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TCONS_00000307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000307
Unique NameTCONS_00000307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1214

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000307 ID=TCONS_00000307|Name=TCONS_00000307|organism=Clytia hemisphaerica|type=transcript|length=1214bp
GGTTAGCAAGTTGATTAACAAGATTGTTggctttttgagatttttctacA
TCAGATCCTCCGATAGATGGCTTCGGATAAGCTGTCGTTCTAACCGGTTT
GTTTTCCTGCCTTCTTTTTGGTGAAATGTGTTTTACTCCAGAGCTGATTT
TATTGCCGGATTTCCCGATTGGTTTTTGAAGATGTTCTTTCATGCTTGGG
GTTGTTCCAAGAGAGCCTACAGTTGGTAATTTACGACTCTGTTGTGCCAA
TTTCTTGTAGGTTGATCGTAATGGTGTAATGGTATTTTGAGCTTTTTGGC
TAGTTGGTTTTATTGTGTTACCTTGCTTGGCTGGTAAATCGCTCCATGAA
TTTCCCATGATAATATGGTAAGCCCTAGCTTCGGATTGACCCGGGGCTTG
TTGAAATTGGTTCGGCGTGTcgtaatgtttttgaatgttttttgtaTGAC
TTGTGTGTTTCTGTGGGAAGCGCCTGGGTTTGTTCTTCGAATTTTCGTTC
TTGAACTTCGATGATTTCTTTTTGTGATCCTTATTTTCCTTCTGCAAACC
ATCTCGAGCGTTTAATAGGGCACCCAAGAAATTTTCCGCCGTTTTCATTT
GTGACAATTCTCCCCTTGCTTGTTTCACCTGTTTAGAGTCATCGCTCCTC
ACCTTCAACTCGTCTTCTCCTGCTTCGATTTTCTTCTCGAGTAAACTTAC
CTGGTTGTCATTTCccttcttaacatttttgggATGGTTTCCATTTGCGT
CTTCTTTAATTCTCTCCAACATTTTATTCAACTTTCGTTGATGCAAATGT
AATAAGCTTTTCAATTGTTGTATTTTCTTGCCATCGTCTGTTTTGCTTTT
ATCAATGACTCCCTCCGCTTCTCGAGCTTTCGTAGGAGCTGTGCTGCGCT
CAGGTAGTATTTTCCCTTGTTTTACCAAAATGTTTTTGAGTTTCGTTTTG
TGTTCTTTCAGGAGCTTGTGTAGTGCTTTCAACTTGGGTTGATTTTCTAT
TTCTTGTGAATTATGATTCTCGTCTGTGAGAAGTTTCCTCAATGTCTCTT
TATGTTTCCACAACTGGTTTTTAAGTTGCCTAAGATGGCTGTCAGTGTCG
TGTCTTTTGATTGGTTcgttttgatcacgtgacaCTCCATCAAGCGCTTT
CATTGGTTGTCGAGGAGCTTTTATTGACGTAGGCTTTCGTAATGGTTTGT
ATGATGTTTGATGA
Run BLAST on NCBI

protein sequence of TCONS_00000307-protein

>TCONS_00000307-protein ID=TCONS_00000307-protein|Name=TCONS_00000307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
HQTSYKPLRKPTSIKAPRQPMKALDGVSRDQNEPIKRHDTDSHLRQLKNQ
LWKHKETLRKLLTDENHNSQEIENQPKLKALHKLLKEHKTKLKNILVKQG
KILPERSTAPTKAREAEGVIDKSKTDDGKKIQQLKSLLHLHQRKLNKMLE
RIKEDANGNHPKNVKKGNDNQVSLLEKKIEAGEDELKVRSDDSKQVKQAR
GELSQMKTAENFLGALLNARDGLQKENKDHKKKSSKFKNENSKNKPRRFP
QKHTSHTKNIQKHYDTPNQFQQAPGQSEARAYHIIMGNSWSDLPAKQGNT
IKPTSQKAQNTITPLRSTYKKLAQQSRKLPTVGSLGTTPSMKEHLQKPIG
KSGNKISSGVKHISPKRRQENKPVRTTAYPKPSIGGSDVEKSQKANNLVN
QLAN
Run BLAST on NCBI

transcript from alignment at sc0000001:1025473..1026686

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000307 ID=TCONS_00000307|Name=TCONS_00000307|organism=Clytia hemisphaerica|type=transcript|length=1214bp|location=Sequence derived from alignment at sc0000001:1025473..1026686 (Clytia hemisphaerica)
TCATCAAACATCATACAAACCATTACGAAAGCCTACGTCAATAAAAGCTC CTCGACAACCAATGAAAGCGCTTGATGGAGtgtcacgtgatcaaaacgAA CCAATCAAAAGACACGACACTGACAGCCATCTTAGGCAACTTAAAAACCA GTTGTGGAAACATAAAGAGACATTGAGGAAACTTCTCACAGACGAGAATC ATAATTCACAAGAAATAGAAAATCAACCCAAGTTGAAAGCACTACACAAG CTCCTGAAAGAACACAAAACGAAACTCAAAAACATTTTGGTAAAACAAGG GAAAATACTACCTGAGCGCAGCACAGCTCCTACGAAAGCTCGAGAAGCGG AGGGAGTCATTGATAAAAGCAAAACAGACGATGGCAAGAAAATACAACAA TTGAAAAGCTTATTACATTTGCATCAACGAAAGTTGAATAAAATGTTGGA GAGAATTAAAGAAGACGCAAATGGAAACCATcccaaaaatgttaagaagg GAAATGACAACCAGGTAAGTTTACTCGAGAAGAAAATCGAAGCAGGAGAA GACGAGTTGAAGGTGAGGAGCGATGACTCTAAACAGGTGAAACAAGCAAG GGGAGAATTGTCACAAATGAAAACGGCGGAAAATTTCTTGGGTGCCCTAT TAAACGCTCGAGATGGTTTGCAGAAGGAAAATAAGGATCACAAAAAGAAA TCATCGAAGTTCAAGAACGAAAATTCGAAGAACAAACCCAGGCGCTTCCC ACAGAAACACACAAGTCAtacaaaaaacattcaaaaacattacgACACGC CGAACCAATTTCAACAAGCCCCGGGTCAATCCGAAGCTAGGGCTTACCAT ATTATCATGGGAAATTCATGGAGCGATTTACCAGCCAAGCAAGGTAACAC AATAAAACCAACTAGCCAAAAAGCTCAAAATACCATTACACCATTACGAT CAACCTACAAGAAATTGGCACAACAGAGTCGTAAATTACCAACTGTAGGC TCTCTTGGAACAACCCCAAGCATGAAAGAACATCTTCAAAAACCAATCGG GAAATCCGGCAATAAAATCAGCTCTGGAGTAAAACACATTTCACCAAAAA GAAGGCAGGAAAACAAACCGGTTAGAACGACAGCTTATCCGAAGCCATCT ATCGGAGGATCTGATgtagaaaaatctcaaaaagccAACAATCTTGTTAA TCAACTTGCTAACC

Coding sequence (CDS) from alignment at sc0000001:1025473..1026686

>TCONS_00000307 ID=TCONS_00000307|Name=TCONS_00000307|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at sc0000001:1025473..1026686 (Clytia hemisphaerica)
CATCAAACATCATACAAACCATTACGAAAGCCTACGTCAATAAAAGCTCC
TCGACAACCAATGAAAGCGCTTGATGGAGtgtcacgtgatcaaaacgAAC
CAATCAAAAGACACGACACTGACAGCCATCTTAGGCAACTTAAAAACCAG
TTGTGGAAACATAAAGAGACATTGAGGAAACTTCTCACAGACGAGAATCA
TAATTCACAAGAAATAGAAAATCAACCCAAGTTGAAAGCACTACACAAGC
TCCTGAAAGAACACAAAACGAAACTCAAAAACATTTTGGTAAAACAAGGG
AAAATACTACCTGAGCGCAGCACAGCTCCTACGAAAGCTCGAGAAGCGGA
GGGAGTCATTGATAAAAGCAAAACAGACGATGGCAAGAAAATACAACAAT
TGAAAAGCTTATTACATTTGCATCAACGAAAGTTGAATAAAATGTTGGAG
AGAATTAAAGAAGACGCAAATGGAAACCATcccaaaaatgttaagaaggG
AAATGACAACCAGGTAAGTTTACTCGAGAAGAAAATCGAAGCAGGAGAAG
ACGAGTTGAAGGTGAGGAGCGATGACTCTAAACAGGTGAAACAAGCAAGG
GGAGAATTGTCACAAATGAAAACGGCGGAAAATTTCTTGGGTGCCCTATT
AAACGCTCGAGATGGTTTGCAGAAGGAAAATAAGGATCACAAAAAGAAAT
CATCGAAGTTCAAGAACGAAAATTCGAAGAACAAACCCAGGCGCTTCCCA
CAGAAACACACAAGTCAtacaaaaaacattcaaaaacattacgACACGCC
GAACCAATTTCAACAAGCCCCGGGTCAATCCGAAGCTAGGGCTTACCATA
TTATCATGGGAAATTCATGGAGCGATTTACCAGCCAAGCAAGGTAACACA
ATAAAACCAACTAGCCAAAAAGCTCAAAATACCATTACACCATTACGATC
AACCTACAAGAAATTGGCACAACAGAGTCGTAAATTACCAACTGTAGGCT
CTCTTGGAACAACCCCAAGCATGAAAGAACATCTTCAAAAACCAATCGGG
AAATCCGGCAATAAAATCAGCTCTGGAGTAAAACACATTTCACCAAAAAG
AAGGCAGGAAAACAAACCGGTTAGAACGACAGCTTATCCGAAGCCATCTA
TCGGAGGATCTGATgtagaaaaatctcaaaaagccAACAATCTTGTTAAT
CAACTTGCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000181XLOC_000181Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000307-proteinTCONS_00000307-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000307-exon-sc0000001-1491911889:1025473..1026686TCONS_00000307-exon-sc0000001-1491911889:1025473..1026686Clytia hemisphaericaexon
TCONS_00000307-exon-sc0000001-1510915933:1025473..1026686TCONS_00000307-exon-sc0000001-1510915933:1025473..1026686Clytia hemisphaericaexon
TCONS_00000307-exon-sc0000001-1575043694:1025473..1026686TCONS_00000307-exon-sc0000001-1575043694:1025473..1026686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1025473..1026686 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0353012 0.103273 0 0 0.0476057 0.150475 0.0453853 0.169957 0.089243 0 0 0.0470209 0.0234777 0.0243819 0.0200452 0 0 0.0271622 0.150104 0.117805 0.136525 0.0998881 0 0.0735966 0.416915 0.676521 0.048405 0.103318 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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