TCONS_00000447-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000447-protein
Unique NameTCONS_00000447-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length808

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000447-protein ID=TCONS_00000447-protein|Name=TCONS_00000447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=808bp
MGPAVPIEQVQTETSEDGKIYERSQQDGEMYSKPTVGIIYPPPEVRNIVD
RTANFVARNGPEFEERIRGNEADNPKFNFLNPNDPYHAYYAHKLKEYRET
DIADLPSLNEKEPQKAPQTQTKKQAPQVIETIIPKDPPPAYEFTADPPTI
SALDLDIVKLTAQFVAKNGKGFLTNLMTREQRNYQFDFLRPQHSLFQYFT
RLVEQYTKVLLPPGDITQKLQKDLSDQWKVLDTVKYRVEWQQYQDREKRK
VEDEKERERIAFASIDWHDFVVVETVNFNEEETANLPPPVKKDQLGARML
QEERIEKLKATGEDAEQVEMDVEEEEEELYQPYQQEQEKEKADSDMDEES
DEEEAQPPAFKPPMMPPPPSGPVHIRKYDPKASKQPQPTPGGVPEKYLIS
PLTGEKIPVGSMESHMKIALLDPRWKEQKEKAIEEKRQQEQVFAEGVHIG
DTLKQLAERRSDIFGVAAEETLIGRKLGEEEEQALKKTPKEVWDGHTASI
ERTTKMAHSNITYEDQIKAIHKAKGLLPSEDAERIGPSMKQPPPRPGPPP
PRPMPPRPTPPSRPMDDTPAPIVTIRSGDGPGPSKNNPQAPKPLMGAPPM
EPPRNMPPPVNMPPRPPQNPMMRPPPMMRPPGPGDMGMMQPPPLMPPPPG
MMMPPPPGGMMPPPPGGMMPPRPPQMDDPGMRGPPPQNMDDDEPASKRAK
FDESDLIPEDAFMRQNAPNVTFRVQVPDLPDKSDWQCQGQTLSISAMLSE
SCASIKAKVNAMIGMPAGKQKLQLGSLFVKDSNTLAFYNFTSSSLVQLQV
KERGGRKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000284XLOC_000284Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000447TCONS_00000447Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000061Surp
IPR000626Ubiquitin_dom
IPR022030SF3A1
IPR029071Ubiquitin-rel_dom
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 305..328
NoneNo IPR availableGENE3D3.10.20.90coord: 693..808
e-value: 2.9E-13
score: 49.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 522..648
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..398
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 665..695
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
IPR000061SWAP/SurpSMARTSM00648surpneu2coord: 46..99
e-value: 1.1E-27
score: 107.9
coord: 155..208
e-value: 2.3E-22
score: 90.3
IPR000061SWAP/SurpPFAMPF01805Surpcoord: 46..97
e-value: 2.6E-21
score: 75.3
coord: 155..206
e-value: 4.5E-21
score: 74.5
IPR000061SWAP/SurpPROSITEPS50128SURPcoord: 48..90
score: 19.673
IPR000061SWAP/SurpPROSITEPS50128SURPcoord: 157..199
score: 16.774
IPR000061SWAP/SurpSUPERFAMILY109905Surp module (SWAP domain)coord: 32..98
IPR000061SWAP/SurpSUPERFAMILY109905Surp module (SWAP domain)coord: 132..207
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 727..801
e-value: 5.2E-5
score: 32.7
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 738..802
e-value: 1.7E-5
score: 24.3
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 722..805
score: 14.469
IPR022030Splicing factor 3A subunit 1PFAMPF12230PRP21_like_Pcoord: 224..459
e-value: 7.5E-51
score: 173.0
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 699..806

Blast
[Close]
BLAST of TCONS_00000447-protein vs. Swiss-Prot (Human)
Match: SF3A1 (Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1)

HSP 1 Score: 516.538 bits (1329), Expect = 2.917e-172
Identity = 298/529 (56.33%), Postives = 384/529 (72.59%), Query Frame = 0 
Query:   22 ERSQQDGEMYSKPTVGIIYPPPEVRNIVDRTANFVARNGPEFEERIRGNEADNPKFNFLNPNDPYHAYYAHKLKEYRETDI----ADLPSLNEKEPQKAPQTQTKKQAPQVI-ETIIPKDPPPAYEFTADPPTISALDLDIVKLTAQFVAKNGKGFLTNLMTREQRNYQFDFLRPQHSLFQYFTRLVEQYTKVLLPPGDITQKLQKDLSDQWKVLDTVKYRVEWQQYQDREKRKVEDEKERERIAFASIDWHDFVVVETVNFNEEETANLPPPVKKDQLGARMLQEERIEKLKATGEDAEQVEMDVEEEEEELYQPYQQEQEKEKADSDMDEESDEEE-----AQPPAFKPPMMPPPPSGPVHIRK-YDPKASKQPQPTPGGVPEKYLISPLTGEKIPVGSMESHMKIALLDPRWKEQKEKAIEEKRQQEQVFAEGVHIGDTLKQLAERRSDIFGVAAEETLIGRKLGEEEEQALKKTPKEVWDGHTASIERTTKMAHSNITYEDQIKAIHKAKGLLPSEDA-ERIGPS 538
            E S ++    SKP VGIIYPPPEVRNIVD+TA+FVARNGPEFE RIR NE +NPKFNFLNPNDPYHAYY HK+ E++E       A +P + +++ Q   Q   +K   QVI ETI+PK+PPP +EF ADPP+ISA DLD+VKLTAQFVA+NG+ FLT LM +EQRNYQFDFLRPQHSLF YFT+LVEQYTK+L+PP  +  KL+K+  +  +VLD V YRVEW ++Q+RE++K E+EKE+ER+A+A IDWHDFVVVETV+F   E  N PPP   ++LGAR+L +ER EK   + E   +VE D E++++E  +    + +++    DMDE SD+EE       PP    P   PP    V +RK YDPKASK   P P   P++YL+SP+TGEKIP   M+ HM+I LLDPRW EQ++++I EK+  ++V+A G+ I  +LKQLAERR+DIFGV  EET IG+K+GEEE Q  K   K  WDGH+ S+ RT + A +NIT ++QI+AIHKAKGL+P +D  E+IGPS
Sbjct:   26 EASSKEDSAPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQLDQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPA--PDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQ--KPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPS 548
The following BLAST results are available for this feature:
BLAST of TCONS_00000447-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SF3A12.917e-17256.33Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF... [more]
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