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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000293 ID=TCONS_00000293|Name=TCONS_00000293|organism=Clytia hemisphaerica|type=transcript|length=1907bp
CTAATGGAAAGCTTTTTCATTGCACGAAAACACgattattaaaataaaat
attaaattctTAACGGTGAAAATCAACGAAAACATGCAAAATTTGGTATC
TCAATCGAAAAATATGCTGGATCATTGAAATTCATGAAGATAACTAGGAT
CAAAAGGCCTGATTCCCATATTCCAtacttttggcaaaatattaaTGGTC
GTAAGGCCAGTCATAGTTGGCTTTATATTTGCTACAGTGTTTTTCAAAAG
GAATAATGACAGTTTCTTTTTAACTTATACTTTAGGCAATGTTCTTGGGG
TCTACTAGTCAGATTGGCCTTGTGTCAAAGATTAAAGCTTTGAAATGATT
ATACCATTCATTGACCCATGTAAGAGTACTTTTTATTGAgcgataaattt
tgaaaatcaaaggtAGCTTATAGATTCCTGTAATTTCCAAAGCTCTGATC
ATAAACTCGTTCAAAGCTTCTTTTGTGGCGCCATTTTCTTCTGTTTGttc
ttgaaaatgtttaaaCTCTTGTTGGAGCTCTGGCAGGTGGTTCTCAATAG
CGTCCGTAACTTTACGGataatattgacaaaatctgaAGTGAATTTTGCC
TCGATTTTACAAATCGCACTTTCTTTTAAACACACCAATAATACTCTCAA
CCCATGGTCcgttttgaagaaattttcgaAAACGTCACTCATAACGTTGA
GATAAGCTTGACTAAATCCACGGAGCAAATCCATTTCTTCACTGAATAGA
CACGACATATGACCATGTTTTAGAAAATCTGATAACTGCTTAAACAGATT
TTCAACAGCCTCGAAGTAATTATTTTCCTCTTCCCATATTTTCCAGACGC
TTTGAGGTGTTTCTTCGGTCAAAAGAttcattgttgttttgattaGATAC
GAGGGTAATTTACGGTCATTTTCTGGGTCTGTAAAATGTTGTGTTTGAAC
TGTAAAAATCAATTTCGCTAACAGGaaacatttcttttgaaaaacacTTC
GTTCCCTTGCTAAAATGACTTCGGcttgtgaaaatgaaagtcgCCATGAA
GCTTGTTCACCATTTACTGATTTCCATACAAGGTGACAACCTTTTTTGTG
GATTTCAGCCATGACCTCTGGCTTTGGCCAGTATCTTTCTTTCTCAAACC
ACGGTTGGGCAATGTCCGGCCAGAAGTCGAGATGCAAACAAGGGACATTA
TCATAATTACTGTCTTTAAAGACAGAAAACACAGTCCCTATGATTGATTC
AGGATCTGCTAAATTATAATTGATTGTCCGTTCCATTGAAGGTCGACCTT
CTTGGACATCTTCTAGAAAGAAACCATCATACTGGTTCCAAGGTTGTGCG
TGGTTCTCAGGTTTGGTTGTTTCAGCGATTCTCATAATTTCATGTATTTT
ATCTCGTTGTTCCGTGGTTGTAGTCGCTATTAGATCTTCCTTTAACTTCA
AATCATAATAACCCATATTAGCAGTCTGGTGTAAAATGAAGGGTGATATG
TCTTTCGTGATGGTACACATTATTCTCATTTCGTCCTTATCAAGTTTTTT
ACCATCGATTGTAACCATAAATGGTATAGCCCATGCACCCTCAATGAAAC
TTCCAGTTAAAAGAAAATTCTTGTCTAACTCTGTAGTTCGAATTTGTATT
GCTTGATAAGAACATTCTCGCATGGCTTCATCGAAGTCGTAAAATTTCTC
AAGAAAATCTTTGACTTGGTCTTTGACCGAcatttttttctcccttcttt
tAGCTAGTTTTGGTGCaaagaaatatttaacaaaacTTGAAAGCCATATA
CAATCTCCCTCTAGTTATGAATGATATCTTTCCCAttgcactttttttta
taacgacgtccaaagttttttaaaccttctgatgttcttattttctagtC
TTAACAG Run BLAST on NCBI protein sequence of TCONS_00000293-protein >TCONS_00000293-protein ID=TCONS_00000293-protein|Name=TCONS_00000293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MSVKDQVKDFLEKFYDFDEAMRECSYQAIQIRTTELDKNFLLTGSFIEGA
WAIPFMVTIDGKKLDKDEMRIMCTITKDISPFILHQTANMGYYDLKLKED
LIATTTTEQRDKIHEIMRIAETTKPENHAQPWNQYDGFFLEDVQEGRPSM
ERTINYNLADPESIIGTVFSVFKDSNYDNVPCLHLDFWPDIAQPWFEKER
YWPKPEVMAEIHKKGCHLVWKSVNGEQASWRLSFSQAEVILARERSVFQK
KCFLLAKLIFTVQTQHFTDPENDRKLPSYLIKTTMNLLTEETPQSVWKIW
EEENNYFEAVENLFKQLSDFLKHGHMSCLFSEEMDLLRGFSQAYLNVMSD
VFENFFKTDHGLRVLLVCLKESAICKIEAKFTSDFVNIIRKVTDAIENHL
PELQQEFKHFQEQTEENGATKEALNEFMIRALEITGIYKLPLIFKIYRSI
KSTLTWVNEWYNHFKALIFDTRPI Run BLAST on NCBI transcript from alignment at sc0000001:694173..696079 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000293 ID=TCONS_00000293|Name=TCONS_00000293|organism=Clytia hemisphaerica|type=transcript|length=1907bp|location=Sequence derived from alignment at sc0000001:694173..696079 (Clytia hemisphaerica)
CTGTTAAGactagaaaataagaacatcagaaggtttaaaaaactttggac
gtcgttataaaaaaaagtgcaaTGGGAAAGATATCATTCATAACTAGAGG
GAGATTGTATATGGCTTTCAAgttttgttaaatatttctttGCACCAAAA
CTAGCTaaaagaagggagaaaaaaatgTCGGTCAAAGACCAAGTCAAAGA
TTTTCTTGAGAAATTTTACGACTTCGATGAAGCCATGCGAGAATGTTCTT
ATCAAGCAATACAAATTCGAACTACAGAGTTAGACAAGAATTTTCTTTTA
ACTGGAAGTTTCATTGAGGGTGCATGGGCTATACCATTTATGGTTACAAT
CGATGGTAAAAAACTTGATAAGGACGAAATGAGAATAATGTGTACCATCA
CGAAAGACATATCACCCTTCATTTTACACCAGACTGCTAATATGGGTTAT
TATGATTTGAAGTTAAAGGAAGATCTAATAGCGACTACAACCACGGAACA
ACGAGATAAAATACATGAAATTATGAGAATCGCTGAAACAACCAAACCTG
AGAACCACGCACAACCTTGGAACCAGTATGATGGTTTCTTTCTAGAAGAT
GTCCAAGAAGGTCGACCTTCAATGGAACGGACAATCAATTATAATTTAGC
AGATCCTGAATCAATCATAGGGACTGTGTTTTCTGTCTTTAAAGACAGTA
ATTATGATAATGTCCCTTGTTTGCATCTCGACTTCTGGCCGGACATTGCC
CAACCGTGGTTTGAGAAAGAAAGATACTGGCCAAAGCCAGAGGTCATGGC
TGAAATCCACAAAAAAGGTTGTCACCTTGTATGGAAATCAGTAAATGGTG
AACAAGCTTCATGGcgactttcattttcacaagCCGAAGTCATTTTAGCA
AGGGAACGAAgtgtttttcaaaagaaatgtttCCTGTTAGCGAAATTGAT
TTTTACAGTTCAAACACAACATTTTACAGACCCAGAAAATGACCGTAAAT
TACCCTCGTATCtaatcaaaacaacaatgaaTCTTTTGACCGAAGAAACA
CCTCAAAGCGTCTGGAAAATATGGGAAGAGGAAAATAATTACTTCGAGGC
TGTTGAAAATCTGTTTAAGCAGTTATCAGATTTTCTAAAACATGGTCATA
TGTCGTGTCTATTCAGTGAAGAAATGGATTTGCTCCGTGGATTTAGTCAA
GCTTATCTCAACGTTATGAGTGACGTTTtcgaaaatttcttcaaaacgGA
CCATGGGTTGAGAGTATTATTGGTGTGTTTAAAAGAAAGTGCGATTTGTA
AAATCGAGGCAAAATTCACTtcagattttgtcaatattatCCGTAAAGTT
ACGGACGCTATTGAGAACCACCTGCCAGAGCTCCAACAAGAGtttaaaca
ttttcaagaaCAAACAGAAGAAAATGGCGCCACAAAAGAAGCTTTGAACG
AGTTTATGATCAGAGCTTTGGAAATTACAGGAATCTATAAGCTacctttg
attttcaaaatttatcgcTCAATAAAAAGTACTCTTACATGGGTCAATGA
ATGGTATAATCATTTCAAAGCTTTAATCTTTGACACAAGGCCAATCTGAC
TAGTAGACCCCAAGAACATTGCCTAAAGTATAAGTTAAAAAGAAACTGTC
ATTATTCCTTTTGAAAAACACTGTAGCAAATATAAAGCCAACTATGACTG
GCCTTACGACCAttaatattttgccaaaagtaTGGAATATGGGAATCAGG
CCTTTTGATCCTAGTTATCTTCATGAATTTCAATGATCCAGCATATTTTT
CGATTGAGATACCAAATTTTGCATGTTTTCGTTGATTTTCACCGTTAaga
atttaatattttattttaataatcGTGTTTTCGTGCAATGAAAAAGCTTT
CCATTAG Coding sequence (CDS) from alignment at sc0000001:694173..696079 >TCONS_00000293 ID=TCONS_00000293|Name=TCONS_00000293|organism=Clytia hemisphaerica|type=CDS|length=1425bp|location=Sequence derived from alignment at sc0000001:694173..696079 (Clytia hemisphaerica)
atgTCGGTCAAAGACCAAGTCAAAGATTTTCTTGAGAAATTTTACGACTT
CGATGAAGCCATGCGAGAATGTTCTTATCAAGCAATACAAATTCGAACTA
CAGAGTTAGACAAGAATTTTCTTTTAACTGGAAGTTTCATTGAGGGTGCA
TGGGCTATACCATTTATGGTTACAATCGATGGTAAAAAACTTGATAAGGA
CGAAATGAGAATAATGTGTACCATCACGAAAGACATATCACCCTTCATTT
TACACCAGACTGCTAATATGGGTTATTATGATTTGAAGTTAAAGGAAGAT
CTAATAGCGACTACAACCACGGAACAACGAGATAAAATACATGAAATTAT
GAGAATCGCTGAAACAACCAAACCTGAGAACCACGCACAACCTTGGAACC
AGTATGATGGTTTCTTTCTAGAAGATGTCCAAGAAGGTCGACCTTCAATG
GAACGGACAATCAATTATAATTTAGCAGATCCTGAATCAATCATAGGGAC
TGTGTTTTCTGTCTTTAAAGACAGTAATTATGATAATGTCCCTTGTTTGC
ATCTCGACTTCTGGCCGGACATTGCCCAACCGTGGTTTGAGAAAGAAAGA
TACTGGCCAAAGCCAGAGGTCATGGCTGAAATCCACAAAAAAGGTTGTCA
CCTTGTATGGAAATCAGTAAATGGTGAACAAGCTTCATGGcgactttcat
tttcacaagCCGAAGTCATTTTAGCAAGGGAACGAAgtgtttttcaaaag
aaatgtttCCTGTTAGCGAAATTGATTTTTACAGTTCAAACACAACATTT
TACAGACCCAGAAAATGACCGTAAATTACCCTCGTATCtaatcaaaacaa
caatgaaTCTTTTGACCGAAGAAACACCTCAAAGCGTCTGGAAAATATGG
GAAGAGGAAAATAATTACTTCGAGGCTGTTGAAAATCTGTTTAAGCAGTT
ATCAGATTTTCTAAAACATGGTCATATGTCGTGTCTATTCAGTGAAGAAA
TGGATTTGCTCCGTGGATTTAGTCAAGCTTATCTCAACGTTATGAGTGAC
GTTTtcgaaaatttcttcaaaacgGACCATGGGTTGAGAGTATTATTGGT
GTGTTTAAAAGAAAGTGCGATTTGTAAAATCGAGGCAAAATTCACTtcag
attttgtcaatattatCCGTAAAGTTACGGACGCTATTGAGAACCACCTG
CCAGAGCTCCAACAAGAGtttaaacattttcaagaaCAAACAGAAGAAAA
TGGCGCCACAAAAGAAGCTTTGAACGAGTTTATGATCAGAGCTTTGGAAA
TTACAGGAATCTATAAGCTacctttgattttcaaaatttatcgcTCAATA
AAAAGTACTCTTACATGGGTCAATGAATGGTATAATCATTTCAAAGCTTT
AATCTTTGACACAAGGCCAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000293-exon-sc0000001-1491911889:694173..696079 | TCONS_00000293-exon-sc0000001-1491911889:694173..696079 | Clytia hemisphaerica | exon |
| TCONS_00000293-exon-sc0000001-1510915933:694173..696079 | TCONS_00000293-exon-sc0000001-1510915933:694173..696079 | Clytia hemisphaerica | exon |
| TCONS_00000293-exon-sc0000001-1575043694:694173..696079 | TCONS_00000293-exon-sc0000001-1575043694:694173..696079 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:694173..696079 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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