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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000441 ID=TCONS_00000441|Name=TCONS_00000441|organism=Clytia hemisphaerica|type=transcript|length=1526bp AGATAGTGGGTGAGCTATAAttctgatttttgaattttcattttagtaTT TCTgtcaaaaaattatcatttaaaaagtaaaagaaaaaacattatcaaaa gaTGAGAGGAGTGATGAGAATCTTGCTCAATTTTTTGAGCTGTCGTTGGA AGTTGTCTTCAAAATCAATTATCATTGGTATGATTATTTTCTTTGGTGGA AATTATATTATTCTACGTTCGATGTTTGCCCGGAATTATACTGATGAAAC AAAGGTTGGTCACAGAACTGAAGATGATGGTGTTATTGTTAAGCAGAATG TCTATCATAATAATAGaaaagacaataaaaatgaatttattgaATCTTTA GTTGATAAAAGTCAAAATGTTGGGAATGGGAAAAGTCCACATAAATTTAA CCATGAAACTGAGGCACCTgttggaaatcaaaatcatattgATGTTAAGA ATGTTgatcatgaaaataaaaaagatggtAAATTTAAAATTGCTTTATTA ATTATTTCTTGTAATCGAGTTGAAGTACGGCGTTGTTTGGATAAGATTTT TGAACACAAACCTAAAGATTATCCCATTGAAATAATTGTCAGTCAAGATT GTGGTCACAAGGCAACAGCCGATGTTATCCGATCGTATGGTAATCGAATC AAGTTTATTCAACAGCCTGATTTAGGCCCAGTTCATGGAGTACCTAACAA CATGCATCGTTTTATGGGTTATTATAAGATTTCTCGACATTTTCAGTTTG CACTTGGTAAAGTTTTTGAAATGACGGATAGTGATAGTGTAATTATTGTG GAAGATGATATAGAAATAgCTCCTGatttctttgattattttttggcAAC TCGGAAACTTTTAGAAGTTGACAACACTTTGTTTTGTGTATCTGCTTGGA ATGATAATGGGAAAGAAGACTCCGTTGATCCATCTGCTATTGATGTTTTG TACAGGTCTGACTTCTTTCCTGGACTTGGCTGGATGATGACTCGTAAACT TTGGAATGAGATTGGGCCTAACTGGCCTAAAGGTTTTTGGGATGATTGGA TGAGAGATCCTAAACAACGTAAAGATAGATCATGTATAAGACCAGAGATA TCACGTACAAAAACCTTTGGACGTATTGGAGTCAGTCAAGGGCAGTTTTA TGATCAATATTTAAAGTTTATCAGACTGAATAATCAAGCTTTTCCATTTC GTGATTACGATTTGAGTTATTTGACGAAATCAAAATATGATGAAGAATTT TTAGAGAAGGTTTATACAACACCTGAAGTGGATTCACAACAAGCTACATC AAAAGGAGCATCAGATGTCCGTATTACTTACAACAATCACTATGAATTCG AAAACTTTGCAAGGCGTTTTGGATTAATGTCAGATTTCAAAGCTGGAGTA CCTAGAACAGCATATCATGGTGTAGTCACTTTCTTTCGTGGCGGACATCG CATCTATATAGCTCCGCCCAAAAATTGGAAAGGCTACAGAGAGCATTAAT ATTACTTCTATTTTAATCTAGAATTT Run BLAST on NCBI protein sequence of TCONS_00000441-protein >TCONS_00000441-protein ID=TCONS_00000441-protein|Name=TCONS_00000441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MRGVMRILLNFLSCRWKLSSKSIIIGMIIFFGGNYIILRSMFARNYTDET KVGHRTEDDGVIVKQNVYHNNRKDNKNEFIESLVDKSQNVGNGKSPHKFN HETEAPVGNQNHIDVKNVDHENKKDGKFKIALLIISCNRVEVRRCLDKIF EHKPKDYPIEIIVSQDCGHKATADVIRSYGNRIKFIQQPDLGPVHGVPNN MHRFMGYYKISRHFQFALGKVFEMTDSDSVIIVEDDIEIAPDFFDYFLAT RKLLEVDNTLFCVSAWNDNGKEDSVDPSAIDVLYRSDFFPGLGWMMTRKL WNEIGPNWPKGFWDDWMRDPKQRKDRSCIRPEISRTKTFGRIGVSQGQFY DQYLKFIRLNNQAFPFRDYDLSYLTKSKYDEEFLEKVYTTPEVDSQQATS KGASDVRITYNNHYEFENFARRFGLMSDFKAGVPRTAYHGVVTFFRGGHR IYIAPPKNWKGYREH Run BLAST on NCBI transcript from alignment at sc0000002:725982..732637+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000441 ID=TCONS_00000441|Name=TCONS_00000441|organism=Clytia hemisphaerica|type=transcript|length=6656bp|location=Sequence derived from alignment at sc0000002:725982..732637+ (Clytia hemisphaerica) AGATAGTGGGTGAGCTATAAttctgatttttgaattttcattttagtaTT
TCTgtcaaaaaattatcatttaaaaagtaaaagaaaaaacattatcaaaa
gaTGAGAGGAGTGATGAGAATCTTGCTCAATTTTTTGAGCTGTCGTTGGA
AGTTGTCTTCAAAATCAATTATCATTGGTATGATTATTTTCTTTGGTGGA
AATTATATTATTCTACGTTCGATGTTTGCCCGGAATTATACTGATGAAAC
AAAGGTTGGTCACAGAACTGAAGATGATGGTGTTATTGTTAAGCAGAATG
TCTATCATAATAATAGaaaagacaataaaaatgaatttattgaATCTTTA
GTTGATAAAAGTCAAAATGTTGGGAATGGGAAAAGTCCACATAAATTTAA
CCATGAAACTGAGGCACCTgttggaaatcaaaatcatattgATGTTAAGA
ATGTTgatcatgaaaataaaaaagatggtAAATTTAAAATTGCTTTATTA
ATTATTTCTTGTAATCGAGTTGAAGTACGGCGTTGTTTGGATAAGATTTT
TGAACACAAACCTAAAGATTATCCCATTGAAATAATTGTCAGTCAAGATT
GTGGTCACAAGGCAACAGCCGATGTTATCCGATCGTATGGTAATCGAATC
AAGTTTATTCAACAGCCTGATTTAGGCCCAGTTCATGGAGTACCTAACAA
CATGCATCGTTTTATGGGTTATTATAAGATTTCTCGACATTTTCAGTTTG
CACTTGGTAAAGTTTTTGAAATGACGGATAGTGATAGTGTAATTATTGTG
GAAGATGATATAGAAATAggtatattttttttactttttacatatCTTTT
CGAAATCTTTCTAGTTGAGAATTATTAATGCTACATAAAGAgactagttt
gagtaaagaaaacgatttaatACAATTCACTGAAGATTTCCATCCtggat
ggcatgaaactttgagtatgaaattaacttaaatagttttctttactcaa
actagtatAAAGCTCTGTTATCATTAACATTGAGCACTGCTATTGGTTTT
GGCTTACACAAAGTAGTGCTTCACAAGAGATGTATTTTCATGGGTTTTTG
TTACAATTTGAGAGAATTTACTCTTTCCTGTTGGGTtgggtggaggatat
ataatttttgaagtGATCTACCagtaaatattttgatttttcatcgCCTG
GACACGTGCCTTACCTTTGGACAAGCATCGACCTCTGAGACACTAAAATG
AAATCCATGGAGCATTAATTCATCTAATCGATAAGGCAATTTGATAAATT
TGTNCCCTAGTCTTCATAGATATACCATAAGAGGTATAAGGAGGGTCAGA
ATCCACTTATTGATCTGCTGAGCATAgtgaggaaaatttttttcaatctg
tgattccgacttcctattattcctatctttaaagaagggtgttggaatta
gatgAGCGATGTCACCATGACACCAAGTTATGATACTACATTTCAAGCTA
GCTGGTATGGTAGGACATAAACGgtggttttgaaaaataatcttCAAATT
TACATCCAGGAAGGGAACGTTTTTTAgcagaaatatttttccaaattcaa
gagaatttattcagcttttttttgtaaaagaaattcgaaaatgagttttt
gaaacTTCTTGTACGACACAGCAAAGTACCAGGGGTACTAATATCCATAG
CGCTAGGCACCACAGATATCTAtatacttgaaattttttgcattttctta
gTTTAGCCTCTATTAATTAGAACAACCTATACTAGTAGGTATATAGTATA
TAGTTTTACAATCTACACTTGCACAACTATAACAGCTACAGAAAACACTC
TGACTCCAAATTTCTTGTTTGGCCCAAAGACGTTGAAAACGGTCCAGTGT
TTTTTGTGGATCGCCTCGTACATCAAATAAAGGGAGACAAgaaagtaaag
ttttttttaaaggatAGAATCATTAATCTTTTATGTGCGGCTCCACCATG
TGGAAGGACACGCTTTTGAGTACTAATGCATTATGTATCTGACATGAGAA
AAGTGTCTAGTGGGAGTGTGTATGACGTATCCATTCCAAATGAAATTgtc
taataaaatattttttttcagtcttGATTACTCTCAGGTATCTAATAGCC
CGGGGGAGGGTTGGAATAAgtgataatattttcaaaaattaattagcggg
ggggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GTGATCGAATCAAGTTTATTCAACAGCCTGATTTAGGCCCAGTTCATGGA
GTACCTAACAACATGCATCGTTTTATGGGTTATTATAAGATTTCTCGACA
TTTTCAGTTTGCACTTGGTAAAGTTTTTGAAATGACGGATAGTGATAGTG
TAATTATTGTGGAAGATGATATAGAAATAggtatattttttttacttttt
acatatCTTTTCGAAATCTTTCTAGTTGAGAATTATTAATGCTACATAAA
GAgactagtttgagtaaagaaaacgatttaatACAATTCACTGAAGATTT
CCATCCtggatggcatgaaactttgagtatgaaattaacttaaatagttt
tctttactcaaactagtatAAAGCTCTGTTATCATTAACATTGAGCACTG
CTATTGGTTTTGGCTTACACAAAGTAGTGCTTCACAAGAGATGTATTTTC
ATGGGTTTTTGTTACAATTTCAGAGAATTTACTCTTTCCTGTTGGGTtgg
gtggaggatatataatttttgaagtGATCTACCagtaaatattttaattt
ttcatcgcCTGGACACGTGCCTTACCTTTGGACAAGCATCGACCTCTGAG
ACACTAAAATGAAATCCATGGAGCATTAATTCATCTAATCGATAAGGcaa
tttgataaatttgttcTATGCTATATCTTCCATCACCTAATGACGATcca
ttttggtttttaaaatgTGGATTTTGAAGATGTGTAACTGTTTGTCCAAA
ATAAATTGTTCATATTTATATAAAAtccatcatttttttcttcttatagC
TCCTGatttctttgattattttttggcAACTCGGAAACTTTTAGAAGTTG
ACAACACTTTGTTTTGTGTATCTGCTTGGAATGATAATGGGAAAGAAGAC
TCCGTTGATCCATCTGCTATTGATGTTTTGTACAGGTCTGACTTCTTTCC
TGGACTTGGCTGGATGATGACTCGTAAACTTTGGAATGAGATTGGGCCTA
ACTGGCCTAAAGGTTTTTGGGATGATTGGATGAGAGATCCTAAACAACGT
AAAGATAGATCATGTATAAGACCAGAGATATCACGTACAAAAACCTTTGG
ACGTATTGGAGTCAGTCAAGGGCAGTTTTATGATCAATATTTAAAGTTTA
TCAGACTGAATAATCAAGCTTTTCCATTTCGTGATTACGATTTGAGTTAT
TTGACGAAATCAAAATATGATGAAGAATTTTTAGAGAAGGTTTATACAAC
ACCTGAAGTGGATTCACAACAAGCTACATCAAAAGGAGCATCAGATGTCC
GTATTACTTACAACAATCACTATGAATTCGAAAACTTTGCAAGGCGTTTT
GGATTAATGTCAGATTTCAAAGCTGGAGTACCTAGAACAGCATATCATGG
TGTAGTCACTTTCTTTCGTGGCGGACATCGCATCTATATAGCTCCGCCCA
AAAATTGGAAAGGCTACAGAGAGCATTAATATTACTTCTATTTTAATCTA
GAATTT Coding sequence (CDS) from alignment at sc0000002:725982..732637+ >TCONS_00000441 ID=TCONS_00000441|Name=TCONS_00000441|organism=Clytia hemisphaerica|type=CDS|length=2796bp|location=Sequence derived from alignment at sc0000002:725982..732637+ (Clytia hemisphaerica) aTGAGAGGAGTGATGAGAATCTTGCTCAATTTTTTGAGCTGTCGTTGGAA GTTGTCTTCAAAATCAATTATCATTGGTATGATTATTTTCTTTGGTGGAA ATTATATTATTCTACGTTCGATGTTTGCCCGGAATTATACTGATGAAACA AAGGTTGGTCACAGAACTGAAGATGATGGTGTTATTGTTAAGCAGAATGT CTATCATAATAATAGaaaagacaataaaaatgaatttattgaATCTTTAG TTGATAAAAGTCAAAATGTTGGGAATGGGAAAAGTCCACATAAATTTAAC CATGAAACTGAGGCACCTgttggaaatcaaaatcatattgATGTTAAGAA TGTTgatcatgaaaataaaaaagatggtAAATTTAAAATTGCTTTATTAA TTATTTCTTGTAATCGAGTTGAAGTACGGCGTTGTTTGGATAAGATTTTT GAACACAAACCTAAAGATTATCCCATTGAAATAATTGTCAGTCAAGATTG TGGTCACAAGGCAACAGCCGATGTTATCCGATCGTATGGTAATCGAATCA AGTTTATTCAACAGCCTGATTTAGGCCCAGTTCATGGAGTACCTAACAAC ATGCATCGTTTTATGGGTTATTATAAGATTTCTCGACATTTTCAGTTTGC ACTTGGTAAAGTTTTTGAAATGACGGATAGTGATAGTGTAATTATTGTGG AAGATGATATAGAAATAgCTCCTGatttctttgattattttttggcAACT CGGAAACTTTTAGAAGTTGACAACACTTTGTTTTGTGTATCTGCTTGGAA TGATAATGGGAAAGAAGACTCCGTTGATCCATCTGCTATTGATGTTTTGT ACAGGTCTGACTTCTTTCCTGGACTTGGCTGGATGATGACTCGTAAACTT TGGAATGAGATTGGGCCTAACTGGCCTAAAGGTTTTTGGGATGATTGGAT GAGAGATCCTAAACAACGTAAAGATAGATCATGTATAAGACCAGAGATAT CACGTACAAAAACCTTTGGACGTATTGGAGTCAGTCAAGGGCAGTTTTAT GATCAATATTTAAAGTTTATCAGACTGAATAATCAAGCTTTTCCATTTCG TGATTACGATTTGAGTTATTTGACGAAATCAAAATATGATGAAGAATTTT TAGAGAAGGTTTATACAACACCTGAAGTGGATTCACAACAAGCTACATCA AAAGGAGCATCAGATGTCCGTATTACTTACAACAATCACTATGAATTCGA AAACTTTGCAAGGCGTTTTGGATTAATGTCAGATTTCAAAGCTGGAGTAC CTAGAACAGCATATCATGGTGTAGTCACTTTCTTTCGTGGCGGACATCGC ATCTATATAGCTCCGCCCAAAAATTGGAAAGGCTACAGAGAGCATTAAaT GAGAGGAGTGATGAGAATCTTGCTCAATTTTTTGAGCTGTCGTTGGAAGT TGTCTTCAAAATCAATTATCATTGGTATGATTATTTTCTTTGGTGGAAAT TATATTATTCTACGTTCGATGTTTGCCCGGAATTATACTGATGAAACAAA GGTTGGTCACAGAACTGAAGATGATGGTGTTATTGTTAAGCAGAATGTCT ATCATAATAATAGaaaagacaataaaaatgaatttattgaATCTTTAGTT GATAAAAGTCAAAATGTTGGGAATGGGAAAAGTCCACATAAATTTAACCA TGAAACTGAGGCACCTgttggaaatcaaaatcatattgATGTTAAGAATG TTgatcatgaaaataaaaaagatggtAAATTTAAAATTGCTTTATTAATT ATTTCTTGTAATCGAGTTGAAGTACGGCGTTGTTTGGATAAGATTTTTGA ACACAAACCTAAAGATTATCCCATTGAAATAATTGTCAGTCAAGATTGTG GTCACAAGGCAACAGCCGATGTTATCCGATCGTATGGTAATCGAATCAAG TTTATTCAACAGCCTGATTTAGGCCCAGTTCATGGAGTACCTAACAACAT GCATCGTTTTATGGGTTATTATAAGATTTCTCGACATTTTCAGTTTGCAC TTGGTAAAGTTTTTGAAATGACGGATAGTGATAGTGTAATTATTGTGGAA GATGATATAGAAATAgCTCCTGatttctttgattattttttggcAACTCG GAAACTTTTAGAAGTTGACAACACTTTGTTTTGTGTATCTGCTTGGAATG ATAATGGGAAAGAAGACTCCGTTGATCCATCTGCTATTGATGTTTTGTAC AGGTCTGACTTCTTTCCTGGACTTGGCTGGATGATGACTCGTAAACTTTG GAATGAGATTGGGCCTAACTGGCCTAAAGGTTTTTGGGATGATTGGATGA GAGATCCTAAACAACGTAAAGATAGATCATGTATAAGACCAGAGATATCA CGTACAAAAACCTTTGGACGTATTGGAGTCAGTCAAGGGCAGTTTTATGA TCAATATTTAAAGTTTATCAGACTGAATAATCAAGCTTTTCCATTTCGTG ATTACGATTTGAGTTATTTGACGAAATCAAAATATGATGAAGAATTTTTA GAGAAGGTTTATACAACACCTGAAGTGGATTCACAACAAGCTACATCAAA AGGAGCATCAGATGTCCGTATTACTTACAACAATCACTATGAATTCGAAA ACTTTGCAAGGCGTTTTGGATTAATGTCAGATTTCAAAGCTGGAGTACCT AGAACAGCATATCATGGTGTAGTCACTTTCTTTCGTGGCGGACATCGCAT CTATATAGCTCCGCCCAAAAATTGGAAAGGCTACAGAGAGCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000441-exon-sc0000002-1491911889:725982..726800 | TCONS_00000441-exon-sc0000002-1491911889:725982..726800 | Clytia hemisphaerica | exon |
TCONS_00000441-exon-sc0000002-1510915933:725982..726800 | TCONS_00000441-exon-sc0000002-1510915933:725982..726800 | Clytia hemisphaerica | exon |
TCONS_00000441-exon-sc0000002-1575043694:725982..726800 | TCONS_00000441-exon-sc0000002-1575043694:725982..726800 | Clytia hemisphaerica | exon |
TCONS_00000441-exon-sc0000002-1491911889:731931..732637 | TCONS_00000441-exon-sc0000002-1491911889:731931..732637 | Clytia hemisphaerica | exon |
TCONS_00000441-exon-sc0000002-1510915933:731931..732637 | TCONS_00000441-exon-sc0000002-1510915933:731931..732637 | Clytia hemisphaerica | exon |
TCONS_00000441-exon-sc0000002-1575043694:731931..732637 | TCONS_00000441-exon-sc0000002-1575043694:731931..732637 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000002 | supercontig | sc0000002:725982..732637 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR004139 | Glyco_trans_13 |
IPR029044 | Nucleotide-diphossugar_trans |
Vocabulary: Molecular Function
Term | Definition |
GO:0008375 | acetylglucosaminyltransferase activity |
Vocabulary: Biological Process
Term | Definition |
GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006486 |
protein glycosylation |
molecular_function |
GO:0008375 |
acetylglucosaminyltransferase activity |
Blast
BLAST of TCONS_00000441 vs. Swiss-Prot (Human)
Match: MGAT1 (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Homo sapiens GN=MGAT1 PE=1 SV=2) HSP 1 Score: 357.451 bits (916), Expect = 1.560e-117 Identity = 186/378 (49.21%), Postives = 250/378 (66.14%), Query Frame = 3
Query: 363 QNVGNGKSPHKFNHETEAPVGNQNHIDVKNVDHENKKDGKFKIALLIISCNRVEVRRCLDKIFEHKPKDYPIEIIVSQDCGHKATADVIRSYGNRIKFIQQPDLGPVHGVPNNMHRFMGYYKISRHFQFALGKVFEMTXXXXXXXXXXXXXXAPDFFDYFLATRKLLEVDNTLFCVSAWNDNGKEDSVDPSAIDVLYRSDFFPGLGWMMTRKLWNEIGPNWPKGFWDDWMRDPKQRKDRSCIRPEISRTKTFGRIGVSQGQFYDQYLKFIRLNNQAFPFRDYDLSYLTKSKYDEEFLEKVYTTPEVDSQQATS---KGASDVRITYNNHYEFENFARRFGLMSDFKAGVPRTAYHGVVTFFRGGHRIYIAPPKNWKGY 1487
Q +G+ S + T AP Q + V I +L+I+C+R VRRCLDK+ ++P IIVSQDCGH+ TA I SYG+ + I+QPDL + VP + +F GYYKI+RH+++ALG+VF + ++VEDD+E+APDFF+YF AT LL+ D +L+CVSAWNDNGKE VD S ++LYR+DFFPGLGW++ +LW E+ P WPK FWDDWMR P+QR+ R+CIRPEISRT TFGR GVS GQF+DQ+LKFI+LN Q F DLSYL + YD +FL +VY P++ ++ + K +VR+ Y F+ FA+ G+M D K+GVPR Y G+VTF G R+++APP W+GY
Sbjct: 73 QQIGDALSSQRGRVPTAAPPA-QPRVPVTPAPA--------VIPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQAIASYGSAVTHIRQPDLSSI-AVPPDHRKFQGYYKIARHYRWALGQVFRQFRFPAAVVVEDDLEVAPDFFEYFRATYPLLKADPSLWCVSAWNDNGKEQMVDASRPELLYRTDFFPGLGWLLLAELWAELEPKWPKAFWDDWMRRPEQRQGRACIRPEISRTMTFGRKGVSHGQFFDQHLKFIKLNQQFVHFTQLDLSYLQREAYDRDFLARVYGAPQLQVEKVRTNDRKELGEVRVQYTGRDSFKAFAKALGVMDDLKSGVPRAGYRGIVTFQFRGRRVHLAPPLTWEGY 440
The following BLAST results are available for this feature:
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