TCONS_00000296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000296
Unique NameTCONS_00000296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000296 ID=TCONS_00000296|Name=TCONS_00000296|organism=Clytia hemisphaerica|type=transcript|length=509bp
atgaatgaataaaaaaaattcaacccgCGGCCAAATCTAAAAACTCTTCA
TTTTCGCATTACCGGGTGACGAAATAAAATCATGCGCAAGGcaagagaaa
attattttttttaattttgttctaaaatcgtATTTACGTATTATTTGGAc
tttattttctcaattttcagccttagaTGTTCTTCTTAATGTTCTTCTAT
ACATACGAGTCCAATTCTCTAGAGAACCGTAATAGCAGGCACGGAGCGTT
GTTTTAGCTCTTTCAATACCGCCAGAAAGAGAACATTTCCGGATTCTAGC
AATTGAGAAATGAGAAAGTTTGCGGGGCGTTTTCTTACTAATGAAAAGAC
TTGAAAACGTCGTTTTCGTTTTAATTAAAAGTAAGTTCTATTaactttca
agaaaatgcagtTTCAAAgcgattaaaaatttctttctatCAGAGGCTGG
AGAAAACGTCGTTCCAATAGGAACGATTttggctggaacggtatcaaaGG
AGTTAATGC
Run BLAST on NCBI

transcript from alignment at sc0000001:748314..748822

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000296 ID=TCONS_00000296|Name=TCONS_00000296|organism=Clytia hemisphaerica|type=transcript|length=509bp|location=Sequence derived from alignment at sc0000001:748314..748822 (Clytia hemisphaerica)
GCATTAACTCCtttgataccgttccagccaaAATCGTTCCTATTGGAACG
ACGTTTTCTCCAGCCTCTGatagaaagaaatttttaatcgcTTTGAAact
gcattttcttgaaagttAATAGAACTTACTTTTAATTAAAACGAAAACGA
CGTTTTCAAGTCTTTTCATTAGTAAGAAAACGCCCCGCAAACTTTCTCAT
TTCTCAATTGCTAGAATCCGGAAATGTTCTCTTTCTGGCGGTATTGAAAG
AGCTAAAACAACGCTCCGTGCCTGCTATTACGGTTCTCTAGAGAATTGGA
CTCGTATGTATAGAAGAACATTAAGAAGAACAtctaaggctgaaaattga
gaaaataaagTCCAAATAATACGTAAATacgattttagaacaaaattaaa
aaaaataattttctcttgCCTTGCGCATGATTTTATTTCGTCACCCGGTA
ATGCGAAAATGAAGAGTTTTTAGATTTGGCCGcgggttgaatttttttta
ttcattcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000170XLOC_000170Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000296-exon-sc0000001-1491911889:748314..748822TCONS_00000296-exon-sc0000001-1491911889:748314..748822Clytia hemisphaericaexon
TCONS_00000296-exon-sc0000001-1510915933:748314..748822TCONS_00000296-exon-sc0000001-1510915933:748314..748822Clytia hemisphaericaexon
TCONS_00000296-exon-sc0000001-1575043694:748314..748822TCONS_00000296-exon-sc0000001-1575043694:748314..748822Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:748314..748822 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.97653	0.427016	1.29551	0.617192	1.79719	1.10264	0.235951	0.163359	0.134303	0.0720638	0	0	0.125712	0.131549	0.343019	0.167313	0	0	0	0.113317	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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