TCONS_00000348 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000348
Unique NameTCONS_00000348
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000348 ID=TCONS_00000348|Name=TCONS_00000348|organism=Clytia hemisphaerica|type=transcript|length=436bp
ttttaattggatAAGAACAAGAAATTCTTCGTCAATTTGCATCCCACCAT
ATCAGGAGATGACTGTAGCCTAGGTTGGCTGAGTTTTAAGCAACATTCTT
TGACTACACTTCTGGTATTCCGATTGCATTTTGCACTGCCTATAAGATAT
ACAAATGAATTCCTTTCAATCGACGTTTCGAGGAGGTAATGCCTCAGTTT
CAATGGAAAAAGGTCGTGAGAAAATCTGAATCATGATAGATCACTAAAAG
TAACACGGGAAATCTTTAACGGTGATTGTTAAAATTTATTAAATACTGTA
TTAATTGTGTAAAGGGTTGTATAATGTTGGAGAAAATGATTGCTCTTTGT
TACATTTATAGAGGATATAAAATATATACATTataatgttataatttttt
attaaagaTATTATGTTGTATGTATGGAATATAAag
Run BLAST on NCBI

transcript from alignment at sc0000001:1578749..1579184

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000348 ID=TCONS_00000348|Name=TCONS_00000348|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at sc0000001:1578749..1579184 (Clytia hemisphaerica)
ctTTATATTCCATACATACAACATAATAtctttaataaaaaattataaca
ttatAATGTATATATTTTATATCCTCTATAAATGTAACAAAGAGCAATCA
TTTTCTCCAACATTATACAACCCTTTACACAATTAATACAGTATTTAATA
AATTTTAACAATCACCGTTAAAGATTTCCCGTGTTACTTTTAGTGATCTA
TCATGATTCAGATTTTCTCACGACCTTTTTCCATTGAAACTGAGGCATTA
CCTCCTCGAAACGTCGATTGAAAGGAATTCATTTGTATATCTTATAGGCA
GTGCAAAATGCAATCGGAATACCAGAAGTGTAGTCAAAGAATGTTGCTTA
AAACTCAGCCAACCTAGGCTACAGTCATCTCCTGATATGGTGGGATGCAA
ATTGACGAAGAATTTCTTGTTCTTatccaattaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000222XLOC_000222Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000348-exon-sc0000001-1491911889:1578749..1579184TCONS_00000348-exon-sc0000001-1491911889:1578749..1579184Clytia hemisphaericaexon
TCONS_00000348-exon-sc0000001-1510915933:1578749..1579184TCONS_00000348-exon-sc0000001-1510915933:1578749..1579184Clytia hemisphaericaexon
TCONS_00000348-exon-sc0000001-1575043694:1578749..1579184TCONS_00000348-exon-sc0000001-1575043694:1578749..1579184Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1578749..1579184 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.200935	1.12868	9.95099	4.53829	4.6967	3.41361	0	0	0.58461	0.857146	0	0	0	0.173853	0.420487	0.884472	2.70613	1.60471	0	0	0.271088	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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