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TCONS_00000441 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000441
Unique NameTCONS_00000441
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000441 ID=TCONS_00000441|Name=TCONS_00000441|organism=Clytia hemisphaerica|type=transcript|length=1526bp
AGATAGTGGGTGAGCTATAAttctgatttttgaattttcattttagtaTT
TCTgtcaaaaaattatcatttaaaaagtaaaagaaaaaacattatcaaaa
gaTGAGAGGAGTGATGAGAATCTTGCTCAATTTTTTGAGCTGTCGTTGGA
AGTTGTCTTCAAAATCAATTATCATTGGTATGATTATTTTCTTTGGTGGA
AATTATATTATTCTACGTTCGATGTTTGCCCGGAATTATACTGATGAAAC
AAAGGTTGGTCACAGAACTGAAGATGATGGTGTTATTGTTAAGCAGAATG
TCTATCATAATAATAGaaaagacaataaaaatgaatttattgaATCTTTA
GTTGATAAAAGTCAAAATGTTGGGAATGGGAAAAGTCCACATAAATTTAA
CCATGAAACTGAGGCACCTgttggaaatcaaaatcatattgATGTTAAGA
ATGTTgatcatgaaaataaaaaagatggtAAATTTAAAATTGCTTTATTA
ATTATTTCTTGTAATCGAGTTGAAGTACGGCGTTGTTTGGATAAGATTTT
TGAACACAAACCTAAAGATTATCCCATTGAAATAATTGTCAGTCAAGATT
GTGGTCACAAGGCAACAGCCGATGTTATCCGATCGTATGGTAATCGAATC
AAGTTTATTCAACAGCCTGATTTAGGCCCAGTTCATGGAGTACCTAACAA
CATGCATCGTTTTATGGGTTATTATAAGATTTCTCGACATTTTCAGTTTG
CACTTGGTAAAGTTTTTGAAATGACGGATAGTGATAGTGTAATTATTGTG
GAAGATGATATAGAAATAgCTCCTGatttctttgattattttttggcAAC
TCGGAAACTTTTAGAAGTTGACAACACTTTGTTTTGTGTATCTGCTTGGA
ATGATAATGGGAAAGAAGACTCCGTTGATCCATCTGCTATTGATGTTTTG
TACAGGTCTGACTTCTTTCCTGGACTTGGCTGGATGATGACTCGTAAACT
TTGGAATGAGATTGGGCCTAACTGGCCTAAAGGTTTTTGGGATGATTGGA
TGAGAGATCCTAAACAACGTAAAGATAGATCATGTATAAGACCAGAGATA
TCACGTACAAAAACCTTTGGACGTATTGGAGTCAGTCAAGGGCAGTTTTA
TGATCAATATTTAAAGTTTATCAGACTGAATAATCAAGCTTTTCCATTTC
GTGATTACGATTTGAGTTATTTGACGAAATCAAAATATGATGAAGAATTT
TTAGAGAAGGTTTATACAACACCTGAAGTGGATTCACAACAAGCTACATC
AAAAGGAGCATCAGATGTCCGTATTACTTACAACAATCACTATGAATTCG
AAAACTTTGCAAGGCGTTTTGGATTAATGTCAGATTTCAAAGCTGGAGTA
CCTAGAACAGCATATCATGGTGTAGTCACTTTCTTTCGTGGCGGACATCG
CATCTATATAGCTCCGCCCAAAAATTGGAAAGGCTACAGAGAGCATTAAT
ATTACTTCTATTTTAATCTAGAATTT
Run BLAST on NCBI

protein sequence of TCONS_00000441-protein

>TCONS_00000441-protein ID=TCONS_00000441-protein|Name=TCONS_00000441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MRGVMRILLNFLSCRWKLSSKSIIIGMIIFFGGNYIILRSMFARNYTDET
KVGHRTEDDGVIVKQNVYHNNRKDNKNEFIESLVDKSQNVGNGKSPHKFN
HETEAPVGNQNHIDVKNVDHENKKDGKFKIALLIISCNRVEVRRCLDKIF
EHKPKDYPIEIIVSQDCGHKATADVIRSYGNRIKFIQQPDLGPVHGVPNN
MHRFMGYYKISRHFQFALGKVFEMTDSDSVIIVEDDIEIAPDFFDYFLAT
RKLLEVDNTLFCVSAWNDNGKEDSVDPSAIDVLYRSDFFPGLGWMMTRKL
WNEIGPNWPKGFWDDWMRDPKQRKDRSCIRPEISRTKTFGRIGVSQGQFY
DQYLKFIRLNNQAFPFRDYDLSYLTKSKYDEEFLEKVYTTPEVDSQQATS
KGASDVRITYNNHYEFENFARRFGLMSDFKAGVPRTAYHGVVTFFRGGHR
IYIAPPKNWKGYREH
Run BLAST on NCBI

transcript from alignment at sc0000002:725982..732637+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000441 ID=TCONS_00000441|Name=TCONS_00000441|organism=Clytia hemisphaerica|type=transcript|length=6656bp|location=Sequence derived from alignment at sc0000002:725982..732637+ (Clytia hemisphaerica)
AGATAGTGGGTGAGCTATAAttctgatttttgaattttcattttagtaTT TCTgtcaaaaaattatcatttaaaaagtaaaagaaaaaacattatcaaaa gaTGAGAGGAGTGATGAGAATCTTGCTCAATTTTTTGAGCTGTCGTTGGA AGTTGTCTTCAAAATCAATTATCATTGGTATGATTATTTTCTTTGGTGGA AATTATATTATTCTACGTTCGATGTTTGCCCGGAATTATACTGATGAAAC AAAGGTTGGTCACAGAACTGAAGATGATGGTGTTATTGTTAAGCAGAATG TCTATCATAATAATAGaaaagacaataaaaatgaatttattgaATCTTTA GTTGATAAAAGTCAAAATGTTGGGAATGGGAAAAGTCCACATAAATTTAA CCATGAAACTGAGGCACCTgttggaaatcaaaatcatattgATGTTAAGA ATGTTgatcatgaaaataaaaaagatggtAAATTTAAAATTGCTTTATTA ATTATTTCTTGTAATCGAGTTGAAGTACGGCGTTGTTTGGATAAGATTTT TGAACACAAACCTAAAGATTATCCCATTGAAATAATTGTCAGTCAAGATT GTGGTCACAAGGCAACAGCCGATGTTATCCGATCGTATGGTAATCGAATC AAGTTTATTCAACAGCCTGATTTAGGCCCAGTTCATGGAGTACCTAACAA CATGCATCGTTTTATGGGTTATTATAAGATTTCTCGACATTTTCAGTTTG CACTTGGTAAAGTTTTTGAAATGACGGATAGTGATAGTGTAATTATTGTG GAAGATGATATAGAAATAggtatattttttttactttttacatatCTTTT CGAAATCTTTCTAGTTGAGAATTATTAATGCTACATAAAGAgactagttt gagtaaagaaaacgatttaatACAATTCACTGAAGATTTCCATCCtggat ggcatgaaactttgagtatgaaattaacttaaatagttttctttactcaa actagtatAAAGCTCTGTTATCATTAACATTGAGCACTGCTATTGGTTTT GGCTTACACAAAGTAGTGCTTCACAAGAGATGTATTTTCATGGGTTTTTG TTACAATTTGAGAGAATTTACTCTTTCCTGTTGGGTtgggtggaggatat ataatttttgaagtGATCTACCagtaaatattttgatttttcatcgCCTG GACACGTGCCTTACCTTTGGACAAGCATCGACCTCTGAGACACTAAAATG AAATCCATGGAGCATTAATTCATCTAATCGATAAGGCAATTTGATAAATT TGTNCCCTAGTCTTCATAGATATACCATAAGAGGTATAAGGAGGGTCAGA ATCCACTTATTGATCTGCTGAGCATAgtgaggaaaatttttttcaatctg tgattccgacttcctattattcctatctttaaagaagggtgttggaatta gatgAGCGATGTCACCATGACACCAAGTTATGATACTACATTTCAAGCTA GCTGGTATGGTAGGACATAAACGgtggttttgaaaaataatcttCAAATT TACATCCAGGAAGGGAACGTTTTTTAgcagaaatatttttccaaattcaa gagaatttattcagcttttttttgtaaaagaaattcgaaaatgagttttt gaaacTTCTTGTACGACACAGCAAAGTACCAGGGGTACTAATATCCATAG CGCTAGGCACCACAGATATCTAtatacttgaaattttttgcattttctta gTTTAGCCTCTATTAATTAGAACAACCTATACTAGTAGGTATATAGTATA TAGTTTTACAATCTACACTTGCACAACTATAACAGCTACAGAAAACACTC TGACTCCAAATTTCTTGTTTGGCCCAAAGACGTTGAAAACGGTCCAGTGT TTTTTGTGGATCGCCTCGTACATCAAATAAAGGGAGACAAgaaagtaaag ttttttttaaaggatAGAATCATTAATCTTTTATGTGCGGCTCCACCATG TGGAAGGACACGCTTTTGAGTACTAATGCATTATGTATCTGACATGAGAA AAGTGTCTAGTGGGAGTGTGTATGACGTATCCATTCCAAATGAAATTgtc taataaaatattttttttcagtcttGATTACTCTCAGGTATCTAATAGCC CGGGGGAGGGTTGGAATAAgtgataatattttcaaaaattaattagcggg ggggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTATG GTGATCGAATCAAGTTTATTCAACAGCCTGATTTAGGCCCAGTTCATGGA GTACCTAACAACATGCATCGTTTTATGGGTTATTATAAGATTTCTCGACA TTTTCAGTTTGCACTTGGTAAAGTTTTTGAAATGACGGATAGTGATAGTG TAATTATTGTGGAAGATGATATAGAAATAggtatattttttttacttttt acatatCTTTTCGAAATCTTTCTAGTTGAGAATTATTAATGCTACATAAA GAgactagtttgagtaaagaaaacgatttaatACAATTCACTGAAGATTT CCATCCtggatggcatgaaactttgagtatgaaattaacttaaatagttt tctttactcaaactagtatAAAGCTCTGTTATCATTAACATTGAGCACTG CTATTGGTTTTGGCTTACACAAAGTAGTGCTTCACAAGAGATGTATTTTC ATGGGTTTTTGTTACAATTTCAGAGAATTTACTCTTTCCTGTTGGGTtgg gtggaggatatataatttttgaagtGATCTACCagtaaatattttaattt ttcatcgcCTGGACACGTGCCTTACCTTTGGACAAGCATCGACCTCTGAG ACACTAAAATGAAATCCATGGAGCATTAATTCATCTAATCGATAAGGcaa tttgataaatttgttcTATGCTATATCTTCCATCACCTAATGACGATcca ttttggtttttaaaatgTGGATTTTGAAGATGTGTAACTGTTTGTCCAAA ATAAATTGTTCATATTTATATAAAAtccatcatttttttcttcttatagC TCCTGatttctttgattattttttggcAACTCGGAAACTTTTAGAAGTTG ACAACACTTTGTTTTGTGTATCTGCTTGGAATGATAATGGGAAAGAAGAC TCCGTTGATCCATCTGCTATTGATGTTTTGTACAGGTCTGACTTCTTTCC TGGACTTGGCTGGATGATGACTCGTAAACTTTGGAATGAGATTGGGCCTA ACTGGCCTAAAGGTTTTTGGGATGATTGGATGAGAGATCCTAAACAACGT AAAGATAGATCATGTATAAGACCAGAGATATCACGTACAAAAACCTTTGG ACGTATTGGAGTCAGTCAAGGGCAGTTTTATGATCAATATTTAAAGTTTA TCAGACTGAATAATCAAGCTTTTCCATTTCGTGATTACGATTTGAGTTAT TTGACGAAATCAAAATATGATGAAGAATTTTTAGAGAAGGTTTATACAAC ACCTGAAGTGGATTCACAACAAGCTACATCAAAAGGAGCATCAGATGTCC GTATTACTTACAACAATCACTATGAATTCGAAAACTTTGCAAGGCGTTTT GGATTAATGTCAGATTTCAAAGCTGGAGTACCTAGAACAGCATATCATGG TGTAGTCACTTTCTTTCGTGGCGGACATCGCATCTATATAGCTCCGCCCA AAAATTGGAAAGGCTACAGAGAGCATTAATATTACTTCTATTTTAATCTA GAATTT

Coding sequence (CDS) from alignment at sc0000002:725982..732637+

>TCONS_00000441 ID=TCONS_00000441|Name=TCONS_00000441|organism=Clytia hemisphaerica|type=CDS|length=2796bp|location=Sequence derived from alignment at sc0000002:725982..732637+ (Clytia hemisphaerica)
aTGAGAGGAGTGATGAGAATCTTGCTCAATTTTTTGAGCTGTCGTTGGAA
GTTGTCTTCAAAATCAATTATCATTGGTATGATTATTTTCTTTGGTGGAA
ATTATATTATTCTACGTTCGATGTTTGCCCGGAATTATACTGATGAAACA
AAGGTTGGTCACAGAACTGAAGATGATGGTGTTATTGTTAAGCAGAATGT
CTATCATAATAATAGaaaagacaataaaaatgaatttattgaATCTTTAG
TTGATAAAAGTCAAAATGTTGGGAATGGGAAAAGTCCACATAAATTTAAC
CATGAAACTGAGGCACCTgttggaaatcaaaatcatattgATGTTAAGAA
TGTTgatcatgaaaataaaaaagatggtAAATTTAAAATTGCTTTATTAA
TTATTTCTTGTAATCGAGTTGAAGTACGGCGTTGTTTGGATAAGATTTTT
GAACACAAACCTAAAGATTATCCCATTGAAATAATTGTCAGTCAAGATTG
TGGTCACAAGGCAACAGCCGATGTTATCCGATCGTATGGTAATCGAATCA
AGTTTATTCAACAGCCTGATTTAGGCCCAGTTCATGGAGTACCTAACAAC
ATGCATCGTTTTATGGGTTATTATAAGATTTCTCGACATTTTCAGTTTGC
ACTTGGTAAAGTTTTTGAAATGACGGATAGTGATAGTGTAATTATTGTGG
AAGATGATATAGAAATAgCTCCTGatttctttgattattttttggcAACT
CGGAAACTTTTAGAAGTTGACAACACTTTGTTTTGTGTATCTGCTTGGAA
TGATAATGGGAAAGAAGACTCCGTTGATCCATCTGCTATTGATGTTTTGT
ACAGGTCTGACTTCTTTCCTGGACTTGGCTGGATGATGACTCGTAAACTT
TGGAATGAGATTGGGCCTAACTGGCCTAAAGGTTTTTGGGATGATTGGAT
GAGAGATCCTAAACAACGTAAAGATAGATCATGTATAAGACCAGAGATAT
CACGTACAAAAACCTTTGGACGTATTGGAGTCAGTCAAGGGCAGTTTTAT
GATCAATATTTAAAGTTTATCAGACTGAATAATCAAGCTTTTCCATTTCG
TGATTACGATTTGAGTTATTTGACGAAATCAAAATATGATGAAGAATTTT
TAGAGAAGGTTTATACAACACCTGAAGTGGATTCACAACAAGCTACATCA
AAAGGAGCATCAGATGTCCGTATTACTTACAACAATCACTATGAATTCGA
AAACTTTGCAAGGCGTTTTGGATTAATGTCAGATTTCAAAGCTGGAGTAC
CTAGAACAGCATATCATGGTGTAGTCACTTTCTTTCGTGGCGGACATCGC
ATCTATATAGCTCCGCCCAAAAATTGGAAAGGCTACAGAGAGCATTAAaT
GAGAGGAGTGATGAGAATCTTGCTCAATTTTTTGAGCTGTCGTTGGAAGT
TGTCTTCAAAATCAATTATCATTGGTATGATTATTTTCTTTGGTGGAAAT
TATATTATTCTACGTTCGATGTTTGCCCGGAATTATACTGATGAAACAAA
GGTTGGTCACAGAACTGAAGATGATGGTGTTATTGTTAAGCAGAATGTCT
ATCATAATAATAGaaaagacaataaaaatgaatttattgaATCTTTAGTT
GATAAAAGTCAAAATGTTGGGAATGGGAAAAGTCCACATAAATTTAACCA
TGAAACTGAGGCACCTgttggaaatcaaaatcatattgATGTTAAGAATG
TTgatcatgaaaataaaaaagatggtAAATTTAAAATTGCTTTATTAATT
ATTTCTTGTAATCGAGTTGAAGTACGGCGTTGTTTGGATAAGATTTTTGA
ACACAAACCTAAAGATTATCCCATTGAAATAATTGTCAGTCAAGATTGTG
GTCACAAGGCAACAGCCGATGTTATCCGATCGTATGGTAATCGAATCAAG
TTTATTCAACAGCCTGATTTAGGCCCAGTTCATGGAGTACCTAACAACAT
GCATCGTTTTATGGGTTATTATAAGATTTCTCGACATTTTCAGTTTGCAC
TTGGTAAAGTTTTTGAAATGACGGATAGTGATAGTGTAATTATTGTGGAA
GATGATATAGAAATAgCTCCTGatttctttgattattttttggcAACTCG
GAAACTTTTAGAAGTTGACAACACTTTGTTTTGTGTATCTGCTTGGAATG
ATAATGGGAAAGAAGACTCCGTTGATCCATCTGCTATTGATGTTTTGTAC
AGGTCTGACTTCTTTCCTGGACTTGGCTGGATGATGACTCGTAAACTTTG
GAATGAGATTGGGCCTAACTGGCCTAAAGGTTTTTGGGATGATTGGATGA
GAGATCCTAAACAACGTAAAGATAGATCATGTATAAGACCAGAGATATCA
CGTACAAAAACCTTTGGACGTATTGGAGTCAGTCAAGGGCAGTTTTATGA
TCAATATTTAAAGTTTATCAGACTGAATAATCAAGCTTTTCCATTTCGTG
ATTACGATTTGAGTTATTTGACGAAATCAAAATATGATGAAGAATTTTTA
GAGAAGGTTTATACAACACCTGAAGTGGATTCACAACAAGCTACATCAAA
AGGAGCATCAGATGTCCGTATTACTTACAACAATCACTATGAATTCGAAA
ACTTTGCAAGGCGTTTTGGATTAATGTCAGATTTCAAAGCTGGAGTACCT
AGAACAGCATATCATGGTGTAGTCACTTTCTTTCGTGGCGGACATCGCAT
CTATATAGCTCCGCCCAAAAATTGGAAAGGCTACAGAGAGCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000282XLOC_000282Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000441-proteinTCONS_00000441-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000441-exon-sc0000002-1491911889:725982..726800TCONS_00000441-exon-sc0000002-1491911889:725982..726800Clytia hemisphaericaexon
TCONS_00000441-exon-sc0000002-1510915933:725982..726800TCONS_00000441-exon-sc0000002-1510915933:725982..726800Clytia hemisphaericaexon
TCONS_00000441-exon-sc0000002-1575043694:725982..726800TCONS_00000441-exon-sc0000002-1575043694:725982..726800Clytia hemisphaericaexon
TCONS_00000441-exon-sc0000002-1491911889:731931..732637TCONS_00000441-exon-sc0000002-1491911889:731931..732637Clytia hemisphaericaexon
TCONS_00000441-exon-sc0000002-1510915933:731931..732637TCONS_00000441-exon-sc0000002-1510915933:731931..732637Clytia hemisphaericaexon
TCONS_00000441-exon-sc0000002-1575043694:731931..732637TCONS_00000441-exon-sc0000002-1575043694:731931..732637Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:725982..732637 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.83532 4.45599 2.53157 2.2729 14.6337 11.1443 10.626 11.2509 6.01222 6.80635 8.84386 5.84436 6.98092 4.57495 6.67081 6.62336 8.31524 9.45848 7.75362 8.70338 7.55266 7.709 13.0756 13.8432 7.36464 10.8413 9.50991 6.07043 19.7722 15.3124
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004139Glyco_trans_13
IPR029044Nucleotide-diphossugar_trans
Vocabulary: Molecular Function
TermDefinition
GO:0008375acetylglucosaminyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
molecular_function GO:0008375 acetylglucosaminyltransferase activity
Blast
BLAST of TCONS_00000441 vs. Swiss-Prot (Human)
Match: MGAT1 (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Homo sapiens GN=MGAT1 PE=1 SV=2)

HSP 1 Score: 357.451 bits (916), Expect = 1.560e-117
Identity = 186/378 (49.21%), Postives = 250/378 (66.14%), Query Frame = 3
Query:  363 QNVGNGKSPHKFNHETEAPVGNQNHIDVKNVDHENKKDGKFKIALLIISCNRVEVRRCLDKIFEHKPKDYPIEIIVSQDCGHKATADVIRSYGNRIKFIQQPDLGPVHGVPNNMHRFMGYYKISRHFQFALGKVFEMTXXXXXXXXXXXXXXAPDFFDYFLATRKLLEVDNTLFCVSAWNDNGKEDSVDPSAIDVLYRSDFFPGLGWMMTRKLWNEIGPNWPKGFWDDWMRDPKQRKDRSCIRPEISRTKTFGRIGVSQGQFYDQYLKFIRLNNQAFPFRDYDLSYLTKSKYDEEFLEKVYTTPEVDSQQATS---KGASDVRITYNNHYEFENFARRFGLMSDFKAGVPRTAYHGVVTFFRGGHRIYIAPPKNWKGY 1487
            Q +G+  S  +    T AP   Q  + V              I +L+I+C+R  VRRCLDK+  ++P      IIVSQDCGH+ TA  I SYG+ +  I+QPDL  +  VP +  +F GYYKI+RH+++ALG+VF      + ++VEDD+E+APDFF+YF AT  LL+ D +L+CVSAWNDNGKE  VD S  ++LYR+DFFPGLGW++  +LW E+ P WPK FWDDWMR P+QR+ R+CIRPEISRT TFGR GVS GQF+DQ+LKFI+LN Q   F   DLSYL +  YD +FL +VY  P++  ++  +   K   +VR+ Y     F+ FA+  G+M D K+GVPR  Y G+VTF   G R+++APP  W+GY
Sbjct:   73 QQIGDALSSQRGRVPTAAPPA-QPRVPVTPAPA--------VIPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQAIASYGSAVTHIRQPDLSSI-AVPPDHRKFQGYYKIARHYRWALGQVFRQFRFPAAVVVEDDLEVAPDFFEYFRATYPLLKADPSLWCVSAWNDNGKEQMVDASRPELLYRTDFFPGLGWLLLAELWAELEPKWPKAFWDDWMRRPEQRQGRACIRPEISRTMTFGRKGVSHGQFFDQHLKFIKLNQQFVHFTQLDLSYLQREAYDRDFLARVYGAPQLQVEKVRTNDRKELGEVRVQYTGRDSFKAFAKALGVMDDLKSGVPRAGYRGIVTFQFRGRRVHLAPPLTWEGY 440          
The following BLAST results are available for this feature:
BLAST of TCONS_00000441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MGAT11.560e-11749.21Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
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