
TTCAAGGATACAAAGAGGCTTTTGTAAATGAAAAGGCAATGAGTGCAATT
GCTGCTCAAATAGGAAAAGTTTTACAGATgGAAATGGAAGATCGAGGAGA
AGACGAATATTTGTTATTTGAACGATTGCTTCTCCTGCTGAGAAACATTT
TACACGTTCCTGCTTCACCAGAAGATGAAAAGcgAACTGATGATGATGCC
TCTCTGCATGATCAAATTTTATGGAGCATGCACTTGAATGGTATTGATGA
TTTGTTAGTTTACATTTGTAGCTCGCCAGAAGAGAGTCGCTGGATGGAGA
ACACAACAATGGAGATGAACACAGAATTAGTCTGTGTGATGGCCAGTCTT
GGCTATCATGATGACACGGACTACTTTCTGGGTGAAGATTGTCTTCCAAG
TCTTAAAGATTTGATTCGTTTCTTGAAACATGAAGATGAATCTTGTAACA
TCAGAAGACAAATGGGACATTCTCAACTGATTCAAAAGGACCTTCTTCCA
ATGTTCATGTTTCATGCTGAAAATGCAGAACTCATTGATATTGTTGTCAG
ATTGCTTGTCAATTTGACCTCACCTGCAGATATTTGCTTCAATAAGAATC
AGAGTGAGCTAGCTGAAGAATCTGCCCCCACAAAAATGTCAAACACTTAT
TCTGCAAAGCAAATGGAAGTTGTTGGCCATCTTCAAGGATACAAAGAGGC
TTTTGTAAATGAAAAGGCAATGAGTGCAATTGCTGCTCAAATAGGAAAAG
TTTTACAGATgGAAATGGAAGATCGAGGAGAAGACGAATATTTGTTATTT
GAACGATTGCTTCTCCTGCTGAGAAACATTTTACACGTTCCTGCTTCACC
AGAAGATGAAAAGcgAACTGATGATGATGCCTCTCTGCATGATCAAATTT
TATGGAGCATGCACTTGAATGGTATTGATGATTTGTTAGTTTACATTTGT
AGCTCGCCAGAAGAGAGTCGCTGGATGGAGAACACAACAATGGAGATGAA
CACAGAATTAGTCTGTGTGATGGCCAGTCTTGGCTATCATGATGACACGG
ACTACTTTCTGGGTGAAGATTGTCTTCCAAGTCTTAAAGATTTGATTCGT
TTCTTGAAACATGAAGATGAATCTTGTAACATCAGAAGACAAATGGGACA
TTCTCAACTGATTCAAAAGGACCTTCTTCCAATGTTCATGTTTCATGCTG
AAAATGCAGAACTCATTGATATTGTTGTCAGATTGCTTGTCAATTTGACC
TCACCTGCAGATATTTGCTTCAATAAGAATCAGAGTGAGCTAGCTGAAGA
ATCTGCCCCCACAAAAATGTCAAACACTTATTCTGCAAAGCAAATGGAAG
TTGTTGGCCATCTTCAAGGATACAAAGAGGCTTTTGTAAATGAAAAGGCA
ATGAGTGCAATTGCTGCTCAAATAGGAAAAGTTTTACAGATgGAAATGGA
AGATCGAGGAGAAGACGAATATTTGTTATTTGAACGATTGCTTCTCCTGC
TGAGAAACATTTTACACGTTCCTGCTTCACCAGAAGATGAAAAGcgAACT
GATGATGATGCCTCTCTGCATGATCAAATTTTATGGAGCATGCACTTGAA
TGGTATTGATGATTTGTTAGTTTACATTTGTAGCTCGCCAGAAGAGAGTC
GCTGGATGGAGAACACAACAATGGAGATGAACACAGAATTAGTCTGTGTG
ATGGCCAGTCTTGGCTATCATGATGACACGGACTACTTTCTGGGTGAAGA
TTGTCTTCCAAGTCTTAAAGATTTGATTCGTTTCTTGAAACATGAAGATG
AATCTTGTAACATCAGAAGACAAATGGGACATTCTCAACTGATTCAAAAG
GACCTTCTTCCAATGTTCATGTTTCATGCTGAAAATGCAGAACTCATTGA
TATTGTTGTCAGATTGCTTGTCAATTTGACCTCACCTGCAGATATTTGCT
TCAATAAGAATCAGAGTGAGCTAGCTGAAGAATCTGCCCCCACAAAAATG
TCAAACACTTATTCTGCAAAGCAAATGGAAGTTGTTGGCCATCTTCAAGG
ATACAAAGAGGCTTTTGTAAATGAAAAGGCAATGAGTGCAATTGCTGCTC
AAATAGGAAAAGTTTTACAGATgGAAATGGAAGATCGAGGAGAAGACGAA
TATTTGTTATTTGAACGATTGCTTCTCCTGCTGAGAAACATTTTACACGT
TCCTGCTTCACCAGAAGATGAAAAGcgAACTGATGATGATGCCTCTCTGC
ATGATCAAATTTTATGGAGCATGCACTTGAATGGTATTGATGATTTGTTA
GTTTACATTTGTAGCTCGCCAGAAGAGAGTCGCTGGATGGAGAACACAAC
AATGGAGATGAACACAGAATTAGTCTGTGTGATGGCCAGTCTTGGCTATC
ATGATGACACGGACTACTTTCTGGGTGAAGATTGTCTTCCAAGTCTTAAA
GATTTGATTCGTTTCTTGAAACATGAAGATGAATCTTGTAACATCAGAAG
ACAAATGGGACATTCTCAACTGATTCAAAAGGACCTTCTTCCAATGTTCA
TGTTTCATGCTGAAAATGCAGAACTCATTGATATTGTTGTCAGATTGCTT
GTCAATTTGACCTCACCTGCAGATATTTGCTTCAATAAGAATCAGAGTGA
GCTAGCTGAAGAATCTGCCCCCACAAAAATGTCAAACACTTATTCTGCAA
AGCAAATGGAAGTTGTTGGCCATCTTCAAGGATACAAAGAGGCTTTTGTA
AATGAAAAGGCAATGAGTGCAATTGCTGCTCAAATAGGAAAAGTTTTACA
GATgGAAATGGAAGATCGAGGAGAAGACGAATATTTGTTATTTGAACGAT
TGCTTCTCCTGCTGAGAAACATTTTACACGTTCCTGCTTCACCAGAAGAT
GAAAAGcgAACTGATGATGATGCCTCTCTGCATGATCAAATTTTATGGAG
CATGCACTTGAATGGTATTGATGATTTGTTAGTTTACATTTGTAGCTCGC
CAGAAGAGAGTCGCTGGATGGAGAACACAACAATGGAGATGAACACAGAA
TTAGTCTGTGTGATGGCCAGTCTTGGCTATCATGATGACACGGACTACTT
TCTGGGTGAAGATTGTCTTCCAAGTCTTAAAGATTTGATTCGTTTCTTGA
AACATGAAGATGAATCTTGTAACATCAGAAGACAAATGGGACATTCTCAA
CTGATTCAAAAGGACCTTCTTCCAATGTTCATGTTTCATGCTGAAAATGC
AGAACTCATTGATATTGTTGTCAGATTGCTTGTCAATTTGACCTCACCTG
CAGATATTTGCTTCAATAAGAATCAGAGTGAGCTAGCTGAAGAATCTGCC
CCCACAAAAATGTCAAACACTTATTCTGCAAAGCAAATGGAAGTTGTTGG
CCATCTTCAAGGATACAAAGAGGCTTTTGTAAATGAAAAGGCAATGAGTG
CAATTGCTGCTCAAATAGGAAAAGTTTTACAGATgGAAATGGAAGATCGA
GGAGAAGACGAATATTTGTTATTTGAACGATTGCTTCTCCTGCTGAGAAA
CATTTTACACGTTCCTGCTTCACCAGAAGATGAAAAGcgAACTGATGATG
ATGCCTCTCTGCATGATCAAATTTTATGGAGCATGCACTTGAATGGTATT
GATGATTTGTTAGTTTACATTTGTAGCTCGCCAGAAGAGAGTCGCTGGAT
GGAGAACACAACAATGGAGATGAACACAGAATTAGTCTGTGTGATGGCCA
GTCTTGGCTATCATGATGACACGGACTACTTTCTGGGTGAAGATTGTCTT
CCAAGTCTTAAAGATTTGATTCGTTTCTTGAAACATGAAGATGAATCTTG
TAACATCAGAAGACAAATGGGACATTCTCAACTGATTCAAAAGGACCTTC
TTCCAATGTTCATGTTTCATGCTGAAAATGCAGAACTCATTGATATTGTT
GTCAGATTGCTTGTCAATTTGACCTCACCTGCAGATATTTGCTTCAATAA
GAATCAGAGTGAGCTAGCTGAAGAATCTGCCCCCACAAAAATGTCAAACA
CTTATTCTGCAAAGCAAATGGAAGTTGTTGGCCATCTTCAAGGATACAAA
GAGGCTTTTGTAAATGAAAAGGCAATGAGTGCAATTGCTGCTCAAATAGG
AAAAGTTTTACAGATgGAAATGGAAGATCGAGGAGAAGACGAATATTTGT
TATTTGAACGATTGCTTCTCCTGCTGAGAAACATTTTACACGTTCCTGCT
TCACCAGAAGATGAAAAGcgAACTGATGATGATGCCTCTCTGCATGATCA
AATTTTATGGAGCATGCACTTGAATGGTATTGATGATTTGTTAGTTTACA
TTTGTAGCTCGCCAGAAGAGAGTCGCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000286XLOC_000286Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000449-exon-sc0000002-1491911889:953745..953871TCONS_00000449-exon-sc0000002-1491911889:953745..953871Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1510915933:953745..953871TCONS_00000449-exon-sc0000002-1510915933:953745..953871Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1575043694:953745..953871TCONS_00000449-exon-sc0000002-1575043694:953745..953871Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1491911889:960669..960857TCONS_00000449-exon-sc0000002-1491911889:960669..960857Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1510915933:960669..960857TCONS_00000449-exon-sc0000002-1510915933:960669..960857Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1575043694:960669..960857TCONS_00000449-exon-sc0000002-1575043694:960669..960857Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1491911889:960969..961030TCONS_00000449-exon-sc0000002-1491911889:960969..961030Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1510915933:960969..961030TCONS_00000449-exon-sc0000002-1510915933:960969..961030Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1575043694:960969..961030TCONS_00000449-exon-sc0000002-1575043694:960969..961030Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1491911889:961285..961432TCONS_00000449-exon-sc0000002-1491911889:961285..961432Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1510915933:961285..961432TCONS_00000449-exon-sc0000002-1510915933:961285..961432Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1575043694:961285..961432TCONS_00000449-exon-sc0000002-1575043694:961285..961432Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1491911889:961530..961592TCONS_00000449-exon-sc0000002-1491911889:961530..961592Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1510915933:961530..961592TCONS_00000449-exon-sc0000002-1510915933:961530..961592Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1575043694:961530..961592TCONS_00000449-exon-sc0000002-1575043694:961530..961592Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1491911889:961735..961836TCONS_00000449-exon-sc0000002-1491911889:961735..961836Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1510915933:961735..961836TCONS_00000449-exon-sc0000002-1510915933:961735..961836Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1575043694:961735..961836TCONS_00000449-exon-sc0000002-1575043694:961735..961836Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1491911889:962005..962045TCONS_00000449-exon-sc0000002-1491911889:962005..962045Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1510915933:962005..962045TCONS_00000449-exon-sc0000002-1510915933:962005..962045Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1575043694:962005..962045TCONS_00000449-exon-sc0000002-1575043694:962005..962045Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1491911889:962276..962336TCONS_00000449-exon-sc0000002-1491911889:962276..962336Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1510915933:962276..962336TCONS_00000449-exon-sc0000002-1510915933:962276..962336Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1575043694:962276..962336TCONS_00000449-exon-sc0000002-1575043694:962276..962336Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1491911889:962463..962472TCONS_00000449-exon-sc0000002-1491911889:962463..962472Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1510915933:962463..962472TCONS_00000449-exon-sc0000002-1510915933:962463..962472Clytia hemisphaericaexon
TCONS_00000449-exon-sc0000002-1575043694:962463..962472TCONS_00000449-exon-sc0000002-1575043694:962463..962472Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000449-proteinTCONS_00000449-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:953745..962472 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.14375 9.62953 20.2919 14.9906 1.97294 1.9488 4.23206 3.52178 5.54779 9.41374 9.13721 5.48933 3.89198 5.23902 5.81518 7.35496 5.69426 7.35299 1.5552 2.03426 3.53628 3.62223 2.46515 3.79784 7.06841 7.00932 2.50654 1.48585 1.32584 1.1482
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006906Timeless
Blast
BLAST of TCONS_00000449 vs. Swiss-Prot (Human)
Match: TIM (Protein timeless homolog OS=Homo sapiens GN=TIMELESS PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 2.254e-48
Identity = 97/216 (44.91%), Postives = 147/216 (68.06%), Query Frame = 2
Query:  155 LVCVMASLGYHDDTDYFLGEDCLPSLKDLIRFLKHEDESCNIRRQMGHSQLIQKDLLPMFMFHAENAELIDIVVRLLVNLTSPADICFNKNQSELAEESAPTKMSNTYSAKQMEVVGHLQGYKEAFVNEKAMSAIAAQIGKVLQMEMEDRGEDEYXXXXXXXXXXXXXXHVPASPEDEKRTDDDASLHDQILWSMHLNGIDDLLVYICSSPEESRW 802
            L+   ++LGY +   Y    DCL S+KDLIR+L+HEDE+ ++R+Q+G +Q++Q DLLP+   H ++  L D V+RL+VNLT PA +CF     E            ++    ++V+ +LQ YKEAF +EKA   ++  + ++LQ+  E+R E++ LL ER+LLL+RNILHVPA  + EK+ DDDAS HDQ+LW++HL+G+DDLL+++ SS  E +W
Sbjct:   10 LLATCSALGYLEGDTYHKEPDCLESVKDLIRYLRHEDETRDVRQQLGAAQILQSDLLPILTQHHQDKPLFDAVIRLMVNLTQPALLCFGNLPKE-----------PSFRHHFLQVLTYLQAYKEAFASEKAFGVLSETLYELLQLGWEERQEEDNLLIERILLLVRNILHVPADLDQEKKIDDDASAHDQLLWAIHLSGLDDLLLFLASSSAEEQW 214          
The following BLAST results are available for this feature:
BLAST of TCONS_00000449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TIM2.254e-4844.91Protein timeless homolog OS=Homo sapiens GN=TIMELE... [more]
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