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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000377 ID=TCONS_00000377|Name=TCONS_00000377|organism=Clytia hemisphaerica|type=transcript|length=875bp
ATGAAGCAACGAAGaggatgaaaatgaagaagaagcagaCATTGGCGGCA
ACTTCAAAACGAGAAACCGAACAACAACAACTTTTTCTTGACCACCAGTC
TTTATGATCTTGATTTTCATTGGGTGAGCTAAACGATCGAAGCGTATTGT
AGAATATCGCATTTTGACGTTCTGATAGATGATAAGGGTAATTGGAGGTC
TGTCCTAAATCTACACTAACCTCTGAAACTGTCCTTGTCGGAGAGATATG
ATGTAAACCTTCTAGTTGTTTAGCAAGATTCAATTGCAAGTATCCACTTG
ACAGCAATTCGTCTAAATCATGGGGACTGTAATCCAATGATATATATTCT
GGTGTATTTTGAAGTGATCTTGTAACTTCTTGAAAAACGCcttctttttg
aaagaaattttgaattgcCAAAGTTATGCCATTAGAAGAAggattttctt
tgaatttttcaataTCTTTACAGAAATCGTCATCTTTAAAAATCAATCTC
TTAATTATTGACACGAACTTATCGGTAGCTTTATTGAAGTTGTGTAAAAT
GGTGTGAGCAGCATAAACTCGACCAGAACGCTGAGGCGGCGATAGAGTGC
TCATTTCTTCGATCAAGTAATTTAGTTGATAAatccctgtctcaatataa
tttgcaacGAGAGCAAGAACGACGTACAATAGTTGACGTAGACTGctttg
tttcaacgttcatctaacgttatatggacgttgtgaatattagaaaaacg
ttgaaacgacgttgtgtgccagctgggtagtaACAGATTCGTACTCCTTA
TACAACCTGCGGTTTTGCAgaggtctgcgaatcagactatAGTCGACGTG
TACCAAAGAAACACTCTCAAATTCC Run BLAST on NCBI protein sequence of TCONS_00000377-protein >TCONS_00000377-protein ID=TCONS_00000377-protein|Name=TCONS_00000377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MSTLSPPQRSGRVYAAHTILHNFNKATDKFVSIIKRLIFKDDDFCKDIEK
FKENPSSNGITLAIQNFFQKEGVFQEVTRSLQNTPEYISLDYSPHDLDEL
LSSGYLQLNLAKQLEGLHHISPTRTVSEVSVDLGQTSNYPYHLSERQNAI
FYNTLRSFSSPNENQDHKDWWSRKSCCCSVSRFEVAANVCFFFIFILFVA
S Run BLAST on NCBI transcript from alignment at sc0000001:2411831..2412705 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000377 ID=TCONS_00000377|Name=TCONS_00000377|organism=Clytia hemisphaerica|type=transcript|length=875bp|location=Sequence derived from alignment at sc0000001:2411831..2412705 (Clytia hemisphaerica)
GGAATTTGAGAGTGTTTCTTTGGTACACGTCGACTatagtctgattcgca
gacctcTGCAAAACCGCAGGTTGTATAAGGAGTACGAATCTGTtactacc
cagctggcacacaacgtcgtttcaacgtttttctaatattcacaacgtcc
atataacgttagatgaacgttgaaacaaagCAGTCTACGTCAACTATTGT
ACGTCGTTCTTGCTCTCgttgcaaattatattgagacagggatTTATCAA
CTAAATTACTTGATCGAAGAAATGAGCACTCTATCGCCGCCTCAGCGTTC
TGGTCGAGTTTATGCTGCTCACACCATTTTACACAACTTCAATAAAGCTA
CCGATAAGTTCGTGTCAATAATTAAGAGATTGATTTTTAAAGATGACGAT
TTCTGTAAAGAtattgaaaaattcaaagaaaatccTTCTTCTAATGGCAT
AACTTTGgcaattcaaaatttctttcaaaaagaagGCGTTTTTCAAGAAG
TTACAAGATCACTTCAAAATACACCAGAATATATATCATTGGATTACAGT
CCCCATGATTTAGACGAATTGCTGTCAAGTGGATACTTGCAATTGAATCT
TGCTAAACAACTAGAAGGTTTACATCATATCTCTCCGACAAGGACAGTTT
CAGAGGTTAGTGTAGATTTAGGACAGACCTCCAATTACCCTTATCATCTA
TCAGAACGTCAAAATGCGATATTCTACAATACGCTTCGATCGTTTAGCTC
ACCCAATGAAAATCAAGATCATAAAGACTGGTGGTCAAGAAAAAGTTGTT
GTTGTTCGGTTTCTCGTTTTGAAGTTGCCGCCAATGtctgcttcttcttc
attttcatcctCTTCGTTGCTTCAT Coding sequence (CDS) from alignment at sc0000001:2411831..2412705 >TCONS_00000377 ID=TCONS_00000377|Name=TCONS_00000377|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0000001:2411831..2412705 (Clytia hemisphaerica)
ATGAGCACTCTATCGCCGCCTCAGCGTTCTGGTCGAGTTTATGCTGCTCA
CACCATTTTACACAACTTCAATAAAGCTACCGATAAGTTCGTGTCAATAA
TTAAGAGATTGATTTTTAAAGATGACGATTTCTGTAAAGAtattgaaaaa
ttcaaagaaaatccTTCTTCTAATGGCATAACTTTGgcaattcaaaattt
ctttcaaaaagaagGCGTTTTTCAAGAAGTTACAAGATCACTTCAAAATA
CACCAGAATATATATCATTGGATTACAGTCCCCATGATTTAGACGAATTG
CTGTCAAGTGGATACTTGCAATTGAATCTTGCTAAACAACTAGAAGGTTT
ACATCATATCTCTCCGACAAGGACAGTTTCAGAGGTTAGTGTAGATTTAG
GACAGACCTCCAATTACCCTTATCATCTATCAGAACGTCAAAATGCGATA
TTCTACAATACGCTTCGATCGTTTAGCTCACCCAATGAAAATCAAGATCA
TAAAGACTGGTGGTCAAGAAAAAGTTGTTGTTGTTCGGTTTCTCGTTTTG
AAGTTGCCGCCAATGtctgcttcttcttcattttcatcctCTTCGTTGCT
TCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000377-exon-sc0000001-1491911889:2411831..2412705 | TCONS_00000377-exon-sc0000001-1491911889:2411831..2412705 | Clytia hemisphaerica | exon |
| TCONS_00000377-exon-sc0000001-1510915933:2411831..2412705 | TCONS_00000377-exon-sc0000001-1510915933:2411831..2412705 | Clytia hemisphaerica | exon |
| TCONS_00000377-exon-sc0000001-1575043694:2411831..2412705 | TCONS_00000377-exon-sc0000001-1575043694:2411831..2412705 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2411831..2412705 . |
Blast
The following BLAST results are available for this feature:
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