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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000329 ID=TCONS_00000329|Name=TCONS_00000329|organism=Clytia hemisphaerica|type=transcript|length=798bp
NNAAAGTTAATCCTTCCAAACTGAAGTCCCACCCATGGTGCAAAGTTGTA
TCGACATCTGACACTGACAAAGCCAAATCTTACTACTTCAAGAAATGCAC
GGCAGAGGTTCAACACTTTCTGCCAAAGAAAAAGTATGAGAAGATTTCAA
GGATGAAAGATGGAGTTCTCATTTACACCGGAAGAGTCTTAACATCTGAT
GACATCACTGTTACCGGAAGATTTACAAAGGCAATGAAAGATCTCTCATC
CACAAGCTTCTGCGTCCCCTTGGTTGATAAACACTCACCTGTTGCATACG
CCATTGTTAATGACGTACACTGGAATGACCAGAATGCTTCTCATCGGGGA
ATAGAAACAACTTTGAGAGCCGTACTCAGACATGCTTACATATTGGAAGT
TAGATCAATCATCAAAGCCATCAAACGATCGTGTCCTAGATGCAGATACC
TTGAGAAGAAAACTATCGAAGTTGCTATGGGTCCAATTCCAAGCTCAAGA
CTCACTATTGCTCCTGCGTTTTACATGTGTCAAGTTGATCTATCGGGTCC
ATACAAAGCATTCTCTCCACACAACAAACGAGCCACGATCAAAATCTGGC
TTGTAGTATTTTGCTGCTCAACTACCTCGTCAACTTCAATTAAAGTCATG
GACGATTATTCTACACCTGCTTTCTTACAAGCCTTCATTCGTTTCGCCAG
TGATGCAGGCTTTCCAAAAACCCTCTACTGTGACGAAGGAAGTCAATTGC
TCAAGGGTTGCAAAGATATGAGACTGAAATTCAAGGATACTGTGAATN Run BLAST on NCBI protein sequence of TCONS_00000329-protein >TCONS_00000329-protein ID=TCONS_00000329-protein|Name=TCONS_00000329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
KVNPSKLKSHPWCKVVSTSDTDKAKSYYFKKCTAEVQHFLPKKKYEKISR
MKDGVLIYTGRVLTSDDITVTGRFTKAMKDLSSTSFCVPLVDKHSPVAYA
IVNDVHWNDQNASHRGIETTLRAVLRHAYILEVRSIIKAIKRSCPRCRYL
EKKTIEVAMGPIPSSRLTIAPAFYMCQVDLSGPYKAFSPHNKRATIKIWL
VVFCCSTTSSTSIKVMDDYSTPAFLQAFIRFASDAGFPKTLYCDEGSQLL
KGCKDMRLKFKDTVN Run BLAST on NCBI transcript from alignment at sc0000001:1320878..1321675 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000329 ID=TCONS_00000329|Name=TCONS_00000329|organism=Clytia hemisphaerica|type=transcript|length=798bp|location=Sequence derived from alignment at sc0000001:1320878..1321675 (Clytia hemisphaerica)
NATTCACAGTATCCTTGAATTTCAGTCTCATATCTTTGCAACCCTTGAGC
AATTGACTTCCTTCGTCACAGTAGAGGGTTTTTGGAAAGCCTGCATCACT
GGCGAAACGAATGAAGGCTTGTAAGAAAGCAGGTGTAGAATAATCGTCCA
TGACTTTAATTGAAGTTGACGAGGTAGTTGAGCAGCAAAATACTACAAGC
CAGATTTTGATCGTGGCTCGTTTGTTGTGTGGAGAGAATGCTTTGTATGG
ACCCGATAGATCAACTTGACACATGTAAAACGCAGGAGCAATAGTGAGTC
TTGAGCTTGGAATTGGACCCATAGCAACTTCGATAGTTTTCTTCTCAAGG
TATCTGCATCTAGGACACGATCGTTTGATGGCTTTGATGATTGATCTAAC
TTCCAATATGTAAGCATGTCTGAGTACGGCTCTCAAAGTTGTTTCTATTC
CCCGATGAGAAGCATTCTGGTCATTCCAGTGTACGTCATTAACAATGGCG
TATGCAACAGGTGAGTGTTTATCAACCAAGGGGACGCAGAAGCTTGTGGA
TGAGAGATCTTTCATTGCCTTTGTAAATCTTCCGGTAACAGTGATGTCAT
CAGATGTTAAGACTCTTCCGGTGTAAATGAGAACTCCATCTTTCATCCTT
GAAATCTTCTCATACTTTTTCTTTGGCAGAAAGTGTTGAACCTCTGCCGT
GCATTTCTTGAAGTAGTAAGATTTGGCTTTGTCAGTGTCAGATGTCGATA
CAACTTTGCACCATGGGTGGGACTTCAGTTTGGAAGGATTAACTTTNN Coding sequence (CDS) from alignment at sc0000001:1320878..1321675 >TCONS_00000329 ID=TCONS_00000329|Name=TCONS_00000329|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at sc0000001:1320878..1321675 (Clytia hemisphaerica)
ATTCACAGTATCCTTGAATTTCAGTCTCATATCTTTGCAACCCTTGAGCA
ATTGACTTCCTTCGTCACAGTAGAGGGTTTTTGGAAAGCCTGCATCACTG
GCGAAACGAATGAAGGCTTGTAAGAAAGCAGGTGTAGAATAATCGTCCAT
GACTTTAATTGAAGTTGACGAGGTAGTTGAGCAGCAAAATACTACAAGCC
AGATTTTGATCGTGGCTCGTTTGTTGTGTGGAGAGAATGCTTTGTATGGA
CCCGATAGATCAACTTGACACATGTAAAACGCAGGAGCAATAGTGAGTCT
TGAGCTTGGAATTGGACCCATAGCAACTTCGATAGTTTTCTTCTCAAGGT
ATCTGCATCTAGGACACGATCGTTTGATGGCTTTGATGATTGATCTAACT
TCCAATATGTAAGCATGTCTGAGTACGGCTCTCAAAGTTGTTTCTATTCC
CCGATGAGAAGCATTCTGGTCATTCCAGTGTACGTCATTAACAATGGCGT
ATGCAACAGGTGAGTGTTTATCAACCAAGGGGACGCAGAAGCTTGTGGAT
GAGAGATCTTTCATTGCCTTTGTAAATCTTCCGGTAACAGTGATGTCATC
AGATGTTAAGACTCTTCCGGTGTAAATGAGAACTCCATCTTTCATCCTTG
AAATCTTCTCATACTTTTTCTTTGGCAGAAAGTGTTGAACCTCTGCCGTG
CATTTCTTGAAGTAGTAAGATTTGGCTTTGTCAGTGTCAGATGTCGATAC
AACTTTGCACCATGGGTGGGACTTCAGTTTGGAAGGATTAACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000329-exon-sc0000001-1491911889:1320878..1321675 | TCONS_00000329-exon-sc0000001-1491911889:1320878..1321675 | Clytia hemisphaerica | exon |
| TCONS_00000329-exon-sc0000001-1510915933:1320878..1321675 | TCONS_00000329-exon-sc0000001-1510915933:1320878..1321675 | Clytia hemisphaerica | exon |
| TCONS_00000329-exon-sc0000001-1575043694:1320878..1321675 | TCONS_00000329-exon-sc0000001-1575043694:1320878..1321675 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1320878..1321675 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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