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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000403 ID=TCONS_00000403|Name=TCONS_00000403|organism=Clytia hemisphaerica|type=transcript|length=179bp
AGTCACCTTACCACATGCTGACAACAGGCGCCAAAGCCGAGATGTTTATT
CTCTACATCAGTAAGGAATCGTTAAACATTCATGTGACATCACCAGGGGA
TATAATCGAAAAATGTTTAAACACAGTAACACGATTCAAGATTGAAGAAC
ATTGGATGTCAAGAGACTTTGATCAGACA Run BLAST on NCBI transcript from alignment at sc0000002:127258..130649+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000403 ID=TCONS_00000403|Name=TCONS_00000403|organism=Clytia hemisphaerica|type=transcript|length=3392bp|location=Sequence derived from alignment at sc0000002:127258..130649+ (Clytia hemisphaerica)
AGTCACCTTACCACATGCTGACAACAGGCGCCAAAGCCGAGATGTTTATT
CTCTACATCAGTAAGGAATCGTTAAACATTCATGTGACATCACCAGGGGA
TATAATCGAAAAATGTGAgattgtttttcaaatttatttcttattttctt
ttaaatattttaaatctcTCTCACACCAGTAATAAGTTAGACTTTATAAA
TCATTTTCTGGATATTATTCGTCGGATATTAGTATATAGGAATAGGTCAG
TTGGAACTGCTCACAAGTTTCTGTCTCTAATGCGTTGATAATTTTAGTCT
AGCTGGTCTAGCGAAATTAGTTAAGCGAAAATTATCGTACCGTATTTTTA
CAAAAGTCCGCTCAAAAATCAAATTNTCGTTGATAATTTTAGTCTAGCGA
AATTAGTAACGGCGAAAATTATCGTACCGTATTTTTACAAAAGTCCgctc
aaaaatcaaattacTTTCTGAAGTACTGATTGGTTTATTTGGCTCAATTA
CATCATAATTTTGAGACTTTGGGATTGATTTGATTGTCGAGCGGACATTT
GTATTGTAGAGCCGTATAAACGGTACATAGGCCATTTCatagtcgaaatg
gatcatgggtaatcaggactgattgcgcccgATAACGGTTCCCCGTTAGG
TTAGACGcaataaaaatcttcaaaaattttcaaaacattggaCCAATAGG
AAGTCGttattacccattacgctttgcgactgtggaATGACCTATAAAGA
TTTATGGTTGGTTTTGTGGTTCGATACCGCTAAATTTTGAATCCAAGCCT
AGCCCCCAATAGCTGCTAGTCGTAGTAAGTAAAAGTCTCGATTTACGTAG
TGTAGAATTATTTCTAAAAACATGATTTTTAGCTGTGATAGGTCAAACTC
ACTTGTCAAACAATTTGATAGCTGTCAGCCTAGCTTCAGCCCAGTTTAGT
TTCAGGGTGGTATCGCATTAGATTTATTTTCCATGGTAGGATTTTTGTTG
GCAGTTGCTTGTGTTTTATAAGCTTGATTTTACAGTGGAGCCTCTATAAT
AACTGAAACACGCCCGGGGAACCaaatctttttcgaaaattttcgagtta
tggacACCGAGTTATATTTGTAAGGCACTTTAAACTGAAGGGACAAAAAa
ctgttcgaattaaggagataCTTGGGTAAGAGGTTTATTATTTTTGCACT
TAGATACAGAAATCAGTCCAGTTAAGATTTTTAACGCTATTCCCCATCCT
AATTTAATAGCCTTGGATAATTTCGTAGAGTTGTTTTCTTTCAACTGAAG
TgaattttttaagtaaaaatttagaaaaacatttccAAAGCAAGCTAACT
AAACAGACAGTTCGCATTTTCTGTTCTTGTcgaaatttatttgttttttg
tgCAAGCTTNACTAAACAGACAGTTTGCATTTTCTGTTCTTGTcgaaatt
tatttgttttttgtgCAAGCTTGAACATAACAGCAACACCTTTTGATTCT
TACTTGTCGTACTTAACTCTCTTACGATCTCACTCAAGCATGATTAGCCT
CCGGACCCAGGGATTAGCCTATTTTATAGTTGAGTTCTCACTTCCTGATT
TAACTCTCACTCCCAAATATCTTTTCATCGGAAGATTTTTTTTACATGTT
GGTTTGAAAGAGGAAGAATTAAGATATTAAAAAGGGATTtagtttctttt
gattttttttgtattttaggaATTCAAAACGGTTTCTACTCTCATACACA
TAGACACTAGACATCTTTCTAAATGAAAATGGCGACAGAATTTTTCAGGT
TTAAAGATGGAAGCTTTCTCCATaatggattttattttgttaaaaaatct
ggactaattggaaaaaattttactCGTGAGATTTGTGTGGGCTACCAAGT
CAACTGATAAAGATGTTAGACGTCTCTAGTATTTTTTCTGATTCACAAGG
TCTGACCAATATACCAACCCTTATTCCACAAAATGGTTGGGTTCGAATAA
CGTCAAATGTCAATTATCTGGCAACTTGTTAATGCTTTGATATAATTGGG
AATTGAAAGACCATCATTGAACATTTTAGAGAGATCATAATGTGTTTTAC
ACGTTTTAAGTATCTTTCTCTCAGTTTGATTTTATAATGGTTCTACATGG
TAGTCTTTTTGGACTCAATTATCATGATCTCGATCCATGATACTCTAAAA
AAAAGTTCTAGTCTTGGCAAATTAGCTTTTAGTTCTGAATGAAAAAGAAG
ctcaaaaaaagaattctacAGATACCCAAGCTACCAGCTGACCAGAAGAA
TGGaatttcttttaagatttttaaaaagattataatttCTCTTTCAACTt
gggttttatttttttcccatAGTTAAAGATAAAGAAGTTCTTTTAACCAC
GCGAGGTATAAATAAAGTAAAGTACTATTGTATTGTAATAATAgaataga
aaaacaaaagaaaagtttggATTGAAAGAGGTTAGATGGAAATTTGTTGT
AAGCACTTTAGTTACTATCCTCTTAACGTATCTAAGAAATAGTTTGCACC
TAGCCTGgtttgtttttcatttgagaGTCTAGTTTATTTTCTCTAATATA
TTTTGGAGATTCTATTCTGTGTAgctattgacaacaaatgaaaGTATTCA
GGTTGCTTAAGTCAAAATAATACCAGTAATGTTACCTTAATTTGGACGAT
TGAAAGTTgtgttagtttttttctgaagctcaagtttttcttataaaaaa
ttaggttaaaatcttcaaaatattcttcaaaaagatttttctaaaagacG
GATTCAGAAATACATAGGACTTGTCTACTTTTCATTCACAAGTACCATAA
TACAAATGCTTTTGTCTTTTGCTTCACTCGTATTCAATGAAAAGTACACg
aaataaagaatttctgaaggaaattttaaaatcttaaatttttgtgGAAG
ATTATACAGAGATTCTCTCGTATTCGTTTTCCTTTTGGGGCTTTCATTCT
GAATGCTCATCTATAGGTCTAACTTGAGATACAGTCGACGCTTTCTAACT
CTATTTTCGAGGGGAATTattgaattttcatcgaataggggagcgtatcg
aatatagagcgtcgtttatgagagatTCTTGTTGACATTGACTTTCAATA
TTAGCGAAAAATGAAACGTATAATATAGTAGAGCGTAAAATAAGAAAGAT
TCAACCGTATTGTGGATGTTAATTCTGGAAAACTGTACTGTAATGGCTGC
TTACATGTTCATGAATTTGTGTTGTACAAAATAATTGAAAGGAGTTCCTA
AAGTTTTTTACCTATTCATTTTTTAAGGTTTAAACACAGTAACACGATTC
AAGATTGAAGAACATTGGATGTCAAGAGACTTTGATCAGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000403-exon-sc0000002-1491911889:127258..127371 | TCONS_00000403-exon-sc0000002-1491911889:127258..127371 | Clytia hemisphaerica | exon |
| TCONS_00000403-exon-sc0000002-1510915933:127258..127371 | TCONS_00000403-exon-sc0000002-1510915933:127258..127371 | Clytia hemisphaerica | exon |
| TCONS_00000403-exon-sc0000002-1575043694:127258..127371 | TCONS_00000403-exon-sc0000002-1575043694:127258..127371 | Clytia hemisphaerica | exon |
| TCONS_00000403-exon-sc0000002-1491911889:130585..130649 | TCONS_00000403-exon-sc0000002-1491911889:130585..130649 | Clytia hemisphaerica | exon |
| TCONS_00000403-exon-sc0000002-1510915933:130585..130649 | TCONS_00000403-exon-sc0000002-1510915933:130585..130649 | Clytia hemisphaerica | exon |
| TCONS_00000403-exon-sc0000002-1575043694:130585..130649 | TCONS_00000403-exon-sc0000002-1575043694:130585..130649 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:127258..130649 + |
Blast
The following BLAST results are available for this feature:
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