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TCONS_00000403 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000403
Unique NameTCONS_00000403
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length179

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000403 ID=TCONS_00000403|Name=TCONS_00000403|organism=Clytia hemisphaerica|type=transcript|length=179bp
AGTCACCTTACCACATGCTGACAACAGGCGCCAAAGCCGAGATGTTTATT
CTCTACATCAGTAAGGAATCGTTAAACATTCATGTGACATCACCAGGGGA
TATAATCGAAAAATGTTTAAACACAGTAACACGATTCAAGATTGAAGAAC
ATTGGATGTCAAGAGACTTTGATCAGACA
Run BLAST on NCBI

transcript from alignment at sc0000002:127258..130649+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000403 ID=TCONS_00000403|Name=TCONS_00000403|organism=Clytia hemisphaerica|type=transcript|length=3392bp|location=Sequence derived from alignment at sc0000002:127258..130649+ (Clytia hemisphaerica)
AGTCACCTTACCACATGCTGACAACAGGCGCCAAAGCCGAGATGTTTATT CTCTACATCAGTAAGGAATCGTTAAACATTCATGTGACATCACCAGGGGA TATAATCGAAAAATGTGAgattgtttttcaaatttatttcttattttctt ttaaatattttaaatctcTCTCACACCAGTAATAAGTTAGACTTTATAAA TCATTTTCTGGATATTATTCGTCGGATATTAGTATATAGGAATAGGTCAG TTGGAACTGCTCACAAGTTTCTGTCTCTAATGCGTTGATAATTTTAGTCT AGCTGGTCTAGCGAAATTAGTTAAGCGAAAATTATCGTACCGTATTTTTA CAAAAGTCCGCTCAAAAATCAAATTNTCGTTGATAATTTTAGTCTAGCGA AATTAGTAACGGCGAAAATTATCGTACCGTATTTTTACAAAAGTCCgctc aaaaatcaaattacTTTCTGAAGTACTGATTGGTTTATTTGGCTCAATTA CATCATAATTTTGAGACTTTGGGATTGATTTGATTGTCGAGCGGACATTT GTATTGTAGAGCCGTATAAACGGTACATAGGCCATTTCatagtcgaaatg gatcatgggtaatcaggactgattgcgcccgATAACGGTTCCCCGTTAGG TTAGACGcaataaaaatcttcaaaaattttcaaaacattggaCCAATAGG AAGTCGttattacccattacgctttgcgactgtggaATGACCTATAAAGA TTTATGGTTGGTTTTGTGGTTCGATACCGCTAAATTTTGAATCCAAGCCT AGCCCCCAATAGCTGCTAGTCGTAGTAAGTAAAAGTCTCGATTTACGTAG TGTAGAATTATTTCTAAAAACATGATTTTTAGCTGTGATAGGTCAAACTC ACTTGTCAAACAATTTGATAGCTGTCAGCCTAGCTTCAGCCCAGTTTAGT TTCAGGGTGGTATCGCATTAGATTTATTTTCCATGGTAGGATTTTTGTTG GCAGTTGCTTGTGTTTTATAAGCTTGATTTTACAGTGGAGCCTCTATAAT AACTGAAACACGCCCGGGGAACCaaatctttttcgaaaattttcgagtta tggacACCGAGTTATATTTGTAAGGCACTTTAAACTGAAGGGACAAAAAa ctgttcgaattaaggagataCTTGGGTAAGAGGTTTATTATTTTTGCACT TAGATACAGAAATCAGTCCAGTTAAGATTTTTAACGCTATTCCCCATCCT AATTTAATAGCCTTGGATAATTTCGTAGAGTTGTTTTCTTTCAACTGAAG TgaattttttaagtaaaaatttagaaaaacatttccAAAGCAAGCTAACT AAACAGACAGTTCGCATTTTCTGTTCTTGTcgaaatttatttgttttttg tgCAAGCTTNACTAAACAGACAGTTTGCATTTTCTGTTCTTGTcgaaatt tatttgttttttgtgCAAGCTTGAACATAACAGCAACACCTTTTGATTCT TACTTGTCGTACTTAACTCTCTTACGATCTCACTCAAGCATGATTAGCCT CCGGACCCAGGGATTAGCCTATTTTATAGTTGAGTTCTCACTTCCTGATT TAACTCTCACTCCCAAATATCTTTTCATCGGAAGATTTTTTTTACATGTT GGTTTGAAAGAGGAAGAATTAAGATATTAAAAAGGGATTtagtttctttt gattttttttgtattttaggaATTCAAAACGGTTTCTACTCTCATACACA TAGACACTAGACATCTTTCTAAATGAAAATGGCGACAGAATTTTTCAGGT TTAAAGATGGAAGCTTTCTCCATaatggattttattttgttaaaaaatct ggactaattggaaaaaattttactCGTGAGATTTGTGTGGGCTACCAAGT CAACTGATAAAGATGTTAGACGTCTCTAGTATTTTTTCTGATTCACAAGG TCTGACCAATATACCAACCCTTATTCCACAAAATGGTTGGGTTCGAATAA CGTCAAATGTCAATTATCTGGCAACTTGTTAATGCTTTGATATAATTGGG AATTGAAAGACCATCATTGAACATTTTAGAGAGATCATAATGTGTTTTAC ACGTTTTAAGTATCTTTCTCTCAGTTTGATTTTATAATGGTTCTACATGG TAGTCTTTTTGGACTCAATTATCATGATCTCGATCCATGATACTCTAAAA AAAAGTTCTAGTCTTGGCAAATTAGCTTTTAGTTCTGAATGAAAAAGAAG ctcaaaaaaagaattctacAGATACCCAAGCTACCAGCTGACCAGAAGAA TGGaatttcttttaagatttttaaaaagattataatttCTCTTTCAACTt gggttttatttttttcccatAGTTAAAGATAAAGAAGTTCTTTTAACCAC GCGAGGTATAAATAAAGTAAAGTACTATTGTATTGTAATAATAgaataga aaaacaaaagaaaagtttggATTGAAAGAGGTTAGATGGAAATTTGTTGT AAGCACTTTAGTTACTATCCTCTTAACGTATCTAAGAAATAGTTTGCACC TAGCCTGgtttgtttttcatttgagaGTCTAGTTTATTTTCTCTAATATA TTTTGGAGATTCTATTCTGTGTAgctattgacaacaaatgaaaGTATTCA GGTTGCTTAAGTCAAAATAATACCAGTAATGTTACCTTAATTTGGACGAT TGAAAGTTgtgttagtttttttctgaagctcaagtttttcttataaaaaa ttaggttaaaatcttcaaaatattcttcaaaaagatttttctaaaagacG GATTCAGAAATACATAGGACTTGTCTACTTTTCATTCACAAGTACCATAA TACAAATGCTTTTGTCTTTTGCTTCACTCGTATTCAATGAAAAGTACACg aaataaagaatttctgaaggaaattttaaaatcttaaatttttgtgGAAG ATTATACAGAGATTCTCTCGTATTCGTTTTCCTTTTGGGGCTTTCATTCT GAATGCTCATCTATAGGTCTAACTTGAGATACAGTCGACGCTTTCTAACT CTATTTTCGAGGGGAATTattgaattttcatcgaataggggagcgtatcg aatatagagcgtcgtttatgagagatTCTTGTTGACATTGACTTTCAATA TTAGCGAAAAATGAAACGTATAATATAGTAGAGCGTAAAATAAGAAAGAT TCAACCGTATTGTGGATGTTAATTCTGGAAAACTGTACTGTAATGGCTGC TTACATGTTCATGAATTTGTGTTGTACAAAATAATTGAAAGGAGTTCCTA AAGTTTTTTACCTATTCATTTTTTAAGGTTTAAACACAGTAACACGATTC AAGATTGAAGAACATTGGATGTCAAGAGACTTTGATCAGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000271XLOC_000271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000403-exon-sc0000002-1491911889:127258..127371TCONS_00000403-exon-sc0000002-1491911889:127258..127371Clytia hemisphaericaexon
TCONS_00000403-exon-sc0000002-1510915933:127258..127371TCONS_00000403-exon-sc0000002-1510915933:127258..127371Clytia hemisphaericaexon
TCONS_00000403-exon-sc0000002-1575043694:127258..127371TCONS_00000403-exon-sc0000002-1575043694:127258..127371Clytia hemisphaericaexon
TCONS_00000403-exon-sc0000002-1491911889:130585..130649TCONS_00000403-exon-sc0000002-1491911889:130585..130649Clytia hemisphaericaexon
TCONS_00000403-exon-sc0000002-1510915933:130585..130649TCONS_00000403-exon-sc0000002-1510915933:130585..130649Clytia hemisphaericaexon
TCONS_00000403-exon-sc0000002-1575043694:130585..130649TCONS_00000403-exon-sc0000002-1575043694:130585..130649Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:127258..130649 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 1.46025 0 0 0 3.29652 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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