TCONS_00000384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000384
Unique NameTCONS_00000384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000384 ID=TCONS_00000384|Name=TCONS_00000384|organism=Clytia hemisphaerica|type=transcript|length=751bp
ttttttaaaaagaccttaaatttacattttctgtctaaaaaataaaaatt
acgaATGGTCCCCTCTTTACAGAGAAGTTTAACCTGTCTAGGTAGAAAGA
GCTATAAAATGTTCTGTATATGCGCTGATGTTTTGCTCCGTCTGTACGTT
GCTTTGCGAAAATAAGCACCATTAGTAAATTGCGAGGATCAATCCCAAAC
AGTCCTAATTAGGTTCAGTCAATTACATTGAATCTATAGAATAAACACTG
TATGATGTCCAAGTCCAAGCCCATAgcaattcaaaatcaaaaccaaaact
CGCTTTCTTGCTTTCTTCCCCATCATGTTCTTTGATTCCAATTTTACCTC
TCTGAAACGAGCGCTCCATCATAGAGTAGACATCAAAATGTAACGAAATC
ATTGGACAACACAGTCATTCAAAACATACCAAAGCCAAGCACGAGCAAGC
ACGAGCAAGCAACAACAAGCCCCGTTTGGACTTTCGCAATATAATCCTTC
CCATGTCCTTATCAGTGATGTTGTTGGTTTGTTATGCGCTTTCCATAAAC
TGTCTCTTTTGTTAGTGTATCCtatattttgaaatcaaaatacagTATTT
CAAGGTAAATCTTTTCAAAGTCTTGTTGTTTCCATAACTTCTCCAgttga
aaaagtgtaaaaattcATCAAGCAAACTACCAAGcaaatcaagcaaaaaa
aacaactccGGGAAGGAAGGCAGACAAAATACGATGGCTCTGAGGTTTCC
C
Run BLAST on NCBI

transcript from alignment at sc0000001:2753881..2754631

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000384 ID=TCONS_00000384|Name=TCONS_00000384|organism=Clytia hemisphaerica|type=transcript|length=751bp|location=Sequence derived from alignment at sc0000001:2753881..2754631 (Clytia hemisphaerica)
GGGAAACCTCAGAGCCATCGTATTTTGTCTGCCTTCCTTCCCggagttgt tttttttgcttgatttgCTTGGTAGTTTGCTTGATgaatttttacacttt ttcaacTGGAGAAGTTATGGAAACAACAAGACTTTGAAAAGATTTACCTT GAAATActgtattttgatttcaaaatataGGATACACTAACAAAAGAGAC AGTTTATGGAAAGCGCATAACAAACCAACAACATCACTGATAAGGACATG GGAAGGATTATATTGCGAAAGTCCAAACGGGGCTTGTTGTTGCTTGCTCG TGCTTGCTCGTGCTTGGCTTTGGTATGTTTTGAATGACTGTGTTGTCCAA TGATTTCGTTACATTTTGATGTCTACTCTATGATGGAGCGCTCGTTTCAG AGAGGTAAAATTGGAATCAAAGAACATGATGGGGAAGAAAGCAAGAAAGC GagttttggttttgattttgaattgcTATGGGCTTGGACTTGGACATCAT ACAGTGTTTATTCTATAGATTCAATGTAATTGACTGAACCTAATTAGGAC TGTTTGGGATTGATCCTCGCAATTTACTAATGGTGCTTATTTTCGCAAAG CAACGTACAGACGGAGCAAAACATCAGCGCATATACAGAACATTTTATAG CTCTTTCTACCTAGACAGGTTAAACTTCTCTGTAAAGAGGGGACCATtcg taatttttattttttagacagaaaatgtaaatttaaggtctttttaaaaa a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000258XLOC_000258Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000384-exon-sc0000001-1491911889:2753881..2754631TCONS_00000384-exon-sc0000001-1491911889:2753881..2754631Clytia hemisphaericaexon
TCONS_00000384-exon-sc0000001-1510915933:2753881..2754631TCONS_00000384-exon-sc0000001-1510915933:2753881..2754631Clytia hemisphaericaexon
TCONS_00000384-exon-sc0000001-1575043694:2753881..2754631TCONS_00000384-exon-sc0000001-1575043694:2753881..2754631Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2753881..2754631 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.261828 0 0.296455 0 0.35309 0.279017 2.10389 1.89085 0.441275 0.136648 0.596851 0.784693 1.00127 1.40151 0.631868 1.39607 0.540522 0.906575 0 0.0728129 0.759452 0.277825 0.225155 0.68233 0.983897 1.12899 0.269264 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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