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TCONS_00000374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000374
Unique NameTCONS_00000374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3020

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000374 ID=TCONS_00000374|Name=TCONS_00000374|organism=Clytia hemisphaerica|type=transcript|length=3020bp
GTTTGAAcattttgagtgtatttttcattagaaatattttatcaatctta
aaaatttcttttccatATACAacataaataatttttaaagataaGATTCT
GGCATTTCATCAAGGCTGTCGAAATCATAGTCTTTGTAGTTTTGTCTTTT
ATCCATCGAAGAAATCTCATCAGAAACCTCATAACCGATACATGAAGACC
TGCTGGAGTCTTCAAGATCCCTGTTATCTGAAGTTTGTGTTGAAATGTTT
TTAGAAGTTGACAGGTGCCTTGTCAAAGAATGCTTTTCCAGTTTTGCCAA
CAAATAGCAGAATTGCTCTTGGACATCTGAGGAGCCGTCAAGATACCAAG
AATCTCGGAGATTTTCTATTTCTTCCAGCATTTTATCTAATTCTTCATTG
TCACTATCATTTGCGCATGCGCGAGTTTCCTGTCCGGGATTGTGTCTGAA
ATCGTTTGCGCATGCTCTAGAATCATTAATGAGATTGTCACTACACGACT
GAGATTCTTCCATATTATCACAGTCAATTTCTGTATTTGAGCAACGTCTA
ATATTTTGTTTCGAATCTGAATTTTCCAAAGTTGACGATAACTTTGGATA
TTCAACAATTTCAGCTTTATTATCGGAGGTTTTTGATAAATCACCCAGTA
GATTTCTTTTCAAGtcaattaaattttcattaCTGGAGCTGAGATTAATG
TGAACATCTTCATAGCTACCGTCTTTGAGATCAAAACTTCGATTATTATA
CCACGTTGGTTGTTCAGTAGTGGTGCAATCATTATCAAGACTGTTAGTAC
TTTCAGCGAAAGATTGTTGCGAATAACAAGACGATCTTTTACAGTTCGTT
TCACTATCGATGTACGAGTTCCTGTGGAACCCTCCGAAGGTTTTACTATG
AGTTATGCCGCTGTTTCTCTTTAATGAATCATGACTAAGCAGACTGCTTC
GTTCAGAATGACTTGAGACTTCAGATTCTTCTGAANCTAAGCAGACTGCT
TCGCTCAGAATGACTTGAGACTTCAGATTCTTCtgaaatttgatcaaaac
aaGATTTCTGTCCATTATTATGTGTTTCAAAGCTCCCCGAATCAGTCATA
TTGAAAATACCTGTTTTTCTACGCCTCGAAGTTACTGCCTTAGTTGGCAG
TGTattgttattcaaaatttcagtAACACTCGATCTTGGAGATACTCTAC
TTGTTAGAAGATTCAGTTTATCTTTCAAGCTTGAACTGTTAACTCGCGTT
GGTGGAAGTACTGAGAAACTATCATCAAAGATGAACGCTTTTGGATTTTG
GATTTGTGCTGGTACTGAATGTTTACGTATTCTGGCTTTATCTTCATGAT
TTATACTGGTACTGGCTGCTAAGGCGGGTAACGTTAACTTACGTTGCCGA
TCCTGTACCAGAGCTTGGGAAATCTTACGATGTCGTCTCTCTTTCTTTTC
TTGATCACTCATATTCGAAATGGTTGATAATTTACGGAACGGATTTGACG
TGACTGAGAATTTGAACTTAACACGTTTTGTTGACATTGGAGGTGAGGAA
ACCGGCGTTTGATCTTTATCCGTCGCAACGCTCCATTCGTCCTCTTCTTC
TGCCTCTTCATAAATAGAATCAAGAGATCCGGCACTTATAACGTTGACCG
GGTTTCGAGTGATAATTCCTTCCCGGAATAAATCTGGATGTCCTGTCAGT
CCGGGTGAACATGGAGGAGCTAATGTTGTTGAAGTGTTGTTATTTTCCTC
TGAATGAGAGCACAAAAATAAACGTTTATAAGCTCTCAAGAAGTATTTGT
TTAATCCACCATAAATGAATGGGTTCATGATATAGTTCAAGTAATGGAAG
ATAACAAATGTTGAGGTAACACTTTCTGAGAATTTAGCTCCTTGTTTGAA
ACTATAAACAAGCCATATAATTTGATTAGGTAACGAGCTGATTGCAAAGA
TCACGATGATGAGAAGGAACATGAAAAATGTTCGGATCGTTTGCCGTCGG
CGACCGTTTGCGATGAAATAATCGGCATTATCGTATGACGAGGACGCCGA
AGACGAAGTCCGTTTATAATAGTTGCTAACACGGAACATCTTCAAGCAAA
ACATCAAACACATGTCCTTAGCTTCTCCCGAATAAGTTGTCGATAAAATC
GATTCTGTTCGACCTCGTTTGGCGAATCGTGCACGTATTTCTTCCTCGTT
GTTCAATCTTAACGACATTGATCGAGCAGTACGCGCTTCTTCTGATAAAC
GAATCGTATGGTCATTCTGTCTTTTAAGGTGGATCCAGGCGCTTGTATAA
AAGAACATCATTAATGCAAGGGGTAGTAAATATTGTAATAAAAACAAGAG
TATTGTATAGAATTTTGCTGTACCGGTATCCCAAATCTCTGCACAGTATC
GTAGCTCCGTCCCAGGGATAACTGCGAGTCTAATATGAACTGCGTAAGGA
ATAATAGTGACGTAACCATACACATGATTTGCAAATATCATTTTTAAAGT
ATGTTTTTGACAAGATCTCCAAGTCATCGGGTGGACTATAGCAATCCATC
GCTCGATTGTTATAGTCAGTAACGAGGATACTGAAACATTCACAGCCCAC
GTGGCAAATGGATAGATAAGTTGACATCCAAGTTCACCAAATATAAAATC
ATGATGGTGTCTTTTAGTTAACAGTTGGAACGGAATCGAAAATACTACAA
CACAAATATTGCAGAATGATAAATTGAGGACCAGATAATTCAAAGATGTT
TGAAGACGTTTATCGAATATGATTGCACTGATGACGACAAGGTTACCAAG
GAAACCAACGATGCAGATGATGATTTGTGGTATATCCTTAGCTTCAACTG
GTAACAAATCTGTAGGTTTTATTGTTGTGTTGTTACTCATGTTTCCAAGA
CGATGTTGTTGAATTTGTCAGTATGCTTTGGAATCAAACGGTTTATAGTG
TCTTCTCATTGCAGTTCAGTTGTGGTTAGATGttgacattttcatttttc
aatacttatttcgttttttt
Run BLAST on NCBI

protein sequence of TCONS_00000374-protein

>TCONS_00000374-protein ID=TCONS_00000374-protein|Name=TCONS_00000374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=639bp
MSNNTTIKPTDLLPVEAKDIPQIIICIVGFLGNLVVISAIIFDKRLQTSL
NYLVLNLSFCNICVVVFSIPFQLLTKRHHHDFIFGELGCQLIYPFATWAV
NVSVSSLLTITIERWIAIVHPMTWRSCQKHTLKMIFANHVYGYVTIIPYA
VHIRLAVIPGTELRYCAEIWDTGTAKFYTILLFLLQYLLPLALMMFFYTS
AWIHLKRQNDHTIRLSEEARTARSMSLRLNNEEEIRARFAKRGRTESILS
TTYSGEAKDMCLMFCLKMFRVSNYYKRTSSSASSSYDNADYFIANGRRRQ
TIRTFFMFLLIIVIFAISSLPNQIIWLVYSFKQGAKFSESVTSTFVIFHY
LNYIMNPFIYGGLNKYFLRAYKRLFLCSHSEENNNTSTTLAPPCSPGLTG
HPDLFREGIITRNPVNVISAGSLDSIYEEAEEEDEWSVATDKDQTPVSSP
PMSTKRVKFKFSVTSNPFRKLSTISNMSDQEKKERRHRKISQALVQDRQR
KLTLPALAASTSINHEDKARIRKHSVPAQIQNPKAFIFDDSFSVLPPTRV
NSSSLKDKLNLLTSRVSPRSSVTEILNNNTLPTKAVTSRRRKTGIFNMTD
SGSFETHNNGQKSCFDQISEESEVSSHSERSSLLXFRRI
Run BLAST on NCBI

transcript from alignment at sc0000001:2332355..2335374

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000374 ID=TCONS_00000374|Name=TCONS_00000374|organism=Clytia hemisphaerica|type=transcript|length=3020bp|location=Sequence derived from alignment at sc0000001:2332355..2335374 (Clytia hemisphaerica)
aaaaaaacgaaataagtattgaaaaatgaaaatgtcaaCATCTAACCACA ACTGAACTGCAATGAGAAGACACTATAAACCGTTTGATTCCAAAGCATAC TGACAAATTCAACAACATCGTCTTGGAAACATGAGTAACAACACAACAAT AAAACCTACAGATTTGTTACCAGTTGAAGCTAAGGATATACCACAAATCA TCATCTGCATCGTTGGTTTCCTTGGTAACCTTGTCGTCATCAGTGCAATC ATATTCGATAAACGTCTTCAAACATCTTTGAATTATCTGGTCCTCAATTT ATCATTCTGCAATATTTGTGTTGTAGTATTTTCGATTCCGTTCCAACTGT TAACTAAAAGACACCATCATGATTTTATATTTGGTGAACTTGGATGTCAA CTTATCTATCCATTTGCCACGTGGGCTGTGAATGTTTCAGTATCCTCGTT ACTGACTATAACAATCGAGCGATGGATTGCTATAGTCCACCCGATGACTT GGAGATCTTGTCAAAAACATACTTTAAAAATGATATTTGCAAATCATGTG TATGGTTACGTCACTATTATTCCTTACGCAGTTCATATTAGACTCGCAGT TATCCCTGGGACGGAGCTACGATACTGTGCAGAGATTTGGGATACCGGTA CAGCAAAATTCTATACAATACTCTTGTTTTTATTACAATATTTACTACCC CTTGCATTAATGATGTTCTTTTATACAAGCGCCTGGATCCACCTTAAAAG ACAGAATGACCATACGATTCGTTTATCAGAAGAAGCGCGTACTGCTCGAT CAATGTCGTTAAGATTGAACAACGAGGAAGAAATACGTGCACGATTCGCC AAACGAGGTCGAACAGAATCGATTTTATCGACAACTTATTCGGGAGAAGC TAAGGACATGTGTTTGATGTTTTGCTTGAAGATGTTCCGTGTTAGCAACT ATTATAAACGGACTTCGTCTTCGGCGTCCTCGTCATACGATAATGCCGAT TATTTCATCGCAAACGGTCGCCGACGGCAAACGATCCGAACATTTTTCAT GTTCCTTCTCATCATCGTGATCTTTGCAATCAGCTCGTTACCTAATCAAA TTATATGGCTTGTTTATAGTTTCAAACAAGGAGCTAAATTCTCAGAAAGT GTTACCTCAACATTTGTTATCTTCCATTACTTGAACTATATCATGAACCC ATTCATTTATGGTGGATTAAACAAATACTTCTTGAGAGCTTATAAACGTT TATTTTTGTGCTCTCATTCAGAGGAAAATAACAACACTTCAACAACATTA GCTCCTCCATGTTCACCCGGACTGACAGGACATCCAGATTTATTCCGGGA AGGAATTATCACTCGAAACCCGGTCAACGTTATAAGTGCCGGATCTCTTG ATTCTATTTATGAAGAGGCAGAAGAAGAGGACGAATGGAGCGTTGCGACG GATAAAGATCAAACGCCGGTTTCCTCACCTCCAATGTCAACAAAACGTGT TAAGTTCAAATTCTCAGTCACGTCAAATCCGTTCCGTAAATTATCAACCA TTTCGAATATGAGTGATCAAGAAAAGAAAGAGAGACGACATCGTAAGATT TCCCAAGCTCTGGTACAGGATCGGCAACGTAAGTTAACGTTACCCGCCTT AGCAGCCAGTACCAGTATAAATCATGAAGATAAAGCCAGAATACGTAAAC ATTCAGTACCAGCACAAATCCAAAATCCAAAAGCGTTCATCTTTGATGAT AGTTTCTCAGTACTTCCACCAACGCGAGTTAACAGTTCAAGCTTGAAAGA TAAACTGAATCTTCTAACAAGTAGAGTATCTCCAAGATCGAGTGTTactg aaattttgaataacaatACACTGCCAACTAAGGCAGTAACTTCGAGGCGT AGAAAAACAGGTATTTTCAATATGACTGATTCGGGGAGCTTTGAAACACA TAATAATGGACAGAAATCttgttttgatcaaatttcaGAAGAATCTGAAG TCTCAAGTCATTCTGAGCGAAGCAGTCTGCTTAGNTTCAGAAGAATCTGA AGTCTCAAGTCATTCTGAACGAAGCAGTCTGCTTAGTCATGATTCATTAA AGAGAAACAGCGGCATAACTCATAGTAAAACCTTCGGAGGGTTCCACAGG AACTCGTACATCGATAGTGAAACGAACTGTAAAAGATCGTCTTGTTATTC GCAACAATCTTTCGCTGAAAGTACTAACAGTCTTGATAATGATTGCACCA CTACTGAACAACCAACGTGGTATAATAATCGAAGTTTTGATCTCAAAGAC GGTAGCTATGAAGATGTTCACATTAATCTCAGCTCCAGtaatgaaaattt aattgaCTTGAAAAGAAATCTACTGGGTGATTTATCAAAAACCTCCGATA ATAAAGCTGAAATTGTTGAATATCCAAAGTTATCGTCAACTTTGGAAAAT TCAGATTCGAAACAAAATATTAGACGTTGCTCAAATACAGAAATTGACTG TGATAATATGGAAGAATCTCAGTCGTGTAGTGACAATCTCATTAATGATT CTAGAGCATGCGCAAACGATTTCAGACACAATCCCGGACAGGAAACTCGC GCATGCGCAAATGATAGTGACAATGAAGAATTAGATAAAATGCTGGAAGA AATAGAAAATCTCCGAGATTCTTGGTATCTTGACGGCTCCTCAGATGTCC AAGAGCAATTCTGCTATTTGTTGGCAAAACTGGAAAAGCATTCTTTGACA AGGCACCTGTCAACTTCTAAAAACATTTCAACACAAACTTCAGATAACAG GGATCTTGAAGACTCCAGCAGGTCTTCATGTATCGGTTATGAGGTTTCTG ATGAGATTTCTTCGATGGATAAAAGACAAAACTACAAAGACTATGATTTC GACAGCCTTGATGAAATGCCAGAATCttatctttaaaaattatttatgtT GTATatggaaaagaaatttttaagattgataaaatatttctaatgaaaaa tacactcaaaatgTTCAAAC

Coding sequence (CDS) from alignment at sc0000001:2332355..2335374

>TCONS_00000374 ID=TCONS_00000374|Name=TCONS_00000374|organism=Clytia hemisphaerica|type=CDS|length=1920bp|location=Sequence derived from alignment at sc0000001:2332355..2335374 (Clytia hemisphaerica)
ATGAGTAACAACACAACAATAAAACCTACAGATTTGTTACCAGTTGAAGC
TAAGGATATACCACAAATCATCATCTGCATCGTTGGTTTCCTTGGTAACC
TTGTCGTCATCAGTGCAATCATATTCGATAAACGTCTTCAAACATCTTTG
AATTATCTGGTCCTCAATTTATCATTCTGCAATATTTGTGTTGTAGTATT
TTCGATTCCGTTCCAACTGTTAACTAAAAGACACCATCATGATTTTATAT
TTGGTGAACTTGGATGTCAACTTATCTATCCATTTGCCACGTGGGCTGTG
AATGTTTCAGTATCCTCGTTACTGACTATAACAATCGAGCGATGGATTGC
TATAGTCCACCCGATGACTTGGAGATCTTGTCAAAAACATACTTTAAAAA
TGATATTTGCAAATCATGTGTATGGTTACGTCACTATTATTCCTTACGCA
GTTCATATTAGACTCGCAGTTATCCCTGGGACGGAGCTACGATACTGTGC
AGAGATTTGGGATACCGGTACAGCAAAATTCTATACAATACTCTTGTTTT
TATTACAATATTTACTACCCCTTGCATTAATGATGTTCTTTTATACAAGC
GCCTGGATCCACCTTAAAAGACAGAATGACCATACGATTCGTTTATCAGA
AGAAGCGCGTACTGCTCGATCAATGTCGTTAAGATTGAACAACGAGGAAG
AAATACGTGCACGATTCGCCAAACGAGGTCGAACAGAATCGATTTTATCG
ACAACTTATTCGGGAGAAGCTAAGGACATGTGTTTGATGTTTTGCTTGAA
GATGTTCCGTGTTAGCAACTATTATAAACGGACTTCGTCTTCGGCGTCCT
CGTCATACGATAATGCCGATTATTTCATCGCAAACGGTCGCCGACGGCAA
ACGATCCGAACATTTTTCATGTTCCTTCTCATCATCGTGATCTTTGCAAT
CAGCTCGTTACCTAATCAAATTATATGGCTTGTTTATAGTTTCAAACAAG
GAGCTAAATTCTCAGAAAGTGTTACCTCAACATTTGTTATCTTCCATTAC
TTGAACTATATCATGAACCCATTCATTTATGGTGGATTAAACAAATACTT
CTTGAGAGCTTATAAACGTTTATTTTTGTGCTCTCATTCAGAGGAAAATA
ACAACACTTCAACAACATTAGCTCCTCCATGTTCACCCGGACTGACAGGA
CATCCAGATTTATTCCGGGAAGGAATTATCACTCGAAACCCGGTCAACGT
TATAAGTGCCGGATCTCTTGATTCTATTTATGAAGAGGCAGAAGAAGAGG
ACGAATGGAGCGTTGCGACGGATAAAGATCAAACGCCGGTTTCCTCACCT
CCAATGTCAACAAAACGTGTTAAGTTCAAATTCTCAGTCACGTCAAATCC
GTTCCGTAAATTATCAACCATTTCGAATATGAGTGATCAAGAAAAGAAAG
AGAGACGACATCGTAAGATTTCCCAAGCTCTGGTACAGGATCGGCAACGT
AAGTTAACGTTACCCGCCTTAGCAGCCAGTACCAGTATAAATCATGAAGA
TAAAGCCAGAATACGTAAACATTCAGTACCAGCACAAATCCAAAATCCAA
AAGCGTTCATCTTTGATGATAGTTTCTCAGTACTTCCACCAACGCGAGTT
AACAGTTCAAGCTTGAAAGATAAACTGAATCTTCTAACAAGTAGAGTATC
TCCAAGATCGAGTGTTactgaaattttgaataacaatACACTGCCAACTA
AGGCAGTAACTTCGAGGCGTAGAAAAACAGGTATTTTCAATATGACTGAT
TCGGGGAGCTTTGAAACACATAATAATGGACAGAAATCttgttttgatca
aatttcaGAAGAATCTGAAGTCTCAAGTCATTCTGAGCGAAGCAGTCTGC
TTAGNTTCAGAAGAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000248XLOC_000248Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000374-proteinTCONS_00000374-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000374-exon-sc0000001-1491911889:2332355..2335374TCONS_00000374-exon-sc0000001-1491911889:2332355..2335374Clytia hemisphaericaexon
TCONS_00000374-exon-sc0000001-1510915933:2332355..2335374TCONS_00000374-exon-sc0000001-1510915933:2332355..2335374Clytia hemisphaericaexon
TCONS_00000374-exon-sc0000001-1575043694:2332355..2335374TCONS_00000374-exon-sc0000001-1575043694:2332355..2335374Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2332355..2335374 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.36601 0.4923 0.142902 0.0279614 28.696 17.7131 16.1128 16.8163 7.23215 12.3175 8.78453 6.01837 3.37433 3.2602 1.68416 0.792163 2.04651 3.21438 3.85052 2.99038 4.13673 4.48191 1.40369 1.97344 1.76158 1.68101 2.28439 1.01582 0.336201 0.770705
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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