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TCONS_00000377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000377
Unique NameTCONS_00000377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length875

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000377 ID=TCONS_00000377|Name=TCONS_00000377|organism=Clytia hemisphaerica|type=transcript|length=875bp
ATGAAGCAACGAAGaggatgaaaatgaagaagaagcagaCATTGGCGGCA
ACTTCAAAACGAGAAACCGAACAACAACAACTTTTTCTTGACCACCAGTC
TTTATGATCTTGATTTTCATTGGGTGAGCTAAACGATCGAAGCGTATTGT
AGAATATCGCATTTTGACGTTCTGATAGATGATAAGGGTAATTGGAGGTC
TGTCCTAAATCTACACTAACCTCTGAAACTGTCCTTGTCGGAGAGATATG
ATGTAAACCTTCTAGTTGTTTAGCAAGATTCAATTGCAAGTATCCACTTG
ACAGCAATTCGTCTAAATCATGGGGACTGTAATCCAATGATATATATTCT
GGTGTATTTTGAAGTGATCTTGTAACTTCTTGAAAAACGCcttctttttg
aaagaaattttgaattgcCAAAGTTATGCCATTAGAAGAAggattttctt
tgaatttttcaataTCTTTACAGAAATCGTCATCTTTAAAAATCAATCTC
TTAATTATTGACACGAACTTATCGGTAGCTTTATTGAAGTTGTGTAAAAT
GGTGTGAGCAGCATAAACTCGACCAGAACGCTGAGGCGGCGATAGAGTGC
TCATTTCTTCGATCAAGTAATTTAGTTGATAAatccctgtctcaatataa
tttgcaacGAGAGCAAGAACGACGTACAATAGTTGACGTAGACTGctttg
tttcaacgttcatctaacgttatatggacgttgtgaatattagaaaaacg
ttgaaacgacgttgtgtgccagctgggtagtaACAGATTCGTACTCCTTA
TACAACCTGCGGTTTTGCAgaggtctgcgaatcagactatAGTCGACGTG
TACCAAAGAAACACTCTCAAATTCC
Run BLAST on NCBI

protein sequence of TCONS_00000377-protein

>TCONS_00000377-protein ID=TCONS_00000377-protein|Name=TCONS_00000377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MSTLSPPQRSGRVYAAHTILHNFNKATDKFVSIIKRLIFKDDDFCKDIEK
FKENPSSNGITLAIQNFFQKEGVFQEVTRSLQNTPEYISLDYSPHDLDEL
LSSGYLQLNLAKQLEGLHHISPTRTVSEVSVDLGQTSNYPYHLSERQNAI
FYNTLRSFSSPNENQDHKDWWSRKSCCCSVSRFEVAANVCFFFIFILFVA
S
Run BLAST on NCBI

transcript from alignment at sc0000001:2411831..2412705

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000377 ID=TCONS_00000377|Name=TCONS_00000377|organism=Clytia hemisphaerica|type=transcript|length=875bp|location=Sequence derived from alignment at sc0000001:2411831..2412705 (Clytia hemisphaerica)
GGAATTTGAGAGTGTTTCTTTGGTACACGTCGACTatagtctgattcgca gacctcTGCAAAACCGCAGGTTGTATAAGGAGTACGAATCTGTtactacc cagctggcacacaacgtcgtttcaacgtttttctaatattcacaacgtcc atataacgttagatgaacgttgaaacaaagCAGTCTACGTCAACTATTGT ACGTCGTTCTTGCTCTCgttgcaaattatattgagacagggatTTATCAA CTAAATTACTTGATCGAAGAAATGAGCACTCTATCGCCGCCTCAGCGTTC TGGTCGAGTTTATGCTGCTCACACCATTTTACACAACTTCAATAAAGCTA CCGATAAGTTCGTGTCAATAATTAAGAGATTGATTTTTAAAGATGACGAT TTCTGTAAAGAtattgaaaaattcaaagaaaatccTTCTTCTAATGGCAT AACTTTGgcaattcaaaatttctttcaaaaagaagGCGTTTTTCAAGAAG TTACAAGATCACTTCAAAATACACCAGAATATATATCATTGGATTACAGT CCCCATGATTTAGACGAATTGCTGTCAAGTGGATACTTGCAATTGAATCT TGCTAAACAACTAGAAGGTTTACATCATATCTCTCCGACAAGGACAGTTT CAGAGGTTAGTGTAGATTTAGGACAGACCTCCAATTACCCTTATCATCTA TCAGAACGTCAAAATGCGATATTCTACAATACGCTTCGATCGTTTAGCTC ACCCAATGAAAATCAAGATCATAAAGACTGGTGGTCAAGAAAAAGTTGTT GTTGTTCGGTTTCTCGTTTTGAAGTTGCCGCCAATGtctgcttcttcttc attttcatcctCTTCGTTGCTTCAT

Coding sequence (CDS) from alignment at sc0000001:2411831..2412705

>TCONS_00000377 ID=TCONS_00000377|Name=TCONS_00000377|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0000001:2411831..2412705 (Clytia hemisphaerica)
ATGAGCACTCTATCGCCGCCTCAGCGTTCTGGTCGAGTTTATGCTGCTCA
CACCATTTTACACAACTTCAATAAAGCTACCGATAAGTTCGTGTCAATAA
TTAAGAGATTGATTTTTAAAGATGACGATTTCTGTAAAGAtattgaaaaa
ttcaaagaaaatccTTCTTCTAATGGCATAACTTTGgcaattcaaaattt
ctttcaaaaagaagGCGTTTTTCAAGAAGTTACAAGATCACTTCAAAATA
CACCAGAATATATATCATTGGATTACAGTCCCCATGATTTAGACGAATTG
CTGTCAAGTGGATACTTGCAATTGAATCTTGCTAAACAACTAGAAGGTTT
ACATCATATCTCTCCGACAAGGACAGTTTCAGAGGTTAGTGTAGATTTAG
GACAGACCTCCAATTACCCTTATCATCTATCAGAACGTCAAAATGCGATA
TTCTACAATACGCTTCGATCGTTTAGCTCACCCAATGAAAATCAAGATCA
TAAAGACTGGTGGTCAAGAAAAAGTTGTTGTTGTTCGGTTTCTCGTTTTG
AAGTTGCCGCCAATGtctgcttcttcttcattttcatcctCTTCGTTGCT
TCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000251XLOC_000251Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000377-proteinTCONS_00000377-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000377-exon-sc0000001-1491911889:2411831..2412705TCONS_00000377-exon-sc0000001-1491911889:2411831..2412705Clytia hemisphaericaexon
TCONS_00000377-exon-sc0000001-1510915933:2411831..2412705TCONS_00000377-exon-sc0000001-1510915933:2411831..2412705Clytia hemisphaericaexon
TCONS_00000377-exon-sc0000001-1575043694:2411831..2412705TCONS_00000377-exon-sc0000001-1575043694:2411831..2412705Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2411831..2412705 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.535069 0.474877 0.499248 0.531078 2.72982 1.3096 0.966975 1.48086 0.359879 0.334692 0.0540305 0.285678 3.54408 2.81165 0.431885 0.964333 0.916543 0.779046 6.20364 8.94112 1.44688 1.51441 0.568951 0.888463 0.629129 0.613021 1.16371 0.898434 0.704822 0.772878
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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