TCONS_00000309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000309
Unique NameTCONS_00000309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000309 ID=TCONS_00000309|Name=TCONS_00000309|organism=Clytia hemisphaerica|type=transcript|length=459bp
GGATGCAGGTGTCTAGATCTGGTACTAAACCGTGCTGCACATAAATACCA
GCATGGAATCCTCCCTTAACAGTCATACCATACTCGACATCTGAGTGCTG
GCAAATGGATACTGTATCCCTGGAATCGGTTGCACCCAACCCTTTTTTGC
CATTGCCACTGAATCTGGACAATCCATTATCATCGGAATAAAGACCTCCT
GGCTCTCTAGTGTCTTCGGAATCGGCCATCGGGGGTCCTTGACGTACATC
TGAAATGAAAGTCACAGCTTCGCTATTTGCTTCTGATTCTATCAACTGAC
ACGTGTACTGGTTAAAGCAGATGATACTGTAACATTTATTATTGATGGTC
ATGGCTAAATCACAAGATCGATTCTGACAACAATACTCAATACATTCTTC
GAACCTCATAACAGGACCTTTATCTATGAAAACACCAGCCTCACTACCAC
CTTTAAGAG
Run BLAST on NCBI

protein sequence of TCONS_00000309-protein

>TCONS_00000309-protein ID=TCONS_00000309-protein|Name=TCONS_00000309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
LKGGSEAGVFIDKGPVMRFEECIEYCCQNRSCDLAMTINNKCYSIICFNQ
YTCQLIESEANSEAVTFISDVRQGPPMADSEDTREPGGLYSDDNGLSRFS
GNGKKGLGATDSRDTVSICQHSDVEYGMTVKGGFHAGIYVQHGLVPDLDT
CI
Run BLAST on NCBI

transcript from alignment at sc0000001:1032564..1033022

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000309 ID=TCONS_00000309|Name=TCONS_00000309|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at sc0000001:1032564..1033022 (Clytia hemisphaerica)
CTCTTAAAGGTGGTAGTGAGGCTGGTGTTTTCATAGATAAAGGTCCTGTT
ATGAGGTTCGAAGAATGTATTGAGTATTGTTGTCAGAATCGATCTTGTGA
TTTAGCCATGACCATCAATAATAAATGTTACAGTATCATCTGCTTTAACC
AGTACACGTGTCAGTTGATAGAATCAGAAGCAAATAGCGAAGCTGTGACT
TTCATTTCAGATGTACGTCAAGGACCCCCGATGGCCGATTCCGAAGACAC
TAGAGAGCCAGGAGGTCTTTATTCCGATGATAATGGATTGTCCAGATTCA
GTGGCAATGGCAAAAAAGGGTTGGGTGCAACCGATTCCAGGGATACAGTA
TCCATTTGCCAGCACTCAGATGTCGAGTATGGTATGACTGTTAAGGGAGG
ATTCCATGCTGGTATTTATGTGCAGCACGGTTTAGTACCAGATCTAGACA
CCTGCATCC

Coding sequence (CDS) from alignment at sc0000001:1032564..1033022

>TCONS_00000309 ID=TCONS_00000309|Name=TCONS_00000309|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0000001:1032564..1033022 (Clytia hemisphaerica)
CTTAAAGGTGGTAGTGAGGCTGGTGTTTTCATAGATAAAGGTCCTGTTAT
GAGGTTCGAAGAATGTATTGAGTATTGTTGTCAGAATCGATCTTGTGATT
TAGCCATGACCATCAATAATAAATGTTACAGTATCATCTGCTTTAACCAG
TACACGTGTCAGTTGATAGAATCAGAAGCAAATAGCGAAGCTGTGACTTT
CATTTCAGATGTACGTCAAGGACCCCCGATGGCCGATTCCGAAGACACTA
GAGAGCCAGGAGGTCTTTATTCCGATGATAATGGATTGTCCAGATTCAGT
GGCAATGGCAAAAAAGGGTTGGGTGCAACCGATTCCAGGGATACAGTATC
CATTTGCCAGCACTCAGATGTCGAGTATGGTATGACTGTTAAGGGAGGAT
TCCATGCTGGTATTTATGTGCAGCACGGTTTAGTACCAGATCTAGACACC
TGCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000183XLOC_000183Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000309-proteinTCONS_00000309-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000309-exon-sc0000001-1491911889:1032564..1033022TCONS_00000309-exon-sc0000001-1491911889:1032564..1033022Clytia hemisphaericaexon
TCONS_00000309-exon-sc0000001-1510915933:1032564..1033022TCONS_00000309-exon-sc0000001-1510915933:1032564..1033022Clytia hemisphaericaexon
TCONS_00000309-exon-sc0000001-1575043694:1032564..1033022TCONS_00000309-exon-sc0000001-1575043694:1032564..1033022Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1032564..1033022 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141911	0	0	0	0.38275	0	0.364898	0.170806	0	0.148126	1.00642	0	0.283142	0	0	0.0864765	0	0.109192	0	0	0	0	0	0	0.304727	0.407942	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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