Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000347
Unique NameTCONS_00000347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2040

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000347 ID=TCONS_00000347|Name=TCONS_00000347|organism=Clytia hemisphaerica|type=transcript|length=2040bp
TATCATTCATCGGGCGttcaagacttcaaaaataatttcccgatttcact
ttcgatttcaatttCGGATTTTTTGTAGAGAATCGGGATTTTCGGGTGGA
ACATTATCTCCTTAATGGTGCGCTCCTATTTTCTTCAACTTAGCAATATT
AGCTTCTTAATAAACtgccactttttttaataaactgCCACACAAATCGT
TGTAGAATTTTGGGCTGACCACGTCAACTTAATCTTGCAGAGTGTTAAAA
GGGTGAGAATTTTCTTACACTGTTTGATTCCACGTTTTAGTGTAGCAAGG
CAAGTGTAATTATACCTCACTTGTTTGCTATCAGTAAAAGAGAGCATACA
GCTTGCCTGTGTTATATATCAGGCAAGCAGCTACACCCCAGAGGTTGCAT
GCGAGCTCCTTGCATCCTCTTGCTAATAAATTTAAACCTATTAAACTTAT
TAAACCTATTCAACTTTGTTCAAAAAGACAATCTACCATTCTTAAAGCTT
CAAACTCTTGAAAAGATCCACAATATTTCAAGTATGCCAGCTTATCAAGT
TTCAAAAGCTGTTTTGGGTTCTTTTAATCAAGCCAATAGAGAGATATTTG
GCCAAACAGCAGGTACACAATGCAGTGCAAACTGTCTTTACGCCATATTT
TGGTCCTATGTAAGACGTACGTCGATTTGGAAAACTAATGATTTAGATAA
AATTTTAATAGAAGGAGACAAATTATATAAACAACTGAATACTAATGATT
ATTTATCAGAGAAGAAAAATTGAAGCCTTATAATTTACACCGTATTTTGA
CAAAGCGAATAGGATTTAGTGATTTTGTTTTTTAACGGTATATTTTTTGT
GGAAAATTTTAGTTTCTATCTGCCATTTGTAGTAAAAACAGGCGGGTCGC
TCATTGCCGCTCAACTTTGGTGGGATGGGGACTTCAAATCCCACCAAGAA
GATTCAATTCTAGCCCTTCGGGTTTATATTTCATTGGTTGGGTCCGTGTG
GAGTGCATAAACGCGGGAAAACACGGAACTCGAAAATTTGCGTCGTCCGT
GCATAAAATCAAAACAAGAATTCTCGGCTCGGGATCGAGATGAAGTGTTA
GTGAACTAAAATTGttcaaattgaaattattttgataaaccCCTAGAACc
ctaaacaaaagcaaaaaagcTTCTAAAATACCTCAAGTCTCAAGAATCTC
TAATTAACGGTAGTATCAACCATCTTTTAGTTTAGAAAGTTTAATCCCCT
ttcttcaaaaggttttcttcttgcagccaaaatcaaagaaagctaAGTTT
CAAGCCAGTCTTGCAAACAGGGATGTATAATAAAATGATTCCAAGAATAT
ATTAATCAATAATCTCGTGAAATTTAAGATTTAGAAATAAAataatggaa
aaatatttttgctacaTCATTATTTAAAAATCTAACAAAGTTCTAAGTTT
GtggaaattttcaacaaaactaCAGTATGATAAAATGTGTAACAGACGTT
AAATcacgataaaaaagcggttttcgtctaacaggctatagaagacgatg
ctatcgtccgtttaagaATTCAGTTAACGCGAGAAAAtagtcagggcggt
ttacgggaaaaaagtggcggtcgaattttggaacaaaacgctgtaaacac
ctccgcctCGAGCTAACCACCCGTTCACAAATTTTTCCCGCCTCCTAAAC
TACTTTCTTTTAGTGATctttgtgtagacgataggatcgtctgtGTAGat
gataggatcgtctaatcctttagtgcctttttaaagtcaaaaatcgTATT
AAAAGAATAATTTGCATTTTAAAAGGCATCCTCCTTTTTATTTAACAATT
CGCAaaaagtttatgcttgcgaaaaagattttatattacagcttaaaaag
aaaattctacATAATCCGCTGAAATATTTCTTTGTGTtcgtaaaatttaa
aagaaatcgATCGACACAGGTAATAATCTTGGTAGTCGTTTATTTTTCTC
ATCGTTGCGTTCAAATCAATGTGGTATTGCGGAGGTTTGT
Run BLAST on NCBI

protein sequence of TCONS_00000347-protein

>TCONS_00000347-protein ID=TCONS_00000347-protein|Name=TCONS_00000347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MRAPCILLLINLNLLNLLNLFNFVQKDNLPFLKLQTLEKIHNISSMPAYQ
VSKAVLGSFNQANREIFGQTAGTQCSANCLYAIFWSYVRRTSIWKTNDLD
KILIEGDKLYKQLNTNDYLSEKKN
Run BLAST on NCBI

transcript from alignment at sc0000001:1575620..1577659

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000347 ID=TCONS_00000347|Name=TCONS_00000347|organism=Clytia hemisphaerica|type=transcript|length=2040bp|location=Sequence derived from alignment at sc0000001:1575620..1577659 (Clytia hemisphaerica)
ACAAACCTCCGCAATACCACATTGATTTGAACGCAACGATGAGAAAAATA AACGACTACCAAGATTATTACCTGTGTCGATcgatttcttttaaatttta cgaACACAAAGAAATATTTCAGCGGATTATgtagaattttctttttaagc tgtaatataaaatctttttcgcaagcataaacttttTGCGAATTGTTAAA TAAAAAGGAGGATGCCTTTTAAAATGCAAATTATTCTTTTAATAcgattt ttgactttaaaaaggcactaaaggattagacgatcctatcatCTACacag acgatcctatcgtctacacaaagATCACTAAAAGAAAGTAGTTTAGGAGG CGGGAAAAATTTGTGAACGGGTGGTTAGCTCGaggcggaggtgtttacag cgttttgttccaaaattcgaccgccacttttttcccgtaaaccgccctga ctaTTTTCTCGCGTTAACTGAATtcttaaacggacgatagcatcgtcttc tatagcctgttagacgaaaaccgcttttttatcgtgATTTAACGTCTGTT ACACATTTTATCATACTGtagttttgttgaaaatttccaCAAACTTAGAA CTTTGTTAGATTTTTAAATAATGAtgtagcaaaaatatttttccattatT TTATTTCTAAATCTTAAATTTCACGAGATTATTGATTAATATATTCTTGG AATCATTTTATTATACATCCCTGTTTGCAAGACTGGCTTGAAACTtagct ttctttgattttggctgcaagaagaaaaccttttgaagaaAGGGGATTAA ACTTTCTAAACTAAAAGATGGTTGATACTACCGTTAATTAGAGATTCTTG AGACTTGAGGTATTTTAGAAgcttttttgcttttgtttaggGTTCTAGGg gtttatcaaaataatttcaatttgaaCAATTTTAGTTCACTAACACTTCA TCTCGATCCCGAGCCGAGAATTCTTGTTTTGATTTTATGCACGGACGACG CAAATTTTCGAGTTCCGTGTTTTCCCGCGTTTATGCACTCCACACGGACC CAACCAATGAAATATAAACCCGAAGGGCTAGAATTGAATCTTCTTGGTGG GATTTGAAGTCCCCATCCCACCAAAGTTGAGCGGCAATGAGCGACCCGCC TGTTTTTACTACAAATGGCAGATAGAAACTAAAATTTTCCACAAAAAATA TACCGTTAAAAAACAAAATCACTAAATCCTATTCGCTTTGTCAAAATACG GTGTAAATTATAAGGCTTCAATTTTTCTTCTCTGATAAATAATCATTAGT ATTCAGTTGTTTATATAATTTGTCTCCTTCTATTAAAATTTTATCTAAAT CATTAGTTTTCCAAATCGACGTACGTCTTACATAGGACCAAAATATGGCG TAAAGACAGTTTGCACTGCATTGTGTACCTGCTGTTTGGCCAAATATCTC TCTATTGGCTTGATTAAAAGAACCCAAAACAGCTTTTGAAACTTGATAAG CTGGCATACTTGAAATATTGTGGATCTTTTCAAGAGTTTGAAGCTTTAAG AATGGTAGATTGTCTTTTTGAACAAAGTTGAATAGGTTTAATAAGTTTAA TAGGTTTAAATTTATTAGCAAGAGGATGCAAGGAGCTCGCATGCAACCTC TGGGGTGTAGCTGCTTGCCTGATATATAACACAGGCAAGCTGTATGCTCT CTTTTACTGATAGCAAACAAGTGAGGTATAATTACACTTGCCTTGCTACA CTAAAACGTGGAATCAAACAGTGTAAGAAAATTCTCACCCTTTTAACACT CTGCAAGATTAAGTTGACGTGGTCAGCCCAAAATTCTACAACGATTTGTG TGGcagtttattaaaaaaagtggcaGTTTATTAAGAAGCTAATATTGCTA AGTTGAAGAAAATAGGAGCGCACCATTAAGGAGATAATGTTCCACCCGAA AATCCCGATTCTCTACAAAAAATCCGaaattgaaatcgaaagtgaaatcg ggaaattatttttgaagtcttgaaCGCCCGATGAATGATA

Coding sequence (CDS) from alignment at sc0000001:1575620..1577659

>TCONS_00000347 ID=TCONS_00000347|Name=TCONS_00000347|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0000001:1575620..1577659 (Clytia hemisphaerica)
TCAATTTTTCTTCTCTGATAAATAATCATTAGTATTCAGTTGTTTATATA
ATTTGTCTCCTTCTATTAAAATTTTATCTAAATCATTAGTTTTCCAAATC
GACGTACGTCTTACATAGGACCAAAATATGGCGTAAAGACAGTTTGCACT
GCATTGTGTACCTGCTGTTTGGCCAAATATCTCTCTATTGGCTTGATTAA
AAGAACCCAAAACAGCTTTTGAAACTTGATAAGCTGGCATACTTGAAATA
TTGTGGATCTTTTCAAGAGTTTGAAGCTTTAAGAATGGTAGATTGTCTTT
TTGAACAAAGTTGAATAGGTTTAATAAGTTTAATAGGTTTAAATTTATTA
GCAAGAGGATGCAAGGAGCTCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000221XLOC_000221Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000347-proteinTCONS_00000347-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000347-exon-sc0000001-1491911889:1575620..1577659TCONS_00000347-exon-sc0000001-1491911889:1575620..1577659Clytia hemisphaericaexon
TCONS_00000347-exon-sc0000001-1510915933:1575620..1577659TCONS_00000347-exon-sc0000001-1510915933:1575620..1577659Clytia hemisphaericaexon
TCONS_00000347-exon-sc0000001-1575043694:1575620..1577659TCONS_00000347-exon-sc0000001-1575043694:1575620..1577659Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1575620..1577659 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.287237 0.155302 0.260438 0.206002 1.82213 1.0841 1.8972 2.81551 1.4188 2.07168 1.65506 1.13054 1.17232 1.64875 1.31687 0.776709 0.990919 1.43933 0.960497 1.20338 1.81828 1.64846 0.698706 0.867494 1.87548 1.77892 1.16086 0.82712 1.29068 0.819408
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006928htUSP_central_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top