TCONS_00000394 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000394
Unique NameTCONS_00000394
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000394 ID=TCONS_00000394|Name=TCONS_00000394|organism=Clytia hemisphaerica|type=transcript|length=1438bp
GAAAAACATCTGGGGGTGTTGTAGAGAGTTGAGAGTGAAAAAAGATCTCA
CACGAGCGCGAACGCAGGATGACGTGGCCCTATAATCCAGTACCATCCTA
TCATGTACCACACCATGGACCATATAACTTCCCTGGACATTACCCCCTGA
ATTATTACGgATATCCAAGAAAGCAAAGACGTGAGCGTACAACATTTACC
AAAGGACAATTAGAAATATTGGAGAATTTATTCCGTGAGACGAAGTACCC
TGATGTTTTTATGCGCGAAGACGTAGCAAGAAGAATCAGCCTACCTGAAT
CTAGAGTCCAGGTTTGGTTTAAAAACAGGCGTGCAAAACACCGACAGAAA
TCCAAGAAATCATCATCTACATCACAAAGTACGAACTCAGATTCCAGTCC
TGAACGAGGAGACCGTTCGCCTGCCCTCCAATCTCCTAACTCTGATAAAT
CACACAACATTGACCCACCACCACTTTCGTCACCGGCAAAACCGAACCAT
AGCAACAGCAACCATAGCAACAGCAACCATAGCAGCAGtaataacaacaa
taataatgGCAGTAATGGAAACACAACATCAGAATCAACAAACGAGTTTA
ATAACAACAAATCCCAATGCACATTCAATAACAACCATTTACCTCAAAAT
CCATTAACACCAACCACGCCTACAAACACGGGCGGATATCCGCCACTCGA
AAGAGCACCCTCGTATCCTAACTACATCCCTCAATCTTTCCAGCAATCGC
AAAGAGGATATGGTGGACAATCAGATTCGTCATACTGTCCATATTCACCG
ACCAGCGGTCGTCAATCTTTCTACCAATCCTCACATCTGCACCCACATTC
AACTAGCGATTACCAGCCATGTGCAGTAGATGTTCATGGCTCTACACCTT
TAAGTCCTGGTTGGAATACATATGGTCCGAACATATGAGACTAGTTTAAA
TAACTACATTTAAGTGATTCACCAAAGAATAGtgatgtcagatctaacaa
gtTTCCCACAATCTAACAAGATCGAAGTGACACAAACTAAACCCTAATTG
AAAATAAGACAGAGACATGTCTCTTTAAGAAATGGTTAGTGGTTTCCGCA
TATTCAATTGTTGATAAAACAGTAGAAGAAGTAATTGGTAGCGAACCAAC
GACAGGATAACTCTTAATTCCGAAATTCTGTATGCGCGGCAAGGGAAAAA
GGAAACTTAATTTATTCAGGTCATATTGGCTTTTAATTTAGTTTGAAACA
AGATTTCTCATCTCGCCTATCAgttttctgttttcaaatttgaaatgtaa
TAAATTGTAAAGAGCTGAAACTGCAGAAAATTTAGAACGatacaatttct
ttttttaaagatatttttttgaacttttagaaatttttcgtttttccaaT
AATTCTAAGACAAACGAATATATTATTGTGTATAGCTg
Run BLAST on NCBI

transcript from alignment at sc0000002:19854..24246+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000394 ID=TCONS_00000394|Name=TCONS_00000394|organism=Clytia hemisphaerica|type=transcript|length=4393bp|location=Sequence derived from alignment at sc0000002:19854..24246+ (Clytia hemisphaerica)
GAAAAACATCTGGGGGTGTTGTAGAGAGTTGAGAGTGAAAAAAGGTGCGT AACAagattttcgaagatttttttgaTTAATCCAAGATAGTAACGACTTA AACCGAtcagcgaaaaaaaaaaacgtttcacttcattataattttttaag gttttgaaatAATTCATCGGACTAATATTATTGATGATCATTATAAGCTT GGTATTTCTTTAAGtattttgttattcaaattcactacattttttttata ttgtacaaacttcTTTTGGTTGGTAAAGGGAAAGGTCATCATTTTCGAGC TTTGTTGAAACTCAGCAAAAAGGTTTTTGAGCCATcttataaaagttttt gaacCGTAATAACATCGGCGCGATACTTTGGTGGAACTTATAAGTGAAAT CGCTCACATTTTAGTGTGCTCGGAACTTACAATGTTAACTAGCTATGTAA GTATACAATGAAGTCTTGAATTGAAAAAAGGCTTGCCAAAGACAGGGGCC AcggctccactttgaaagtATTAGGGCCACATAATATACTGACTAAGGAG ACGCCACTGGATGGGGCCGACGGGTGAAAAGCAATTTTTAGCTCTTTTAG ATTACCTAAAACAGACCTGTTTTAGGCGATCTGAAGGTTTAAGGTTATTA AACAGAATTTGACTTGAttggtaaattttctttttgttttgaaaaaatgt gccTCCCCCCCGCTGGCGCAGCGCCTGTAAAGACTACTATTGGTTAATGT CAGAGGATGCTATCGTCTGTTAGAGGGACAGTTAACGCTGGGAAAACTTA TAAGCGCGTAGTTTACTGTCGTAATGAGGGGTTACGGAAAGAATAGTGGC GGAAAAGTTAGGAACAAACACTGCTAGCACAGTAAAAACCGTCATCAATG TTCACCTTGTACCGGGCTTATCTTCGGCACTCAAATTAATCCCACTTTCT AAATTATTTCCGTTTTAGTGATCTTGTCTAAGTTGATCTTTGCTTTAGAA TTTTAGACAGTAAAGTACAGTAAGAACGGGAGTACAATACAAACacaata ttcaatttcaaaatattatagtaaaagattttttcaagtgACTCTTCGAT ACTGAATAAATTCAACTTACGCGACATTGAGAACGTTGGGTTACAAAAAG ATTAGGTTAATGGGTCAAGGAGAAACACTCTTCCTCCAAAGCGAAGGTTT GAAAACAGACTTATCTTTTCCCAAGCTAATTAATTTACCTTTCAACATTG CAACATGCATAGTGcggttttttttgtcaaataagGCCACATATCAACCT TAACTATCGAGACTTTATGAGAAAACTTTActtaaaataagagaaaaact GACCCTCAAAATTAGGATTTTACTAATATCAAAATAGTATTAGTTCGATA AGGGGAGCTTCAGGAAGCAGCAAGGTGGCGATACATGTAGAGTTCGTTAC TTTGCCAAAAAGAAATTACGAAACCCTGCTAATGTTAATTACTAGTTTGT TAGCGTTTTTTGCAAGATGATATGTGATATCTTCAATTCAATTTTCGGAT GATCATGACAGAAGGCTGATAATCTGGTTAAAGCGTTACCTACTCACCAT TAGCTCTGGATCATATACCACACATTAACTAAATCGAGATCTCAAATACT TTATTAATATTGACATTGTgtttaacttatttttaacaTCTTTATTTCAG ATCTCACACGAGCGCGAACGCAGGATGACGTGGCCCTATAATCCAGTACC ATCCTATCATGTACCACACCATGGACCATATAACTTCCCTGGACATTACC CCCTGAATTATTACGGTAAgacttttcaaactcgagatgtATAAAAGTCA AAACCTCAAAACGGCGCTAATTTTTCGCTGCCAGACCCTGCTGAAAATAT CTGAATTTTCACTTTTgaagaaaaaggtcaaattctGTTTTTCGAGTAAT TCTGGTAAACGAAGAATACCTTAAAAAGACTAGTAATATTTCCGTTGGTT GAAATTGTCACAAATACCAAATACAGAACTAAGCGTTACGTACTTTCATT GGTACAACAAAACGGAGGAAAGTTAAACTCggtaatattgaaaataaaac gaAAAGTAACTAACTTACAGTCTCATGGTACAGTTTCCATTCTACTTCAC TCGACTGTCTTTTCCTAAaggaatacatgtttttttttataagcatacaa aaatccgaaaacaggctcaaagatgcttaggtcgaaagcttaataatgct gaaaaatgcttgaggggatgcttaaatctaaagcataaatttaaggaaat acaaaaaatccgtaaaattccagccaaaaaaagccaaaatcaggaaaaac atttttcgtaggctcaagttatgcttgccatatgcttaatttttccccat atctgagcctagatatgcttataagtacaatgcttataaaaaaaataatt tAGATTTCTAGGtaataatatttaaaatattttgttaaatttcaggATAT CCAAGAAAGCAAAGACGTGAGCGTACAACATTTACCAAAGGACAATTAGA AATATTGGAGAATTTATTCCGTGAGACGAAGTACCCTGATGTTTTTATGC GCGAAGACGTAGCAAGAAGAATCAGCCTACCTGAATCTAGAGTCCAGGTT AGTTATTATGAAATCTCAACATCTTCTGATATTATGATAATCTTCATCGC ACAACCTATAACACAAGtataataaagaaatattaaggAGCAATATGTGA GTGGTCTAAAGCAATTAGCTCATAGATAGCCGAAATCGCTGGCCCTGTTA AAATAATGGAAACGCGGTCTATGGGTTGTAGACTACTGGGGTATCTATGT AAAATAAAGACTTTATGcagaaagtttttgtttgtttttgtttttgtaat gaaaaattaactctggcTGGCCGGCGAATTCATAGCAAACGCAGTGTATT TATTAGcgtaaatatgtacttgaggcgAACCGAACTTTTCGAACGGCTAA TTGTAATTATTTTCGTACCTTGGACCGTCGAAATTCGCCGTTTGCCGGGC CTAAATAAGACCCTTAAGCTTTATGTATCTAATACATTGCAAGTTTTGGC TGATTCGAACACGATCGGGAACTtctttgttcgaattataggagATGAAA GCATTTAATAAGAGGCTCCACTTGACGAAATTTAGTCCAAATTATAAAGA GATTAAAATAATAGAAATCGATAATCTCCGAttatttaacattttcaaac ttttttcatattccaGGTTTGGTTTAAAAACAGGCGTGCAAAACACCGAC AGAAATCCAAGAAATCATCATCTACATCACAAAGTACGAACTCAGATTCC AGTCCTGAACGAGGAGACCGTTCGCCTGCCCTCCAATCTCCTAACTCTGA TAAATCACACAACATTGACCCACCACCACTTTCGTCACCGGCAAAACCGA ACCATAGCAACAGCAACCATAGCAACAGCAACCATAGCAGCAGtaataac aacaataataatgGCAGTAATGGAAACACAACATCAGAATCAACAAACGA GTTTAATAACAACAAATCCCAATGCACATTCAATAACAACCATTTACCTC AAAATCCATTAACACCAACCACGCCTACAAACACGGGCGGATATCCGCCA CTCGAAAGAGCACCCTCGTATCCTAACTACATCCCTCAATCTTTCCAGCA ATCGCAAAGAGGATATGGTGGACAATCAGATTCGTCATACTGTCCATATT CACCGACCAGCGGTCGTCAATCTTTCTACCAATCCTCACATCTGCACCCA CATTCAACTAGCGATTACCAGCCATGTGCAGTAGATGTTCATGGCTCTAC ACCTTTAAGTCCTGGTTGGAATACATATGGTCCGAACATATGAGACTAGT TTAAATAACTACATTTAAGTGATTCACCAAAGAATAGtgatgtcagatct aacaagtTTCCCACAATCTAACAAGATCGAAGTGACACAAACTAAACCCT AATTGAAAATAAGACAGAGACATGTCTCTTTAAGAAATGGTTAGTGGTTT CCGCATATTCAATTGTTGATAAAACAGTAGAAGAAGTAATTGGTAGCGAA CCAACGACAGGATAACTCTTAATTCCGAAATTCTGTATGCGCGGCAAGGG AAAAAGGAAACTTAATTTATTCAGGTCATATTGGCTTTTAATTTAGTTTG AAACAAGATTTCTCATCTCGCCTATCAgttttctgttttcaaatttgaaa tgtaaTAAATTGTAAAGAGCTGAAACTGCAGAAAATTTAGAACGatacaa tttctttttttaaagatatttttttgaacttttagaaatttttcgttttt ccaaTAATTCTAAGACAAACGAATATATTATTGTGTATAGCTg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000267XLOC_000267Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000394-exon-sc0000002-1491911889:19854..19897TCONS_00000394-exon-sc0000002-1491911889:19854..19897Clytia hemisphaericaexon
TCONS_00000394-exon-sc0000002-1510915933:19854..19897TCONS_00000394-exon-sc0000002-1510915933:19854..19897Clytia hemisphaericaexon
TCONS_00000394-exon-sc0000002-1575043694:19854..19897TCONS_00000394-exon-sc0000002-1575043694:19854..19897Clytia hemisphaericaexon
TCONS_00000394-exon-sc0000002-1491911889:21554..21668TCONS_00000394-exon-sc0000002-1491911889:21554..21668Clytia hemisphaericaexon
TCONS_00000394-exon-sc0000002-1510915933:21554..21668TCONS_00000394-exon-sc0000002-1510915933:21554..21668Clytia hemisphaericaexon
TCONS_00000394-exon-sc0000002-1575043694:21554..21668TCONS_00000394-exon-sc0000002-1575043694:21554..21668Clytia hemisphaericaexon
TCONS_00000394-exon-sc0000002-1491911889:22349..22500TCONS_00000394-exon-sc0000002-1491911889:22349..22500Clytia hemisphaericaexon
TCONS_00000394-exon-sc0000002-1510915933:22349..22500TCONS_00000394-exon-sc0000002-1510915933:22349..22500Clytia hemisphaericaexon
TCONS_00000394-exon-sc0000002-1575043694:22349..22500TCONS_00000394-exon-sc0000002-1575043694:22349..22500Clytia hemisphaericaexon
TCONS_00000394-exon-sc0000002-1491911889:23120..24246TCONS_00000394-exon-sc0000002-1491911889:23120..24246Clytia hemisphaericaexon
TCONS_00000394-exon-sc0000002-1510915933:23120..24246TCONS_00000394-exon-sc0000002-1510915933:23120..24246Clytia hemisphaericaexon
TCONS_00000394-exon-sc0000002-1575043694:23120..24246TCONS_00000394-exon-sc0000002-1575043694:23120..24246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:19854..24246 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.122549 0 0.038929 0 0 0.470661 0 0 0 0.0576761 7.16528 6.21736 0 0 2.65808 4.91178 9.22659 8.13647 2.34569 1.36658 0.0597156 1.3037 0 0 0 0 0 0.032644
Blast
BLAST of TCONS_00000394 vs. Swiss-Prot (Human)
Match: OTX2 (Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.229e-26
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 3
Query:  138 HYPLNYYGYPRKQRRERTTFTKGQLEILENLFRETKYPDVFMREDVARRISLPESRVQVWFKNRRAKHR 344
            H  + Y   PRKQRRERTTFT+ QL++LE LF +T+YPD+FMRE+VA +I+LPESRVQVWFKNRRAK R
Sbjct:   26 HPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 94          
The following BLAST results are available for this feature:
BLAST of TCONS_00000394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTX22.229e-2669.57Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1... [more]
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