Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000319 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000319
Unique NameTCONS_00000319
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1050

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000319 ID=TCONS_00000319|Name=TCONS_00000319|organism=Clytia hemisphaerica|type=transcript|length=1050bp
taagtttagactaaCTGTCAGACAGCAAACAATTGTAGTTTTGCTCAAGA
GACTTTTAGTTAATACTTGGAGAATGGTTacacaaaatctttcaatcttT
GTACATATCAATCCATGccatatcaattttttttgtacgTAGCTAGGTGG
ATATACTGCGATAGCGATAGATGTTCTTTCGGTTGAATTAAGAATTTTAC
GCCCACCAAATCTGCTAATTGTAAAGTCATGGTATACTTGCTCTGGAAAT
TACTACATTGGTTAGGTTGCCATCATATGTAGTGCAGTGTAGTGAGTGGT
CTTTGGTTGGGACATACTGTATTTGTTATCACAGATATTGAAACCTTCTT
CGTTCCTCTTTCTTGTGGAAAACCAACATCACATCTTCCAAATGTTTACC
TCAAGAGCGattcaaaaaagtttgttttcaaCAGCTTCCCAAAGTTTGGT
AATTTGAATGGAATAATGTCAATGAAGAAccataaatttaaatttgaaga
aTCATTCATTCTGAAGATGCACTCAAACTTTCAACGAGGCTTCCAATTAT
CTCCGTTATTTAAAAACTTCATGAAACAGGTACGCTAATTACTACGGAGC
TAACAAGAATGTAAGGCAAATGCTACATGATAAGATTGCGTGGCGTAATA
TAAGGGAGATAATAGAACTGATGCAAGAATTGACGCGGGAAATAATTTCC
CGATTCCCCGAACATTTGATTCCGAATCGTGTGACTAAACTTGCACTTTT
TTGTCTTAAGGACGAGGAAAAGCACCGAGATTAATGGTCTCCTTCCACTT
AGCGTGGGGCGACCAACAACCAAAACTGAGCCCAAGAATTTTGCACGAAG
AGAACCATGAAGAAAAGCAACATACACAAAGAAGAGACTcatcaaataag
aaaaaagaaacaaaacatcttttcaaataaaaatttccactaGAAGTCAG
CCATTTTTCTTCCAATCACTCACTCCTCCAAATTCAAAATAACAAGATCA
GCGACTTTGACGGAAGTTTCCATTTCTCATTTCAGGAATCTCCCCCAAAG
Run BLAST on NCBI

transcript from alignment at sc0000001:1118914..1119963

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000319 ID=TCONS_00000319|Name=TCONS_00000319|organism=Clytia hemisphaerica|type=transcript|length=1050bp|location=Sequence derived from alignment at sc0000001:1118914..1119963 (Clytia hemisphaerica)
CTTTGGGGGAGATTCCTGAAATGAGAAATGGAAACTTCCGTCAAAGTCGC TGATCTTGTTATTTTGAATTTGGAGGAGTGAGTGATTGGAAGAAAAATGG CTGACTTCtagtggaaatttttatttgaaaagatgttttgtttctttttt cttatttgatgAGTCTCTTCTTTGTGTATGTTGCTTTTCTTCATGGTTCT CTTCGTGCAAAATTCTTGGGCTCAGTTTTGGTTGTTGGTCGCCCCACGCT AAGTGGAAGGAGACCATTAATCTCGGTGCTTTTCCTCGTCCTTAAGACAA AAAAGTGCAAGTTTAGTCACACGATTCGGAATCAAATGTTCGGGGAATCG GGAAATTATTTCCCGCGTCAATTCTTGCATCAGTTCTATTATCTCCCTTA TATTACGCCACGCAATCTTATCATGTAGCATTTGCCTTACATTCTTGTTA GCTCCGTAGTAATTAGCGTACCTGTTTCATGAAGTTTTTAAATAACGGAG ATAATTGGAAGCCTCGTTGAAAGTTTGAGTGCATCTTCAGAATGAATGAt tcttcaaatttaaatttatggTTCTTCATTGACATTATTCCATTCAAATT ACCAAACTTTGGGAAGCTGttgaaaacaaacttttttgaatCGCTCTTGA GGTAAACATTTGGAAGATGTGATGTTGGTTTTCCACAAGAAAGAGGAACG AAGAAGGTTTCAATATCTGTGATAACAAATACAGTATGTCCCAACCAAAG ACCACTCACTACACTGCACTACATATGATGGCAACCTAACCAATGTAGTA ATTTCCAGAGCAAGTATACCATGACTTTACAATTAGCAGATTTGGTGGGC GTAAAATTCTTAATTCAACCGAAAGAACATCTATCGCTATCGCAGTATAT CCACCTAGCTAcgtacaaaaaaaattgatatggCATGGATTGATATGTAC AaagattgaaagattttgtgtAACCATTCTCCAAGTATTAACTAAAAGTC TCTTGAGCAAAACTACAATTGTTTGCTGTCTGACAGttagtctaaactta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000193XLOC_000193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000319-exon-sc0000001-1491911889:1118914..1119963TCONS_00000319-exon-sc0000001-1491911889:1118914..1119963Clytia hemisphaericaexon
TCONS_00000319-exon-sc0000001-1510915933:1118914..1119963TCONS_00000319-exon-sc0000001-1510915933:1118914..1119963Clytia hemisphaericaexon
TCONS_00000319-exon-sc0000001-1575043694:1118914..1119963TCONS_00000319-exon-sc0000001-1575043694:1118914..1119963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1118914..1119963 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.253111 0.205686 0.435549 0.560758 0.114169 0.269727 0.542357 0.612227 0.071577 0.396295 0.0427392 0.255553 0.39409 0.320501 0.215587 0.282771 0 0.194754 0.224219 0.281555 0.326296 0.358101 0.241844 0.222099 0.690379 0.659594 0.175706 0.308665 0.236093 0.288993
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top