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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000407 ID=TCONS_00000407|Name=TCONS_00000407|organism=Clytia hemisphaerica|type=transcript|length=2031bpRun BLAST on NCBI transcript from alignment at sc0000002:139126..199422+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000407 ID=TCONS_00000407|Name=TCONS_00000407|organism=Clytia hemisphaerica|type=transcript|length=60297bp|location=Sequence derived from alignment at sc0000002:139126..199422+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000407 vs. Swiss-Prot (Human)
Match: KI26B (Kinesin-like protein KIF26B OS=Homo sapiens GN=KIF26B PE=2 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 3.620e-67 Identity = 148/384 (38.54%), Postives = 227/384 (59.11%), Query Frame = 1
Query: 916 AMTSQFFVEAAXXXXXXXXXXXXXXXXXXXXXXXLFPTNFTNMLKQSSPSNPPGLFKYMGRRVD----GKVSVMLRVQPSI-NDQSDNS-LIEIDLRKKQISFLQP---NAPSSTPLDANQAPPPSQPKYFGFDNIFTPEERHDRISSGSLLDVLHAVINGGDGALVTYGGPGTGKTRTMVGQDGSSTTAGILPCAIAWLYSLIDDCKQRTGARISIRVSAVEVVGRNEELKDLLADQASGTDSIDSHSASPGIYLREDPVGGINLENVSEPQAANKEKAGFYLDAALASRSAEKD--NQGVTQNSHMIFTFHIYQYRVEKNARKIPSGSVPQYSGGRSRLHLIDL-SYVNQNFEEKTSQPSQAPSHAALGQIMITMLNGNKKV 2031
++ + FF AA+K N+ + + LF T+F+ +L+ S P PP L + + + D GKV VMLR+ ++ D S++S +++D RKKQI+ P ++ NQ PP K F FD +F + + +G++ +V+ +V+NG DG + +G GK+ TM+G+D S GI+PCAI+WL+ LI++ K++TGAR S+RVSAVEV G+ E L+DLL++ A+G+ SPG+YL EDP+ G L+N SE +A EKA F+LDAA+ASR + + ++ +NSH+ FT HIYQYR+EK+ + SGGRSRLHLIDL S V + + S +ALG +++ ++NG+K +
Sbjct: 381 SVAASFFARAAQKLNLSSKKKKHRPSTSSAAEPPLFATSFSGILQTSPPPAPPCLLRAVNKVKDTPGLGKVKVMLRICSTLARDTSESSSFLKVDPRKKQITLYDPLTCGGQNAFQKRGNQVPP----KMFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGKDDSMQNLGIIPCAISWLFKLINERKEKTGARFSVRVSAVEVWGKEENLRDLLSEVATGS---LQDGQSPGVYLCEDPICGTQLQNQSELRAPTAEKAAFFLDAAIASRRSHQQDCDEDDHRNSHVFFTLHIYQYRMEKSGKG-------GMSGGRSRLHLIDLGSCVKALSKNREGGSGLCLSLSALGNVILALVNGSKHI 750 The following BLAST results are available for this feature:
BLAST of TCONS_00000407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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