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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000347 ID=TCONS_00000347|Name=TCONS_00000347|organism=Clytia hemisphaerica|type=transcript|length=2040bp
TATCATTCATCGGGCGttcaagacttcaaaaataatttcccgatttcact
ttcgatttcaatttCGGATTTTTTGTAGAGAATCGGGATTTTCGGGTGGA
ACATTATCTCCTTAATGGTGCGCTCCTATTTTCTTCAACTTAGCAATATT
AGCTTCTTAATAAACtgccactttttttaataaactgCCACACAAATCGT
TGTAGAATTTTGGGCTGACCACGTCAACTTAATCTTGCAGAGTGTTAAAA
GGGTGAGAATTTTCTTACACTGTTTGATTCCACGTTTTAGTGTAGCAAGG
CAAGTGTAATTATACCTCACTTGTTTGCTATCAGTAAAAGAGAGCATACA
GCTTGCCTGTGTTATATATCAGGCAAGCAGCTACACCCCAGAGGTTGCAT
GCGAGCTCCTTGCATCCTCTTGCTAATAAATTTAAACCTATTAAACTTAT
TAAACCTATTCAACTTTGTTCAAAAAGACAATCTACCATTCTTAAAGCTT
CAAACTCTTGAAAAGATCCACAATATTTCAAGTATGCCAGCTTATCAAGT
TTCAAAAGCTGTTTTGGGTTCTTTTAATCAAGCCAATAGAGAGATATTTG
GCCAAACAGCAGGTACACAATGCAGTGCAAACTGTCTTTACGCCATATTT
TGGTCCTATGTAAGACGTACGTCGATTTGGAAAACTAATGATTTAGATAA
AATTTTAATAGAAGGAGACAAATTATATAAACAACTGAATACTAATGATT
ATTTATCAGAGAAGAAAAATTGAAGCCTTATAATTTACACCGTATTTTGA
CAAAGCGAATAGGATTTAGTGATTTTGTTTTTTAACGGTATATTTTTTGT
GGAAAATTTTAGTTTCTATCTGCCATTTGTAGTAAAAACAGGCGGGTCGC
TCATTGCCGCTCAACTTTGGTGGGATGGGGACTTCAAATCCCACCAAGAA
GATTCAATTCTAGCCCTTCGGGTTTATATTTCATTGGTTGGGTCCGTGTG
GAGTGCATAAACGCGGGAAAACACGGAACTCGAAAATTTGCGTCGTCCGT
GCATAAAATCAAAACAAGAATTCTCGGCTCGGGATCGAGATGAAGTGTTA
GTGAACTAAAATTGttcaaattgaaattattttgataaaccCCTAGAACc
ctaaacaaaagcaaaaaagcTTCTAAAATACCTCAAGTCTCAAGAATCTC
TAATTAACGGTAGTATCAACCATCTTTTAGTTTAGAAAGTTTAATCCCCT
ttcttcaaaaggttttcttcttgcagccaaaatcaaagaaagctaAGTTT
CAAGCCAGTCTTGCAAACAGGGATGTATAATAAAATGATTCCAAGAATAT
ATTAATCAATAATCTCGTGAAATTTAAGATTTAGAAATAAAataatggaa
aaatatttttgctacaTCATTATTTAAAAATCTAACAAAGTTCTAAGTTT
GtggaaattttcaacaaaactaCAGTATGATAAAATGTGTAACAGACGTT
AAATcacgataaaaaagcggttttcgtctaacaggctatagaagacgatg
ctatcgtccgtttaagaATTCAGTTAACGCGAGAAAAtagtcagggcggt
ttacgggaaaaaagtggcggtcgaattttggaacaaaacgctgtaaacac
ctccgcctCGAGCTAACCACCCGTTCACAAATTTTTCCCGCCTCCTAAAC
TACTTTCTTTTAGTGATctttgtgtagacgataggatcgtctgtGTAGat
gataggatcgtctaatcctttagtgcctttttaaagtcaaaaatcgTATT
AAAAGAATAATTTGCATTTTAAAAGGCATCCTCCTTTTTATTTAACAATT
CGCAaaaagtttatgcttgcgaaaaagattttatattacagcttaaaaag
aaaattctacATAATCCGCTGAAATATTTCTTTGTGTtcgtaaaatttaa
aagaaatcgATCGACACAGGTAATAATCTTGGTAGTCGTTTATTTTTCTC
ATCGTTGCGTTCAAATCAATGTGGTATTGCGGAGGTTTGT Run BLAST on NCBI protein sequence of TCONS_00000347-protein >TCONS_00000347-protein ID=TCONS_00000347-protein|Name=TCONS_00000347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MRAPCILLLINLNLLNLLNLFNFVQKDNLPFLKLQTLEKIHNISSMPAYQ
VSKAVLGSFNQANREIFGQTAGTQCSANCLYAIFWSYVRRTSIWKTNDLD
KILIEGDKLYKQLNTNDYLSEKKN Run BLAST on NCBI transcript from alignment at sc0000001:1575620..1577659 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000347 ID=TCONS_00000347|Name=TCONS_00000347|organism=Clytia hemisphaerica|type=transcript|length=2040bp|location=Sequence derived from alignment at sc0000001:1575620..1577659 (Clytia hemisphaerica)
ACAAACCTCCGCAATACCACATTGATTTGAACGCAACGATGAGAAAAATA
AACGACTACCAAGATTATTACCTGTGTCGATcgatttcttttaaatttta
cgaACACAAAGAAATATTTCAGCGGATTATgtagaattttctttttaagc
tgtaatataaaatctttttcgcaagcataaacttttTGCGAATTGTTAAA
TAAAAAGGAGGATGCCTTTTAAAATGCAAATTATTCTTTTAATAcgattt
ttgactttaaaaaggcactaaaggattagacgatcctatcatCTACacag
acgatcctatcgtctacacaaagATCACTAAAAGAAAGTAGTTTAGGAGG
CGGGAAAAATTTGTGAACGGGTGGTTAGCTCGaggcggaggtgtttacag
cgttttgttccaaaattcgaccgccacttttttcccgtaaaccgccctga
ctaTTTTCTCGCGTTAACTGAATtcttaaacggacgatagcatcgtcttc
tatagcctgttagacgaaaaccgcttttttatcgtgATTTAACGTCTGTT
ACACATTTTATCATACTGtagttttgttgaaaatttccaCAAACTTAGAA
CTTTGTTAGATTTTTAAATAATGAtgtagcaaaaatatttttccattatT
TTATTTCTAAATCTTAAATTTCACGAGATTATTGATTAATATATTCTTGG
AATCATTTTATTATACATCCCTGTTTGCAAGACTGGCTTGAAACTtagct
ttctttgattttggctgcaagaagaaaaccttttgaagaaAGGGGATTAA
ACTTTCTAAACTAAAAGATGGTTGATACTACCGTTAATTAGAGATTCTTG
AGACTTGAGGTATTTTAGAAgcttttttgcttttgtttaggGTTCTAGGg
gtttatcaaaataatttcaatttgaaCAATTTTAGTTCACTAACACTTCA
TCTCGATCCCGAGCCGAGAATTCTTGTTTTGATTTTATGCACGGACGACG
CAAATTTTCGAGTTCCGTGTTTTCCCGCGTTTATGCACTCCACACGGACC
CAACCAATGAAATATAAACCCGAAGGGCTAGAATTGAATCTTCTTGGTGG
GATTTGAAGTCCCCATCCCACCAAAGTTGAGCGGCAATGAGCGACCCGCC
TGTTTTTACTACAAATGGCAGATAGAAACTAAAATTTTCCACAAAAAATA
TACCGTTAAAAAACAAAATCACTAAATCCTATTCGCTTTGTCAAAATACG
GTGTAAATTATAAGGCTTCAATTTTTCTTCTCTGATAAATAATCATTAGT
ATTCAGTTGTTTATATAATTTGTCTCCTTCTATTAAAATTTTATCTAAAT
CATTAGTTTTCCAAATCGACGTACGTCTTACATAGGACCAAAATATGGCG
TAAAGACAGTTTGCACTGCATTGTGTACCTGCTGTTTGGCCAAATATCTC
TCTATTGGCTTGATTAAAAGAACCCAAAACAGCTTTTGAAACTTGATAAG
CTGGCATACTTGAAATATTGTGGATCTTTTCAAGAGTTTGAAGCTTTAAG
AATGGTAGATTGTCTTTTTGAACAAAGTTGAATAGGTTTAATAAGTTTAA
TAGGTTTAAATTTATTAGCAAGAGGATGCAAGGAGCTCGCATGCAACCTC
TGGGGTGTAGCTGCTTGCCTGATATATAACACAGGCAAGCTGTATGCTCT
CTTTTACTGATAGCAAACAAGTGAGGTATAATTACACTTGCCTTGCTACA
CTAAAACGTGGAATCAAACAGTGTAAGAAAATTCTCACCCTTTTAACACT
CTGCAAGATTAAGTTGACGTGGTCAGCCCAAAATTCTACAACGATTTGTG
TGGcagtttattaaaaaaagtggcaGTTTATTAAGAAGCTAATATTGCTA
AGTTGAAGAAAATAGGAGCGCACCATTAAGGAGATAATGTTCCACCCGAA
AATCCCGATTCTCTACAAAAAATCCGaaattgaaatcgaaagtgaaatcg
ggaaattatttttgaagtcttgaaCGCCCGATGAATGATA Coding sequence (CDS) from alignment at sc0000001:1575620..1577659 >TCONS_00000347 ID=TCONS_00000347|Name=TCONS_00000347|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0000001:1575620..1577659 (Clytia hemisphaerica)
TCAATTTTTCTTCTCTGATAAATAATCATTAGTATTCAGTTGTTTATATA
ATTTGTCTCCTTCTATTAAAATTTTATCTAAATCATTAGTTTTCCAAATC
GACGTACGTCTTACATAGGACCAAAATATGGCGTAAAGACAGTTTGCACT
GCATTGTGTACCTGCTGTTTGGCCAAATATCTCTCTATTGGCTTGATTAA
AAGAACCCAAAACAGCTTTTGAAACTTGATAAGCTGGCATACTTGAAATA
TTGTGGATCTTTTCAAGAGTTTGAAGCTTTAAGAATGGTAGATTGTCTTT
TTGAACAAAGTTGAATAGGTTTAATAAGTTTAATAGGTTTAAATTTATTA
GCAAGAGGATGCAAGGAGCTCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000347-exon-sc0000001-1491911889:1575620..1577659 | TCONS_00000347-exon-sc0000001-1491911889:1575620..1577659 | Clytia hemisphaerica | exon |
| TCONS_00000347-exon-sc0000001-1510915933:1575620..1577659 | TCONS_00000347-exon-sc0000001-1510915933:1575620..1577659 | Clytia hemisphaerica | exon |
| TCONS_00000347-exon-sc0000001-1575043694:1575620..1577659 | TCONS_00000347-exon-sc0000001-1575043694:1575620..1577659 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1575620..1577659 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006928 | htUSP_central_domain |
Blast
The following BLAST results are available for this feature:
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