TCONS_00000384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000384
Unique NameTCONS_00000384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000384 ID=TCONS_00000384|Name=TCONS_00000384|organism=Clytia hemisphaerica|type=transcript|length=751bp
ttttttaaaaagaccttaaatttacattttctgtctaaaaaataaaaatt
acgaATGGTCCCCTCTTTACAGAGAAGTTTAACCTGTCTAGGTAGAAAGA
GCTATAAAATGTTCTGTATATGCGCTGATGTTTTGCTCCGTCTGTACGTT
GCTTTGCGAAAATAAGCACCATTAGTAAATTGCGAGGATCAATCCCAAAC
AGTCCTAATTAGGTTCAGTCAATTACATTGAATCTATAGAATAAACACTG
TATGATGTCCAAGTCCAAGCCCATAgcaattcaaaatcaaaaccaaaact
CGCTTTCTTGCTTTCTTCCCCATCATGTTCTTTGATTCCAATTTTACCTC
TCTGAAACGAGCGCTCCATCATAGAGTAGACATCAAAATGTAACGAAATC
ATTGGACAACACAGTCATTCAAAACATACCAAAGCCAAGCACGAGCAAGC
ACGAGCAAGCAACAACAAGCCCCGTTTGGACTTTCGCAATATAATCCTTC
CCATGTCCTTATCAGTGATGTTGTTGGTTTGTTATGCGCTTTCCATAAAC
TGTCTCTTTTGTTAGTGTATCCtatattttgaaatcaaaatacagTATTT
CAAGGTAAATCTTTTCAAAGTCTTGTTGTTTCCATAACTTCTCCAgttga
aaaagtgtaaaaattcATCAAGCAAACTACCAAGcaaatcaagcaaaaaa
aacaactccGGGAAGGAAGGCAGACAAAATACGATGGCTCTGAGGTTTCC
C
Run BLAST on NCBI

transcript from alignment at sc0000001:2753881..2754631

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000384 ID=TCONS_00000384|Name=TCONS_00000384|organism=Clytia hemisphaerica|type=transcript|length=751bp|location=Sequence derived from alignment at sc0000001:2753881..2754631 (Clytia hemisphaerica)
GGGAAACCTCAGAGCCATCGTATTTTGTCTGCCTTCCTTCCCggagttgt
tttttttgcttgatttgCTTGGTAGTTTGCTTGATgaatttttacacttt
ttcaacTGGAGAAGTTATGGAAACAACAAGACTTTGAAAAGATTTACCTT
GAAATActgtattttgatttcaaaatataGGATACACTAACAAAAGAGAC
AGTTTATGGAAAGCGCATAACAAACCAACAACATCACTGATAAGGACATG
GGAAGGATTATATTGCGAAAGTCCAAACGGGGCTTGTTGTTGCTTGCTCG
TGCTTGCTCGTGCTTGGCTTTGGTATGTTTTGAATGACTGTGTTGTCCAA
TGATTTCGTTACATTTTGATGTCTACTCTATGATGGAGCGCTCGTTTCAG
AGAGGTAAAATTGGAATCAAAGAACATGATGGGGAAGAAAGCAAGAAAGC
GagttttggttttgattttgaattgcTATGGGCTTGGACTTGGACATCAT
ACAGTGTTTATTCTATAGATTCAATGTAATTGACTGAACCTAATTAGGAC
TGTTTGGGATTGATCCTCGCAATTTACTAATGGTGCTTATTTTCGCAAAG
CAACGTACAGACGGAGCAAAACATCAGCGCATATACAGAACATTTTATAG
CTCTTTCTACCTAGACAGGTTAAACTTCTCTGTAAAGAGGGGACCATtcg
taatttttattttttagacagaaaatgtaaatttaaggtctttttaaaaa
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000258XLOC_000258Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000384-exon-sc0000001-1491911889:2753881..2754631TCONS_00000384-exon-sc0000001-1491911889:2753881..2754631Clytia hemisphaericaexon
TCONS_00000384-exon-sc0000001-1510915933:2753881..2754631TCONS_00000384-exon-sc0000001-1510915933:2753881..2754631Clytia hemisphaericaexon
TCONS_00000384-exon-sc0000001-1575043694:2753881..2754631TCONS_00000384-exon-sc0000001-1575043694:2753881..2754631Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2753881..2754631 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.261828	0	0.296455	0	0.35309	0.279017	2.10389	1.89085	0.441275	0.136648	0.596851	0.784693	1.00127	1.40151	0.631868	1.39607	0.540522	0.906575	0	0.0728129	0.759452	0.277825	0.225155	0.68233	0.983897	1.12899	0.269264	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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