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TCONS_00000303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000303
Unique NameTCONS_00000303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000303 ID=TCONS_00000303|Name=TCONS_00000303|organism=Clytia hemisphaerica|type=transcript|length=414bp
CGATCAGTATACACAAATCAACTAAGAGACTTAAAAGTCAGAAAACAAAT
TCAAGACAACCTTCACAGAGCCAACGAAAACTCAATACTCGAAACACTCG
CATCATAAAAATGCTTTTCGCTGTCGTATTAACTTTCGCGTTATGTTTCC
TACCAGTTTACGTTGTACAATTTTTCGCGTTTTTTCATCCGTATTTTATC
AGGTGTCAGTACTATATGCCACGTGTTGCTTATTTTATGGGATATTTGTT
TCAATATGCGAATAGCGCTATTAATCCGTTTTTATATTTCGGATTCAGTC
AATCTTATCGGAAAGCATTTAAAAAGACATTTCTAAAACGTTagaatttt
gaaacatttagAATTTATTATGAGATTATAATTTTTTGCAAGAATATTCC
AAACAATCGAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00000303-protein

>TCONS_00000303-protein ID=TCONS_00000303-protein|Name=TCONS_00000303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
ISIHKSTKRLKSQKTNSRQPSQSQRKLNTRNTRIIKMLFAVVLTFALCFL
PVYVVQFFAFFHPYFIRCQYYMPRVAYFMGYLFQYANSAINPFLYFGFSQ
SYRKAFKKTFLKR
Run BLAST on NCBI

transcript from alignment at sc0000001:963580..963993

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000303 ID=TCONS_00000303|Name=TCONS_00000303|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at sc0000001:963580..963993 (Clytia hemisphaerica)
CTTTTCGATTGTTTGGAATATTCTTGCAAAAAATTATAATCTCATAATAA ATTctaaatgtttcaaaattctAACGTTTTAGAAATGTCTTTTTAAATGC TTTCCGATAAGATTGACTGAATCCGAAATATAAAAACGGATTAATAGCGC TATTCGCATATTGAAACAAATATCCCATAAAATAAGCAACACGTGGCATA TAGTACTGACACCTGATAAAATACGGATGAAAAAACGCGAAAAATTGTAC AACGTAAACTGGTAGGAAACATAACGCGAAAGTTAATACGACAGCGAAAA GCATTTTTATGATGCGAGTGTTTCGAGTATTGAGTTTTCGTTGGCTCTGT GAAGGTTGTCTTGAATTTGTTTTCTGACTTTTAAGTCTCTTAGTTGATTT GTGTATACTGATCG

Coding sequence (CDS) from alignment at sc0000001:963580..963993

>TCONS_00000303 ID=TCONS_00000303|Name=TCONS_00000303|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0000001:963580..963993 (Clytia hemisphaerica)
ctAACGTTTTAGAAATGTCTTTTTAAATGCTTTCCGATAAGATTGACTGA
ATCCGAAATATAAAAACGGATTAATAGCGCTATTCGCATATTGAAACAAA
TATCCCATAAAATAAGCAACACGTGGCATATAGTACTGACACCTGATAAA
ATACGGATGAAAAAACGCGAAAAATTGTACAACGTAAACTGGTAGGAAAC
ATAACGCGAAAGTTAATACGACAGCGAAAAGCATTTTTATGATGCGAGTG
TTTCGAGTATTGAGTTTTCGTTGGCTCTGTGAAGGTTGTCTTGAATTTGT
TTTCTGACTTTTAAGTCTCTTAGTTGATTTGTGTATACTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000177XLOC_000177Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000303-proteinTCONS_00000303-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000303-exon-sc0000001-1491911889:963580..963993TCONS_00000303-exon-sc0000001-1491911889:963580..963993Clytia hemisphaericaexon
TCONS_00000303-exon-sc0000001-1510915933:963580..963993TCONS_00000303-exon-sc0000001-1510915933:963580..963993Clytia hemisphaericaexon
TCONS_00000303-exon-sc0000001-1575043694:963580..963993TCONS_00000303-exon-sc0000001-1575043694:963580..963993Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:963580..963993 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.3919 0 0.233384 0 0 0 0.145836 0 0.701341 0 0.805687 0.956245 0.196541 0 0 0.133161 2.57556 0.962551 0.334653 0.979391 0.992148 0.180401 0 0.497491 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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