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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000307 ID=TCONS_00000307|Name=TCONS_00000307|organism=Clytia hemisphaerica|type=transcript|length=1214bp
GGTTAGCAAGTTGATTAACAAGATTGTTggctttttgagatttttctacA
TCAGATCCTCCGATAGATGGCTTCGGATAAGCTGTCGTTCTAACCGGTTT
GTTTTCCTGCCTTCTTTTTGGTGAAATGTGTTTTACTCCAGAGCTGATTT
TATTGCCGGATTTCCCGATTGGTTTTTGAAGATGTTCTTTCATGCTTGGG
GTTGTTCCAAGAGAGCCTACAGTTGGTAATTTACGACTCTGTTGTGCCAA
TTTCTTGTAGGTTGATCGTAATGGTGTAATGGTATTTTGAGCTTTTTGGC
TAGTTGGTTTTATTGTGTTACCTTGCTTGGCTGGTAAATCGCTCCATGAA
TTTCCCATGATAATATGGTAAGCCCTAGCTTCGGATTGACCCGGGGCTTG
TTGAAATTGGTTCGGCGTGTcgtaatgtttttgaatgttttttgtaTGAC
TTGTGTGTTTCTGTGGGAAGCGCCTGGGTTTGTTCTTCGAATTTTCGTTC
TTGAACTTCGATGATTTCTTTTTGTGATCCTTATTTTCCTTCTGCAAACC
ATCTCGAGCGTTTAATAGGGCACCCAAGAAATTTTCCGCCGTTTTCATTT
GTGACAATTCTCCCCTTGCTTGTTTCACCTGTTTAGAGTCATCGCTCCTC
ACCTTCAACTCGTCTTCTCCTGCTTCGATTTTCTTCTCGAGTAAACTTAC
CTGGTTGTCATTTCccttcttaacatttttgggATGGTTTCCATTTGCGT
CTTCTTTAATTCTCTCCAACATTTTATTCAACTTTCGTTGATGCAAATGT
AATAAGCTTTTCAATTGTTGTATTTTCTTGCCATCGTCTGTTTTGCTTTT
ATCAATGACTCCCTCCGCTTCTCGAGCTTTCGTAGGAGCTGTGCTGCGCT
CAGGTAGTATTTTCCCTTGTTTTACCAAAATGTTTTTGAGTTTCGTTTTG
TGTTCTTTCAGGAGCTTGTGTAGTGCTTTCAACTTGGGTTGATTTTCTAT
TTCTTGTGAATTATGATTCTCGTCTGTGAGAAGTTTCCTCAATGTCTCTT
TATGTTTCCACAACTGGTTTTTAAGTTGCCTAAGATGGCTGTCAGTGTCG
TGTCTTTTGATTGGTTcgttttgatcacgtgacaCTCCATCAAGCGCTTT
CATTGGTTGTCGAGGAGCTTTTATTGACGTAGGCTTTCGTAATGGTTTGT
ATGATGTTTGATGA Run BLAST on NCBI protein sequence of TCONS_00000307-protein >TCONS_00000307-protein ID=TCONS_00000307-protein|Name=TCONS_00000307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
HQTSYKPLRKPTSIKAPRQPMKALDGVSRDQNEPIKRHDTDSHLRQLKNQ
LWKHKETLRKLLTDENHNSQEIENQPKLKALHKLLKEHKTKLKNILVKQG
KILPERSTAPTKAREAEGVIDKSKTDDGKKIQQLKSLLHLHQRKLNKMLE
RIKEDANGNHPKNVKKGNDNQVSLLEKKIEAGEDELKVRSDDSKQVKQAR
GELSQMKTAENFLGALLNARDGLQKENKDHKKKSSKFKNENSKNKPRRFP
QKHTSHTKNIQKHYDTPNQFQQAPGQSEARAYHIIMGNSWSDLPAKQGNT
IKPTSQKAQNTITPLRSTYKKLAQQSRKLPTVGSLGTTPSMKEHLQKPIG
KSGNKISSGVKHISPKRRQENKPVRTTAYPKPSIGGSDVEKSQKANNLVN
QLAN Run BLAST on NCBI transcript from alignment at sc0000001:1025473..1026686 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000307 ID=TCONS_00000307|Name=TCONS_00000307|organism=Clytia hemisphaerica|type=transcript|length=1214bp|location=Sequence derived from alignment at sc0000001:1025473..1026686 (Clytia hemisphaerica)
TCATCAAACATCATACAAACCATTACGAAAGCCTACGTCAATAAAAGCTC
CTCGACAACCAATGAAAGCGCTTGATGGAGtgtcacgtgatcaaaacgAA
CCAATCAAAAGACACGACACTGACAGCCATCTTAGGCAACTTAAAAACCA
GTTGTGGAAACATAAAGAGACATTGAGGAAACTTCTCACAGACGAGAATC
ATAATTCACAAGAAATAGAAAATCAACCCAAGTTGAAAGCACTACACAAG
CTCCTGAAAGAACACAAAACGAAACTCAAAAACATTTTGGTAAAACAAGG
GAAAATACTACCTGAGCGCAGCACAGCTCCTACGAAAGCTCGAGAAGCGG
AGGGAGTCATTGATAAAAGCAAAACAGACGATGGCAAGAAAATACAACAA
TTGAAAAGCTTATTACATTTGCATCAACGAAAGTTGAATAAAATGTTGGA
GAGAATTAAAGAAGACGCAAATGGAAACCATcccaaaaatgttaagaagg
GAAATGACAACCAGGTAAGTTTACTCGAGAAGAAAATCGAAGCAGGAGAA
GACGAGTTGAAGGTGAGGAGCGATGACTCTAAACAGGTGAAACAAGCAAG
GGGAGAATTGTCACAAATGAAAACGGCGGAAAATTTCTTGGGTGCCCTAT
TAAACGCTCGAGATGGTTTGCAGAAGGAAAATAAGGATCACAAAAAGAAA
TCATCGAAGTTCAAGAACGAAAATTCGAAGAACAAACCCAGGCGCTTCCC
ACAGAAACACACAAGTCAtacaaaaaacattcaaaaacattacgACACGC
CGAACCAATTTCAACAAGCCCCGGGTCAATCCGAAGCTAGGGCTTACCAT
ATTATCATGGGAAATTCATGGAGCGATTTACCAGCCAAGCAAGGTAACAC
AATAAAACCAACTAGCCAAAAAGCTCAAAATACCATTACACCATTACGAT
CAACCTACAAGAAATTGGCACAACAGAGTCGTAAATTACCAACTGTAGGC
TCTCTTGGAACAACCCCAAGCATGAAAGAACATCTTCAAAAACCAATCGG
GAAATCCGGCAATAAAATCAGCTCTGGAGTAAAACACATTTCACCAAAAA
GAAGGCAGGAAAACAAACCGGTTAGAACGACAGCTTATCCGAAGCCATCT
ATCGGAGGATCTGATgtagaaaaatctcaaaaagccAACAATCTTGTTAA
TCAACTTGCTAACC Coding sequence (CDS) from alignment at sc0000001:1025473..1026686 >TCONS_00000307 ID=TCONS_00000307|Name=TCONS_00000307|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at sc0000001:1025473..1026686 (Clytia hemisphaerica)
CATCAAACATCATACAAACCATTACGAAAGCCTACGTCAATAAAAGCTCC
TCGACAACCAATGAAAGCGCTTGATGGAGtgtcacgtgatcaaaacgAAC
CAATCAAAAGACACGACACTGACAGCCATCTTAGGCAACTTAAAAACCAG
TTGTGGAAACATAAAGAGACATTGAGGAAACTTCTCACAGACGAGAATCA
TAATTCACAAGAAATAGAAAATCAACCCAAGTTGAAAGCACTACACAAGC
TCCTGAAAGAACACAAAACGAAACTCAAAAACATTTTGGTAAAACAAGGG
AAAATACTACCTGAGCGCAGCACAGCTCCTACGAAAGCTCGAGAAGCGGA
GGGAGTCATTGATAAAAGCAAAACAGACGATGGCAAGAAAATACAACAAT
TGAAAAGCTTATTACATTTGCATCAACGAAAGTTGAATAAAATGTTGGAG
AGAATTAAAGAAGACGCAAATGGAAACCATcccaaaaatgttaagaaggG
AAATGACAACCAGGTAAGTTTACTCGAGAAGAAAATCGAAGCAGGAGAAG
ACGAGTTGAAGGTGAGGAGCGATGACTCTAAACAGGTGAAACAAGCAAGG
GGAGAATTGTCACAAATGAAAACGGCGGAAAATTTCTTGGGTGCCCTATT
AAACGCTCGAGATGGTTTGCAGAAGGAAAATAAGGATCACAAAAAGAAAT
CATCGAAGTTCAAGAACGAAAATTCGAAGAACAAACCCAGGCGCTTCCCA
CAGAAACACACAAGTCAtacaaaaaacattcaaaaacattacgACACGCC
GAACCAATTTCAACAAGCCCCGGGTCAATCCGAAGCTAGGGCTTACCATA
TTATCATGGGAAATTCATGGAGCGATTTACCAGCCAAGCAAGGTAACACA
ATAAAACCAACTAGCCAAAAAGCTCAAAATACCATTACACCATTACGATC
AACCTACAAGAAATTGGCACAACAGAGTCGTAAATTACCAACTGTAGGCT
CTCTTGGAACAACCCCAAGCATGAAAGAACATCTTCAAAAACCAATCGGG
AAATCCGGCAATAAAATCAGCTCTGGAGTAAAACACATTTCACCAAAAAG
AAGGCAGGAAAACAAACCGGTTAGAACGACAGCTTATCCGAAGCCATCTA
TCGGAGGATCTGATgtagaaaaatctcaaaaagccAACAATCTTGTTAAT
CAACTTGCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000307-exon-sc0000001-1491911889:1025473..1026686 | TCONS_00000307-exon-sc0000001-1491911889:1025473..1026686 | Clytia hemisphaerica | exon |
| TCONS_00000307-exon-sc0000001-1510915933:1025473..1026686 | TCONS_00000307-exon-sc0000001-1510915933:1025473..1026686 | Clytia hemisphaerica | exon |
| TCONS_00000307-exon-sc0000001-1575043694:1025473..1026686 | TCONS_00000307-exon-sc0000001-1575043694:1025473..1026686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1025473..1026686 . |
Blast
The following BLAST results are available for this feature:
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