|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000447 ID=TCONS_00000447|Name=TCONS_00000447|organism=Clytia hemisphaerica|type=transcript|length=2822bpRun BLAST on NCBI protein sequence of TCONS_00000447-protein >TCONS_00000447-protein ID=TCONS_00000447-protein|Name=TCONS_00000447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=808bp MGPAVPIEQVQTETSEDGKIYERSQQDGEMYSKPTVGIIYPPPEVRNIVDRun BLAST on NCBI transcript from alignment at sc0000002:878549..893424+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000447 ID=TCONS_00000447|Name=TCONS_00000447|organism=Clytia hemisphaerica|type=transcript|length=14876bp|location=Sequence derived from alignment at sc0000002:878549..893424+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:878549..893424+ >TCONS_00000447 ID=TCONS_00000447|Name=TCONS_00000447|organism=Clytia hemisphaerica|type=CDS|length=43686bp|location=Sequence derived from alignment at sc0000002:878549..893424+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000447 vs. Swiss-Prot (Human)
Match: SF3A1 (Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1) HSP 1 Score: 327.405 bits (838), Expect = 1.752e-97 Identity = 183/292 (62.67%), Postives = 227/292 (77.74%), Query Frame = 1
Query: 283 ERSQQDGEMYSKPTVGIIYPPPEVRNIVDRTANFVARNGPEFEERIRGNEADNPKFNFLNPNDPYHAYYAHKLKEYRETDI----ADLPSLNEKEXXXXXXXXXXXXXXXVI-ETIIPKDPPPAYEFTADPPTISALDLDIVKLTAQFVAKNGKGFLTNLMTREQRNYQFDFLRPQHSLFQYFTRLVEQYTKVLLPPGDITQKLQKDLSDQWKVLDTVKYRVEWQQYQXXXXXXXXXXXXXXXIAFASIDWHDXXXXXXXXXXXXXXANLPPPVKKDQLGARMLQEERIEKL 1143
E S ++ SKP VGIIYPPPEVRNIVD+TA+FVARNGPEFE RIR NE +NPKFNFLNPNDPYHAYY HK+ E++E A +P + +++ Q Q +K QVI ETI+PK+PPP +EF ADPP+ISA DLD+VKLTAQFVA+NG+ FLT LM +EQRNYQFDFLRPQHSLF YFT+LVEQYTK+L+PP + KL+K+ + +VLD V YRVEW ++Q+RE++K E+EKE+ER+A+A IDWHDFVVVETV+F E N PPP ++LGAR+L +ER EK
Sbjct: 26 EASSKEDSAPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKF 317 HSP 2 Score: 182.185 bits (461), Expect = 1.943e-47 Identity = 96/168 (57.14%), Postives = 126/168 (75.00%), Query Frame = 1
Query: 1336 VHIRK-YDPKASKQPQPTPGGVPEKYLISPLTGEKIPVGSMESHMKIALLDPRWKEQKEKAIEEKRQQEQVFAEGVHIGDTLKQLAERRSDIFGVAAEETLIGRKLGEEEEQALKKTPKEVWDGHTASIERTTKMAHSNITYEDQIKAIHKAKGLLPSEDA-ERIGPS 1833
V +RK YDPKASK P P P++YL+SP+TGEKIP M+ HM+I LLDPRW EQ++++I EK+ ++V+A G+ I +LKQLAERR+DIFGV EET IG+K+GEEE Q K K WDGH+ S+ RT + A +NIT ++QI+AIHKAKGL+P +D E+IGPS
Sbjct: 387 VIVRKDYDPKASKPLPPAPA--PDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQ--KPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPS 548 HSP 3 Score: 124.405 bits (311), Expect = 5.965e-29 Identity = 56/118 (47.46%), Postives = 86/118 (72.88%), Query Frame = 1
Query: 2290 DDEPASKRAKFDESDLIPEDAFMRQNAPNVTFRVQVPDLPDKSDWQCQGQTLSISAMLSESCASIKAKVNAMIGMPAGKQKLQLGSLFVKDSNTLAFYNFTSSSLVQLQVKERGGRKK 2643
+DEP SK+ K ++S L+PE+ F+R+N V+ +VQVP++ DK++W+ GQ L + L++ + IK K++ GMPAGKQKLQ +F+KDSN+LA+YN + +++ L +KERGGRKK
Sbjct: 677 EDEPTSKKLKTEDS-LMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793 The following BLAST results are available for this feature:
BLAST of TCONS_00000447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.