TCONS_00000321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000321
Unique NameTCONS_00000321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000321 ID=TCONS_00000321|Name=TCONS_00000321|organism=Clytia hemisphaerica|type=transcript|length=449bp
ccattttcatcatagaCATTcctataaagtgtattcttataaaaaaaagc
atgtacATATCTTTTTATCCTGGAACAAAAATTAACATTGCCAAAACCCG
ATAACTTGGAGAGGCAGGGGAATGGCTATAcatcttttttatgagaacaa
ttcAAGAACAATCCCAAGTCTTGAATTGCTTGACTTTGCGCAAACTTAGG
GTCAAATCAGTAAAAATAGAGTATGAGGCCCAAAAAAGCTCAATACTATC
CTATAAGTTAACTTGTGAATAAGTAAAGGCTAATAGCGAGAAAAGAAAAT
AAGAGCAGTCGAGCCTTAACTAAAATTAACTGGTTGAGAtggaaatgggc
ttttccagaaatagtccgtgcccctcCCCCCGTAAAAACCATATCTAGGG
gataagcatctttataagagaggatatccaggcgGTTGAGCATATCTTT
Run BLAST on NCBI

transcript from alignment at sc0000001:1149765..1150213

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000321 ID=TCONS_00000321|Name=TCONS_00000321|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at sc0000001:1149765..1150213 (Clytia hemisphaerica)
AAAGATATGCTCAACcgcctggatatcctctcttataaagatgcttatcC
CCTAGATATGGTTTTTACGGGGGgaggggcacggactatttctggaaaag
cccatttccaTCTCAACCAGTTAATTTTAGTTAAGGCTCGACTGCTCTTA
TTTTCTTTTCTCGCTATTAGCCTTTACTTATTCACAAGTTAACTTATAGG
ATAGTATTGAGCTTTTTTGGGCCTCATACTCTATTTTTACTGATTTGACC
CTAAGTTTGCGCAAAGTCAAGCAATTCAAGACTTGGGATTGTTCTTgaat
tgttctcataaaaaagatgTATAGCCATTCCCCTGCCTCTCCAAGTTATC
GGGTTTTGGCAATGTTAATTTTTGTTCCAGGATAAAAAGATATgtacatg
cttttttttataagaatacactttataggAATGtctatgatgaaaatgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000195XLOC_000195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000321-exon-sc0000001-1491911889:1149765..1150213TCONS_00000321-exon-sc0000001-1491911889:1149765..1150213Clytia hemisphaericaexon
TCONS_00000321-exon-sc0000001-1510915933:1149765..1150213TCONS_00000321-exon-sc0000001-1510915933:1149765..1150213Clytia hemisphaericaexon
TCONS_00000321-exon-sc0000001-1575043694:1149765..1150213TCONS_00000321-exon-sc0000001-1575043694:1149765..1150213Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1149765..1150213 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.443472	0.288303	0.502121	2.94748	0.199349	0	0.190051	0.177923	0.124568	0	0	0	0	0	0	0.180159	0	0.341225	0	0	0	0	0	0	0	0.141647	0	0.216323	0	0.334329
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top