TCONS_00000322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000322
Unique NameTCONS_00000322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000322 ID=TCONS_00000322|Name=TCONS_00000322|organism=Clytia hemisphaerica|type=transcript|length=400bp
cctggaagccacttaacccctctcaaatcgaaaaatccaatgaagcaaag
tggaactactgaaactgcaattcccgcccgacctttaaattctgaaaaac
gttaaaatacccaaaattcccaatatatttcggcgctgattgCAGATAGC
CCAAATAATCTTTGACTCAATTGTTTTCCACgtcagccggctcggctatc
tggGAAATGAacagaacattggaaggagcggggattggAACTGGGAACCT
TCTGGTTTTAAAATCCCTCATTTTTTAAAAGGAGAATGTCTTTTTCAGAG
CAAAGGTGAAATAAAAATCCATATGGAACACAAAAAATGTGTAAGTGCGT
GGTTGATATTCCAGACAAGCTTAGCCAGTTTCTAAAAAAACAACCCCTCA
Run BLAST on NCBI

transcript from alignment at sc0000001:1150483..1150882

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000322 ID=TCONS_00000322|Name=TCONS_00000322|organism=Clytia hemisphaerica|type=transcript|length=400bp|location=Sequence derived from alignment at sc0000001:1150483..1150882 (Clytia hemisphaerica)
TGAGGGGTTGTTTTTTTAGAAACTGGCTAAGCTTGTCTGGAATATCAACC
ACGCACTTACACATTTTTTGTGTTCCATATGGATTTTTATTTCACCTTTG
CTCTGAAAAAGACATTCTCCTTTTAAAAAATGAGGGATTTTAAAACCAGA
AGGTTCCCAGTTccaatccccgctccttccaatgttctgtTCATTTCcca
gatagccgagccggctgacGTGGAAAACAATTGAGTCAAAGATTATTTGG
GCTATCTGcaatcagcgccgaaatatattgggaattttgggtattttaac
gtttttcagaatttaaaggtcgggcgggaattgcagtttcagtagttcca
ctttgcttcattggatttttcgatttgagaggggttaagtggcttccagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000196XLOC_000196Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000322-exon-sc0000001-1491911889:1150483..1150882TCONS_00000322-exon-sc0000001-1491911889:1150483..1150882Clytia hemisphaericaexon
TCONS_00000322-exon-sc0000001-1510915933:1150483..1150882TCONS_00000322-exon-sc0000001-1510915933:1150483..1150882Clytia hemisphaericaexon
TCONS_00000322-exon-sc0000001-1575043694:1150483..1150882TCONS_00000322-exon-sc0000001-1575043694:1150483..1150882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1150483..1150882 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.185747	0.181133	1.47219	1.78682	0	0.197941	0	0.223569	0	0	0.188187	0.123707	0	0	0.105473	0.228689	0	0.285843	0.197454	0	0	0	0	0.194679	0	0	0.276599	0.271819	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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