TCONS_00000310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000310
Unique NameTCONS_00000310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000310 ID=TCONS_00000310|Name=TCONS_00000310|organism=Clytia hemisphaerica|type=transcript|length=455bp
TATCAGAGACATCTGTCCAGGTCCGTCATTTGTAGTTTGATTGGCAACTT
GTTGGTGACTCTTCActttttggaaatcgttttgAAGTGGAAGACCAAAA
GATTTGTTCATTGTCTCGTGTTTGCTGTTTTTGATTGTTAAGTTATTTTT
AAACGGTAAGCCGCTAGCAGTATTTGAATAatctttgttactttttttgt
tgttgtttaaaAGCTCCAAAATATGTTCTGGCGTTAGACCTTCTAGGCCG
TACTGGGTCATTTGGTCAGCTGAAGTATTCCCAATTTTCAAATCCAGTTT
AGGAGCTGTCTTTGAGTTTTCAACCTTCAGATCATTGTGACTTTCCTCTG
ACATTTCTAAAGAACTGTTCACCACGCTTGTATTTGATTTGTTTGTGTTA
TTTTGAGTTTTCTTATCAACTTTCATCACTGGTTGATCGATCTCTATTGA
CTTCA
Run BLAST on NCBI

protein sequence of TCONS_00000310-protein

>TCONS_00000310-protein ID=TCONS_00000310-protein|Name=TCONS_00000310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
KSIEIDQPVMKVDKKTQNNTNKSNTSVVNSSLEMSEESHNDLKVENSKTA
PKLDLKIGNTSADQMTQYGLEGLTPEHILELLNNNKKSNKDYSNTASGLP
FKNNLTIKNSKHETMNKSFGLPLQNDFQKVKSHQQVANQTTNDGPGQMSL
I
Run BLAST on NCBI

transcript from alignment at sc0000001:1033529..1033983

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000310 ID=TCONS_00000310|Name=TCONS_00000310|organism=Clytia hemisphaerica|type=transcript|length=455bp|location=Sequence derived from alignment at sc0000001:1033529..1033983 (Clytia hemisphaerica)
TGAAGTCAATAGAGATCGATCAACCAGTGATGAAAGTTGATAAGAAAACT
CAAAATAACACAAACAAATCAAATACAAGCGTGGTGAACAGTTCTTTAGA
AATGTCAGAGGAAAGTCACAATGATCTGAAGGTTGAAAACTCAAAGACAG
CTCCTAAACTGGATTTGAAAATTGGGAATACTTCAGCTGACCAAATGACC
CAGTACGGCCTAGAAGGTCTAACGCCAGAACATATTTTGGAGCTtttaaa
caacaacaaaaaaagtaacaaagatTATTCAAATACTGCTAGCGGCTTAC
CGTTTAAAAATAACTTAACAATCAAAAACAGCAAACACGAGACAATGAAC
AAATCTTTTGGTCTTCCACTTcaaaacgatttccaaaaagTGAAGAGTCA
CCAACAAGTTGCCAATCAAACTACAAATGACGGACCTGGACAGATGTCTC
TGATA

Coding sequence (CDS) from alignment at sc0000001:1033529..1033983

>TCONS_00000310 ID=TCONS_00000310|Name=TCONS_00000310|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0000001:1033529..1033983 (Clytia hemisphaerica)
AAGTCAATAGAGATCGATCAACCAGTGATGAAAGTTGATAAGAAAACTCA
AAATAACACAAACAAATCAAATACAAGCGTGGTGAACAGTTCTTTAGAAA
TGTCAGAGGAAAGTCACAATGATCTGAAGGTTGAAAACTCAAAGACAGCT
CCTAAACTGGATTTGAAAATTGGGAATACTTCAGCTGACCAAATGACCCA
GTACGGCCTAGAAGGTCTAACGCCAGAACATATTTTGGAGCTtttaaaca
acaacaaaaaaagtaacaaagatTATTCAAATACTGCTAGCGGCTTACCG
TTTAAAAATAACTTAACAATCAAAAACAGCAAACACGAGACAATGAACAA
ATCTTTTGGTCTTCCACTTcaaaacgatttccaaaaagTGAAGAGTCACC
AACAAGTTGCCAATCAAACTACAAATGACGGACCTGGACAGATGTCTCTG
ATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000184XLOC_000184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000310-exon-sc0000001-1491911889:1033529..1033983TCONS_00000310-exon-sc0000001-1491911889:1033529..1033983Clytia hemisphaericaexon
TCONS_00000310-exon-sc0000001-1510915933:1033529..1033983TCONS_00000310-exon-sc0000001-1510915933:1033529..1033983Clytia hemisphaericaexon
TCONS_00000310-exon-sc0000001-1575043694:1033529..1033983TCONS_00000310-exon-sc0000001-1575043694:1033529..1033983Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000310-proteinTCONS_00000310-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1033529..1033983 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.173584	0.12153	0	0	0.0960487	0.287746	0	0.163784	0	0.324793	0.110967	0	0	0.278877	0.20404	0	0.150334	0.774205	0.829151	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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