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TCONS_00000425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000425
Unique NameTCONS_00000425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000425 ID=TCONS_00000425|Name=TCONS_00000425|organism=Clytia hemisphaerica|type=transcript|length=1602bp
GTGAAACTTTATTGAGCAGAGGTTGTCCTATATCTTATactatttttctc
attttctgaCTGCCTGAAACTGGTTTAATGTCGAAAAACCCATCTTATGC
TGTCACctttattttttatactttcagaaatgtaacaaaaaataaaaaaa
cgaaaTTGCAAAAATTGTATAAAAGGTTCTCCTATTCCCTGGTATATCAA
ACAGGGAAGGAGAAAAAAGGAGAATTataccaacaaaacaaaaatggcta
CAATAAACAAAGACAGTGAAGAGGCAAGTGAGAAGCCGGTCAATAAAATC
TTGAATGCACATCGGCCTTTACAACCTTGCAAAAGCGCTGCTGGTCGATT
ACAAGatgagaaatataaatcaacaaACGACATGGTCAAATCTTCATCAG
AGTTATCTGTTAATGATATAATGCCCAGGAGACGTTCTAGATCAGCTCCT
CTAACATTAGAGGCATCCATAGTAGCTACTGAACTAACACGTTTAAGTGA
TGCACTTGCAACTAAATACACTTTACAGAAAGTATCTGTTTTGAATAGGA
TTCGAAGACACACTCTTGCTTCACCAAGTGAAAGGGAGCACGATAGGAGA
TCTTTTCATTTTGATTACCACAATTACCAGAAccttcaaattgaaaattt
aacaatCGAAGAAGGAGAGGAAACTCCTCCTGAATATCAACGTGGAACAT
CAGTTTAAGCAAtgaatttgttgattttttggaaatatttagTTTTTTCA
ATATACATGACAGTCTGATTTTGGATGTCATTGACAATTTAGACTGTTAT
TATTAATTGAAATGATGGGTCTATATACGTATACACCAAACAAATTTTTA
GATTGTTTTACCGTAtagtaaatatgatatttttaCTTGCAtattttttg
tacttttggTACAGTTTCATCTAATACGTCGGTCGTCGGTCGCGTTGTAC
ACTTTTTGACTGCTCAATGGAACATTTTGCAGCATTTTTGTAAATTGTTC
AGCATTTGTACATTATGATAAATTATGATATAAGCCGTATTTTGTACATA
AAATTTGagtattttcgccattttgcgttgattttttttcagacttGAAT
AATAATTTATTTCTTCAGTAAAAACACACTTCAGAgatataattttcttc
tttaggGAAAACTTTTAACTATGCTTAACATTATTGTAGCCTGCTCCTTT
CAGATTTATTTAACCCGGCTGCAAATGAGCTTGAACGTACTATGAAAATG
TTAAGTTTCAGCTGGAGTTAGATATAAAATGGATAATTGATTTTCAAGAA
ATGTTTGCATTTTGTGTTAGGAAAGTTAGGTTAATATATTTGTAATATAG
GCGTATTTTAGTATATAGCTAATTATTTTCGAATCCTTTTATTTTACTAG
TCATGTTATTgtagttattttgatttttgtagaatagataattattattt
tgaaaaaaaatttcaaaatctataGATAGGCGATACTCTCTCcgaaatat
tttctattttgagaattttgatttgatcatcTTATCTCACTATTATTGTC
TATGTTACTGGTTCAATATGGCAAAGGTTTCAGAgactttccaatttttt
tc
Run BLAST on NCBI

transcript from alignment at sc0000002:263262..265673+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000425 ID=TCONS_00000425|Name=TCONS_00000425|organism=Clytia hemisphaerica|type=transcript|length=2412bp|location=Sequence derived from alignment at sc0000002:263262..265673+ (Clytia hemisphaerica)
GTGAAACTTTATTGAGCAGAGGTTGTCCTATATCTTATactatttttctc attttctgaCTGCCTGAAACTGGTTTAATGTCGAAAAACCCATCTTATGC TGTCACctttattttttatactttcagaaatgtaacaaaaaataaaaaaa cgaaaTTGCAAAAATTGTATAAAAGGTTCTCCTATTCCCTGGTATATCAA ACAGGGAAGGAGAAAAAAGGAGAATTataccaacaaaacaaaaatggcta CAATAAACAAAGACAGTGAAGAGGCAAGTGAGAAGCCGGTCAATAAAATC TTGAATGCACATCGGCCTTTACAACCTTGCAAAAGCGCTGCTGGTCGATT ACAAGatgagaaatataaatcaacaaACGACATGGTCAAATCTTCATCAG AGTTATCTGTTAATGATATAATGCCCAGGAGACGTTCTAGATCAGCTCCT CTAACATTAGAGGCATCCATAGTAGCTACTGAACTAACACGTTTAAGTGA TGCACTTGCAACTAAATACACTTTACAGAAAGTATCTGTTTTGAATAGGA TTCGAAGACACACTCTTGCTTCACCAAGTGAAAGGGAGCACGATAGGAGA TCTTTTCATTTTGATTACCACAATTACCAGAAccttcaaattgaaaattt aacaatCGAAGAAGGAGAGGAAACTCCTCCTGAATATCAACGTGGAACAT CAGTTTAAGCAAtgaatttgttgattttttggaaatatttagTTTTTTCA ATATACATGACAGTCTGATTTTGGATGTCATTGACAATTTAGACTGTTAT TATTAATTGAAATGATGGGTCTATATACGTATACACCAAACAAATTTTTA GATTGTTTTACCGTAtagtaaatatgatatttttaCTTGCAtattttttg tacttttggTACAGTTTCATCTAATACGTCGGTCGTCGGTCGCGTTGTAC ACTTTTTGACTGCTCAATGGAACATTTTGCAGCATTTTTGTAAATTGTTC AGCATTTGTACATTATGATAAATTATGATATAAGCCGTATTTTGTACATA AAATTTGagtattttcgccattttgcgttgattttttttcagacttGAAT AATAATTTATTTCTTCAGTAAAAACACACTTCAGAgatataattttcttc tttaggGAAAACTTTTAACTATGCTTAACATTATTGTAGCCTGCTCCTTT CAGATTTATTTAACCCGGCTGCAAATGAGCTTGAACGTACTATGAAAATG TTAAGTTTCAGCTGGAGTTAGATATAAAATGGATAATTGATTTTCAAGAA ATGTTTGCATTTTGTGTTAGGAAAGTTAGGTTAATATATTTGTAATATAG GCGTATTTTAGTATATAGCTNCCAGAAccttcaaattgaaaatttaacaa tCGAAGAAGGAGAGGAAACTCCTCCTGAATATCAACGTGGAACATCAGTT TAAGCAAtgaatttgttgattttttggaaatatttagTTTTTTCAATATA CATGACAGTCTGATTTTGGATGTCATTGACAATTTAGACTGTTATTATTA ATTGAAATGATGGGTCTATATACGTATACACCAAACAAATTTTTAGATTG TTTTACCGTAtagtaaatatgatatttttaCTTGCAtattttttgtactt ttggTACAGTTTCATCTAATACGTCGGTCGTCGGTCGCGTTGTACACTTT TTGACTGCTCAATGGAACATTTTGCAGCATTTTTGTAAATTGTTCAGCAT TTGTACATTATGATAAATTATGATATAAGCCGTATTTTGTACATAAAATT TGagtattttcgccattttgcgttgattttttttcagacttGAATAATAA TTTATTTCTTCAGTAAAAACACACTTCAGAgatataattttcttctttag gGAAAACTTTTAACTATGCTTAACATTATTGTAGCCTGCTCCTTTCAGAT TTATTTAACCCGGCTGCAAATGAGCTTGAACGTACTATGAAAATGTTAAG TTTCAGCTGGAGTTAGATATAAAATGGATAATTGATTTTCAAGAAATGTT TGCATTTTGTGTTAGGAAAGTTAGGTTAATATATTTGTAATATAGGCGTA TTTTAGTATATAGCTAATTATTTTCGAATCCTTTTANAGGTTAATATATT TGTAATATAGGCGTATTTTAGTATATAGCTAATTATTTTCGAATCCTTTT ATTTTACTAGTCATGTTATTgtagttattttgatttttgtagaatagata attattattttgaaaaaaaatttcaaaatctataGATAGGCGATACTCTC TCcgaaatattttctattttgagaattttgatttgatcatcTTATCTCAC TATTATTGTCTATGTTACTGGTTCAATATGGCAAAGGTTTCAGAgacttt ccaatttttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000276XLOC_000276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000425-exon-sc0000002-1491911889:263262..264590TCONS_00000425-exon-sc0000002-1491911889:263262..264590Clytia hemisphaericaexon
TCONS_00000425-exon-sc0000002-1510915933:263262..264590TCONS_00000425-exon-sc0000002-1510915933:263262..264590Clytia hemisphaericaexon
TCONS_00000425-exon-sc0000002-1575043694:263262..264590TCONS_00000425-exon-sc0000002-1575043694:263262..264590Clytia hemisphaericaexon
TCONS_00000425-exon-sc0000002-1491911889:265401..265673TCONS_00000425-exon-sc0000002-1491911889:265401..265673Clytia hemisphaericaexon
TCONS_00000425-exon-sc0000002-1510915933:265401..265673TCONS_00000425-exon-sc0000002-1510915933:265401..265673Clytia hemisphaericaexon
TCONS_00000425-exon-sc0000002-1575043694:265401..265673TCONS_00000425-exon-sc0000002-1575043694:265401..265673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:263262..265673 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000148261 1.56855 2.06403e-05 0.000148174 0.00103458 0.000520943 0.00147416 0.000632808 0.000177323 0.00157035 0.00185517 0.000782923 2.36091 6.87905e-05 0.000147036 0.000138118 0.000628152 2.73141 0.000744157 0.000269605 0.00045695 0.000771859 0.000284708 0.000187004 0.000757003 0.000890455 0.000318119 0.000455719 0.000319514 0.00104153
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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