TCONS_00000312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000312
Unique NameTCONS_00000312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length830

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000312 ID=TCONS_00000312|Name=TCONS_00000312|organism=Clytia hemisphaerica|type=transcript|length=830bp
GTTGTAGAGTTGGTTGGGTATGACTTTGGTGTTGTTGCAAGTTTTTGTTG
TTGTGTTGAAACAGTACTTTGTTGTGGGTTTGTTGTATCTGCTTGAAGTG
TGTCGTCAAGTGTTGTAGGTGGTTGTGGAGTTGTCTGGTCAATTTGTTGT
AGAAAAGTAATAATGGTTTCGTTGGTCGCGGTAGATATTGGTTGTTGTAC
TTCAGGTTGTGGAAAAGTGTTGTCATCAATTTGTTGTGATGTATTGTCAA
TTGTGAGGGTCTCCTTATATTGTTGATTTTGGTTATGTGCAGTATCCTTG
GATGTTGTAGAGGATTGTTGAGTAGGGTTGTCTTGTTGTGGTTCTACAGA
CTGTAGGGAAGTGTTGTCTACctcttgttttgatgttttatcTGTTTTGA
GATTGTCTTTCTGTTGAAGTTTGTTGTCATCATCTTTTGTGTCTTCTATA
AAGTTGGTGATCATTTCTGGTTGTTCAAGCTGCTTGCTGGTCAATGTCTT
GAACTGGTTTTGAAGGTCATTTAACGTACTCAGGATTTTCATATTAACTG
GATTTGTTCGATTCAATGAATTCGCAttgatttcattctttttgacAATG
GGAGAACCTCCAATATCACTGTAAGGATCTGTCATATTGTGTGCTTGGTT
TAACTTTTCTTTAAGGTTCAACTCGCTGacgtttttcttgatttcttgca
tcttttccaccatttttaacAAGAAATCGTCACGAATGTCGTCATCTTTA
TCGATCATAGCCTTAGATTCCAGTCTTTCTGCTTTCTCTTGGATCGCTGC
AACAGTGCCATTGATATTCCAACTGTTCAG
Run BLAST on NCBI

protein sequence of TCONS_00000312-protein

>TCONS_00000312-protein ID=TCONS_00000312-protein|Name=TCONS_00000312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
LNSWNINGTVAAIQEKAERLESKAMIDKDDDIRDDFLLKMVEKMQEIKKN
VSELNLKEKLNQAHNMTDPYSDIGGSPIVKKNEINANSLNRTNPVNMKIL
STLNDLQNQFKTLTSKQLEQPEMITNFIEDTKDDDNKLQQKDNLKTDKTS
KQEVDNTSLQSVEPQQDNPTQQSSTTSKDTAHNQNQQYKETLTIDNTSQQ
IDDNTFPQPEVQQPISTATNETIITFLQQIDQTTPQPPTTLDDTLQADTT
NPQQSTVSTQQQKLATTPKSYPTNST
Run BLAST on NCBI

transcript from alignment at sc0000001:1040619..1041448

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000312 ID=TCONS_00000312|Name=TCONS_00000312|organism=Clytia hemisphaerica|type=transcript|length=830bp|location=Sequence derived from alignment at sc0000001:1040619..1041448 (Clytia hemisphaerica)
CTGAACAGTTGGAATATCAATGGCACTGTTGCAGCGATCCAAGAGAAAGC
AGAAAGACTGGAATCTAAGGCTATGATCGATAAAGATGACGACATTCGTG
ACGATTTCTTgttaaaaatggtggaaaagatgcaagaaatcaagaaaaac
gtCAGCGAGTTGAACCTTAAAGAAAAGTTAAACCAAGCACACAATATGAC
AGATCCTTACAGTGATATTGGAGGTTCTCCCATTgtcaaaaagaatgaaa
tcaaTGCGAATTCATTGAATCGAACAAATCCAGTTAATATGAAAATCCTG
AGTACGTTAAATGACCTTCAAAACCAGTTCAAGACATTGACCAGCAAGCA
GCTTGAACAACCAGAAATGATCACCAACTTTATAGAAGACACAAAAGATG
ATGACAACAAACTTCAACAGAAAGACAATCTCAAAACAgataaaacatca
aaacaagagGTAGACAACACTTCCCTACAGTCTGTAGAACCACAACAAGA
CAACCCTACTCAACAATCCTCTACAACATCCAAGGATACTGCACATAACC
AAAATCAACAATATAAGGAGACCCTCACAATTGACAATACATCACAACAA
ATTGATGACAACACTTTTCCACAACCTGAAGTACAACAACCAATATCTAC
CGCGACCAACGAAACCATTATTACTTTTCTACAACAAATTGACCAGACAA
CTCCACAACCACCTACAACACTTGACGACACACTTCAAGCAGATACAACA
AACCCACAACAAAGTACTGTTTCAACACAACAACAAAAACTTGCAACAAC
ACCAAAGTCATACCCAACCAACTCTACAAC

Coding sequence (CDS) from alignment at sc0000001:1040619..1041448

>TCONS_00000312 ID=TCONS_00000312|Name=TCONS_00000312|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at sc0000001:1040619..1041448 (Clytia hemisphaerica)
CTGAACAGTTGGAATATCAATGGCACTGTTGCAGCGATCCAAGAGAAAGC
AGAAAGACTGGAATCTAAGGCTATGATCGATAAAGATGACGACATTCGTG
ACGATTTCTTgttaaaaatggtggaaaagatgcaagaaatcaagaaaaac
gtCAGCGAGTTGAACCTTAAAGAAAAGTTAAACCAAGCACACAATATGAC
AGATCCTTACAGTGATATTGGAGGTTCTCCCATTgtcaaaaagaatgaaa
tcaaTGCGAATTCATTGAATCGAACAAATCCAGTTAATATGAAAATCCTG
AGTACGTTAAATGACCTTCAAAACCAGTTCAAGACATTGACCAGCAAGCA
GCTTGAACAACCAGAAATGATCACCAACTTTATAGAAGACACAAAAGATG
ATGACAACAAACTTCAACAGAAAGACAATCTCAAAACAgataaaacatca
aaacaagagGTAGACAACACTTCCCTACAGTCTGTAGAACCACAACAAGA
CAACCCTACTCAACAATCCTCTACAACATCCAAGGATACTGCACATAACC
AAAATCAACAATATAAGGAGACCCTCACAATTGACAATACATCACAACAA
ATTGATGACAACACTTTTCCACAACCTGAAGTACAACAACCAATATCTAC
CGCGACCAACGAAACCATTATTACTTTTCTACAACAAATTGACCAGACAA
CTCCACAACCACCTACAACACTTGACGACACACTTCAAGCAGATACAACA
AACCCACAACAAAGTACTGTTTCAACACAACAACAAAAACTTGCAACAAC
ACCAAAGTCATACCCAACCAACTCTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000186XLOC_000186Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000312-exon-sc0000001-1491911889:1040619..1041448TCONS_00000312-exon-sc0000001-1491911889:1040619..1041448Clytia hemisphaericaexon
TCONS_00000312-exon-sc0000001-1510915933:1040619..1041448TCONS_00000312-exon-sc0000001-1510915933:1040619..1041448Clytia hemisphaericaexon
TCONS_00000312-exon-sc0000001-1575043694:1040619..1041448TCONS_00000312-exon-sc0000001-1575043694:1040619..1041448Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000312-proteinTCONS_00000312-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1040619..1041448 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.077043	0	0.146899	0.137525	0.0481424	0.119264	0	0.114145	0.151982	0.157834	0	0.278507	0.128662	0.0879162	0	0.0635501	0.331419	0.161655	0.196512	0.0595528	0.92007	0.766397	0.0783366	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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