TCONS_00000351 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000351
Unique NameTCONS_00000351
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000351 ID=TCONS_00000351|Name=TCONS_00000351|organism=Clytia hemisphaerica|type=transcript|length=645bp
TGAATATTTTGTCCGCTAGTGATAAGAATGAAACGATGAATTGGTAACCA
GGCAAGCTCAGGGAAACGAGCAAATAACTTTTCACTGGTGTAGCTCCTTA
AGTAAGTCAAGCACCCGATGATAACAGAAACTTTTGGATTTTTGGAAAGC
ACTTTCAACTCCATATAAGAACGTAGCGTGTATTTGTATTCTTCATATAA
ATAAAAGATGATTTCTCTTGAatcgttattattattatttatttcacCGT
AGAATTCGTCAACGAAACTGTACATTTCATCTCTTTTGATGGGTTGAAAA
TTGTGGGAAAGTTTCTCGAAGTCCGATCGAATGTCTTCGACATCATTGAT
CTCGATGAATTTACGGTTAGCCTGGTCGTACAGTCTTCCTTCGTAACATT
GATCTTGTAAAACAGTTTTTATAACCGACACAAGGAAAGGGTATTCATAT
CTATTActataaacaaacaaaatttccaCATCAGTAAAGACGGTCAGCCT
TGTCTTTTGAAGACAATATGTTTCTCTGGCTTCTGTTTCTTTGATAACCA
GTAACATTAATTGTATAAGGAGGAATATTCTCTTGGACCAAGCTAACCAA
CTCATTTTGTTTCCTTTGTTTTATAGTTAATTCaatgaaaaagtg
Run BLAST on NCBI

protein sequence of TCONS_00000351-protein

>TCONS_00000351-protein ID=TCONS_00000351-protein|Name=TCONS_00000351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MSWLAWSKRIFLLIQLMLLVIKETEARETYCLQKTRLTVFTDVEILFVYS
NRYEYPFLVSVIKTVLQDQCYEGRLYDQANRKFIEINDVEDIRSDFEKLS
HNFQPIKRDEMYSFVDEFYGEINNNNNDSREIIFYLYEEYKYTLRSYMEL
KVLSKNPKVSVIIGCLTYLRSYTSEKLFARFPELAWLPIHRFILITSGQN
I
Run BLAST on NCBI

transcript from alignment at sc0000001:1658198..1658842

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000351 ID=TCONS_00000351|Name=TCONS_00000351|organism=Clytia hemisphaerica|type=transcript|length=645bp|location=Sequence derived from alignment at sc0000001:1658198..1658842 (Clytia hemisphaerica)
cactttttcattGAATTAACTATAAAACAAAGGAAACAAAATGAGTTGGT
TAGCTTGGTCCAAGAGAATATTCCTCCTTATACAATTAATGTTACTGGTT
ATCAAAGAAACAGAAGCCAGAGAAACATATTGTCTTCAAAAGACAAGGCT
GACCGTCTTTACTGATGtggaaattttgtttgtttatagTAATAGATATG
AATACCCTTTCCTTGTGTCGGTTATAAAAACTGTTTTACAAGATCAATGT
TACGAAGGAAGACTGTACGACCAGGCTAACCGTAAATTCATCGAGATCAA
TGATGTCGAAGACATTCGATCGGACTTCGAGAAACTTTCCCACAATTTTC
AACCCATCAAAAGAGATGAAATGTACAGTTTCGTTGACGAATTCTACGgt
gaaataaataataataataacgatTCAAGAGAAATCATCTTTTATTTATA
TGAAGAATACAAATACACGCTACGTTCTTATATGGAGTTGAAAGTGCTTT
CCAAAAATCCAAAAGTTTCTGTTATCATCGGGTGCTTGACTTACTTAAGG
AGCTACACCAGTGAAAAGTTATTTGCTCGTTTCCCTGAGCTTGCCTGGTT
ACCAATTCATCGTTTCATTCTTATCACTAGCGGACAAAATATTCA

Coding sequence (CDS) from alignment at sc0000001:1658198..1658842

>TCONS_00000351 ID=TCONS_00000351|Name=TCONS_00000351|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0000001:1658198..1658842 (Clytia hemisphaerica)
ATGAGTTGGTTAGCTTGGTCCAAGAGAATATTCCTCCTTATACAATTAAT
GTTACTGGTTATCAAAGAAACAGAAGCCAGAGAAACATATTGTCTTCAAA
AGACAAGGCTGACCGTCTTTACTGATGtggaaattttgtttgtttatagT
AATAGATATGAATACCCTTTCCTTGTGTCGGTTATAAAAACTGTTTTACA
AGATCAATGTTACGAAGGAAGACTGTACGACCAGGCTAACCGTAAATTCA
TCGAGATCAATGATGTCGAAGACATTCGATCGGACTTCGAGAAACTTTCC
CACAATTTTCAACCCATCAAAAGAGATGAAATGTACAGTTTCGTTGACGA
ATTCTACGgtgaaataaataataataataacgatTCAAGAGAAATCATCT
TTTATTTATATGAAGAATACAAATACACGCTACGTTCTTATATGGAGTTG
AAAGTGCTTTCCAAAAATCCAAAAGTTTCTGTTATCATCGGGTGCTTGAC
TTACTTAAGGAGCTACACCAGTGAAAAGTTATTTGCTCGTTTCCCTGAGC
TTGCCTGGTTACCAATTCATCGTTTCATTCTTATCACTAGCGGACAAAAT
ATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000225XLOC_000225Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000351-proteinTCONS_00000351-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000351-exon-sc0000001-1491911889:1658198..1658842TCONS_00000351-exon-sc0000001-1491911889:1658198..1658842Clytia hemisphaericaexon
TCONS_00000351-exon-sc0000001-1510915933:1658198..1658842TCONS_00000351-exon-sc0000001-1510915933:1658198..1658842Clytia hemisphaericaexon
TCONS_00000351-exon-sc0000001-1575043694:1658198..1658842TCONS_00000351-exon-sc0000001-1575043694:1658198..1658842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1658198..1658842 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78249	1.52194	1.27267	1.42376	0.222825	0.168648	1.24716	1.37433	1.36184	0.870868	0.875715	1.89134	2.6615	1.74148	8.25595	5.51222	0.875737	2.24273	2.07676	3.14188	0.477534	0.489799	0.881189	1.2568	0	0	1.16403	0.595383	0.524264	1.06106
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000351 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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