TCONS_00000323 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000323
Unique NameTCONS_00000323
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000323 ID=TCONS_00000323|Name=TCONS_00000323|organism=Clytia hemisphaerica|type=transcript|length=380bp
CAAATTTCATAAGCATCAAATTGGTTCTCGTGTAAGATATAAGTAGGAGA
AACACGGAAAACTTTGGCAGAACAGCGACATAACCCATGATTTTCTCGCC
AGGTCCAGGTGACACACATTGGTTTCCTCATACAAGCATCAGCACATTCC
GTTTTAGAGGAGCCACCGAAATAACAATCGATATTTCTACCGAGTGTAGC
CCATACATTATATCCACGAGTTAATTTCTTGAATTGCATATACTGTGTAT
GTGTTTGTTGTCTGGTGATGTTTGTCGATTGCCACATATGTGTTTGGTTT
GATGCAAAGGTGTGAGCAAATGTTTGTATTAACTGTAAAACCGTAATAGC
GTGTAGGTTGAATGTTAGATACAACACCAT
Run BLAST on NCBI

protein sequence of TCONS_00000323-protein

>TCONS_00000323-protein ID=TCONS_00000323-protein|Name=TCONS_00000323-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MVLYLTFNLHAITVLQLIQTFAHTFASNQTHMWQSTNITRQQTHTQYMQF
KKLTRGYNVWATLGRNIDCYFGGSSKTECADACMRKPMCVTWTWRENHGL
CRCSAKVFRVSPTYILHENQFDAYEI
Run BLAST on NCBI

transcript from alignment at sc0000001:1185768..1186147

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000323 ID=TCONS_00000323|Name=TCONS_00000323|organism=Clytia hemisphaerica|type=transcript|length=380bp|location=Sequence derived from alignment at sc0000001:1185768..1186147 (Clytia hemisphaerica)
ATGGTGTTGTATCTAACATTCAACCTACACGCTATTACGGTTTTACAGTT
AATACAAACATTTGCTCACACCTTTGCATCAAACCAAACACATATGTGGC
AATCGACAAACATCACCAGACAACAAACACATACACAGTATATGCAATTC
AAGAAATTAACTCGTGGATATAATGTATGGGCTACACTCGGTAGAAATAT
CGATTGTTATTTCGGTGGCTCCTCTAAAACGGAATGTGCTGATGCTTGTA
TGAGGAAACCAATGTGTGTCACCTGGACCTGGCGAGAAAATCATGGGTTA
TGTCGCTGTTCTGCCAAAGTTTTCCGTGTTTCTCCTACTTATATCTTACA
CGAGAACCAATTTGATGCTTATGAAATTTG

Coding sequence (CDS) from alignment at sc0000001:1185768..1186147

>TCONS_00000323 ID=TCONS_00000323|Name=TCONS_00000323|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0000001:1185768..1186147 (Clytia hemisphaerica)
ATGGTGTTGTATCTAACATTCAACCTACACGCTATTACGGTTTTACAGTT
AATACAAACATTTGCTCACACCTTTGCATCAAACCAAACACATATGTGGC
AATCGACAAACATCACCAGACAACAAACACATACACAGTATATGCAATTC
AAGAAATTAACTCGTGGATATAATGTATGGGCTACACTCGGTAGAAATAT
CGATTGTTATTTCGGTGGCTCCTCTAAAACGGAATGTGCTGATGCTTGTA
TGAGGAAACCAATGTGTGTCACCTGGACCTGGCGAGAAAATCATGGGTTA
TGTCGCTGTTCTGCCAAAGTTTTCCGTGTTTCTCCTACTTATATCTTACA
CGAGAACCAATTTGATGCTTATGAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000197XLOC_000197Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000323-exon-sc0000001-1491911889:1185768..1186147TCONS_00000323-exon-sc0000001-1491911889:1185768..1186147Clytia hemisphaericaexon
TCONS_00000323-exon-sc0000001-1510915933:1185768..1186147TCONS_00000323-exon-sc0000001-1510915933:1185768..1186147Clytia hemisphaericaexon
TCONS_00000323-exon-sc0000001-1575043694:1185768..1186147TCONS_00000323-exon-sc0000001-1575043694:1185768..1186147Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000323-proteinTCONS_00000323-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1185768..1186147 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.559576	0	0.266738	0.249717	0.699331	1.08279	0.630591	0.967227	4.55345	3.29583	0.706857	0.379283	2.33623	1.43674	3.52876	6.23125	4.01192	3.8159	1.4273	1.94644	3.11855	2.38563	1.9914	0.303611	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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