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TCONS_00000293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000293
Unique NameTCONS_00000293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1907

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000293 ID=TCONS_00000293|Name=TCONS_00000293|organism=Clytia hemisphaerica|type=transcript|length=1907bp
CTAATGGAAAGCTTTTTCATTGCACGAAAACACgattattaaaataaaat
attaaattctTAACGGTGAAAATCAACGAAAACATGCAAAATTTGGTATC
TCAATCGAAAAATATGCTGGATCATTGAAATTCATGAAGATAACTAGGAT
CAAAAGGCCTGATTCCCATATTCCAtacttttggcaaaatattaaTGGTC
GTAAGGCCAGTCATAGTTGGCTTTATATTTGCTACAGTGTTTTTCAAAAG
GAATAATGACAGTTTCTTTTTAACTTATACTTTAGGCAATGTTCTTGGGG
TCTACTAGTCAGATTGGCCTTGTGTCAAAGATTAAAGCTTTGAAATGATT
ATACCATTCATTGACCCATGTAAGAGTACTTTTTATTGAgcgataaattt
tgaaaatcaaaggtAGCTTATAGATTCCTGTAATTTCCAAAGCTCTGATC
ATAAACTCGTTCAAAGCTTCTTTTGTGGCGCCATTTTCTTCTGTTTGttc
ttgaaaatgtttaaaCTCTTGTTGGAGCTCTGGCAGGTGGTTCTCAATAG
CGTCCGTAACTTTACGGataatattgacaaaatctgaAGTGAATTTTGCC
TCGATTTTACAAATCGCACTTTCTTTTAAACACACCAATAATACTCTCAA
CCCATGGTCcgttttgaagaaattttcgaAAACGTCACTCATAACGTTGA
GATAAGCTTGACTAAATCCACGGAGCAAATCCATTTCTTCACTGAATAGA
CACGACATATGACCATGTTTTAGAAAATCTGATAACTGCTTAAACAGATT
TTCAACAGCCTCGAAGTAATTATTTTCCTCTTCCCATATTTTCCAGACGC
TTTGAGGTGTTTCTTCGGTCAAAAGAttcattgttgttttgattaGATAC
GAGGGTAATTTACGGTCATTTTCTGGGTCTGTAAAATGTTGTGTTTGAAC
TGTAAAAATCAATTTCGCTAACAGGaaacatttcttttgaaaaacacTTC
GTTCCCTTGCTAAAATGACTTCGGcttgtgaaaatgaaagtcgCCATGAA
GCTTGTTCACCATTTACTGATTTCCATACAAGGTGACAACCTTTTTTGTG
GATTTCAGCCATGACCTCTGGCTTTGGCCAGTATCTTTCTTTCTCAAACC
ACGGTTGGGCAATGTCCGGCCAGAAGTCGAGATGCAAACAAGGGACATTA
TCATAATTACTGTCTTTAAAGACAGAAAACACAGTCCCTATGATTGATTC
AGGATCTGCTAAATTATAATTGATTGTCCGTTCCATTGAAGGTCGACCTT
CTTGGACATCTTCTAGAAAGAAACCATCATACTGGTTCCAAGGTTGTGCG
TGGTTCTCAGGTTTGGTTGTTTCAGCGATTCTCATAATTTCATGTATTTT
ATCTCGTTGTTCCGTGGTTGTAGTCGCTATTAGATCTTCCTTTAACTTCA
AATCATAATAACCCATATTAGCAGTCTGGTGTAAAATGAAGGGTGATATG
TCTTTCGTGATGGTACACATTATTCTCATTTCGTCCTTATCAAGTTTTTT
ACCATCGATTGTAACCATAAATGGTATAGCCCATGCACCCTCAATGAAAC
TTCCAGTTAAAAGAAAATTCTTGTCTAACTCTGTAGTTCGAATTTGTATT
GCTTGATAAGAACATTCTCGCATGGCTTCATCGAAGTCGTAAAATTTCTC
AAGAAAATCTTTGACTTGGTCTTTGACCGAcatttttttctcccttcttt
tAGCTAGTTTTGGTGCaaagaaatatttaacaaaacTTGAAAGCCATATA
CAATCTCCCTCTAGTTATGAATGATATCTTTCCCAttgcactttttttta
taacgacgtccaaagttttttaaaccttctgatgttcttattttctagtC
TTAACAG
Run BLAST on NCBI

protein sequence of TCONS_00000293-protein

>TCONS_00000293-protein ID=TCONS_00000293-protein|Name=TCONS_00000293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MSVKDQVKDFLEKFYDFDEAMRECSYQAIQIRTTELDKNFLLTGSFIEGA
WAIPFMVTIDGKKLDKDEMRIMCTITKDISPFILHQTANMGYYDLKLKED
LIATTTTEQRDKIHEIMRIAETTKPENHAQPWNQYDGFFLEDVQEGRPSM
ERTINYNLADPESIIGTVFSVFKDSNYDNVPCLHLDFWPDIAQPWFEKER
YWPKPEVMAEIHKKGCHLVWKSVNGEQASWRLSFSQAEVILARERSVFQK
KCFLLAKLIFTVQTQHFTDPENDRKLPSYLIKTTMNLLTEETPQSVWKIW
EEENNYFEAVENLFKQLSDFLKHGHMSCLFSEEMDLLRGFSQAYLNVMSD
VFENFFKTDHGLRVLLVCLKESAICKIEAKFTSDFVNIIRKVTDAIENHL
PELQQEFKHFQEQTEENGATKEALNEFMIRALEITGIYKLPLIFKIYRSI
KSTLTWVNEWYNHFKALIFDTRPI
Run BLAST on NCBI

transcript from alignment at sc0000001:694173..696079

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000293 ID=TCONS_00000293|Name=TCONS_00000293|organism=Clytia hemisphaerica|type=transcript|length=1907bp|location=Sequence derived from alignment at sc0000001:694173..696079 (Clytia hemisphaerica)
CTGTTAAGactagaaaataagaacatcagaaggtttaaaaaactttggac gtcgttataaaaaaaagtgcaaTGGGAAAGATATCATTCATAACTAGAGG GAGATTGTATATGGCTTTCAAgttttgttaaatatttctttGCACCAAAA CTAGCTaaaagaagggagaaaaaaatgTCGGTCAAAGACCAAGTCAAAGA TTTTCTTGAGAAATTTTACGACTTCGATGAAGCCATGCGAGAATGTTCTT ATCAAGCAATACAAATTCGAACTACAGAGTTAGACAAGAATTTTCTTTTA ACTGGAAGTTTCATTGAGGGTGCATGGGCTATACCATTTATGGTTACAAT CGATGGTAAAAAACTTGATAAGGACGAAATGAGAATAATGTGTACCATCA CGAAAGACATATCACCCTTCATTTTACACCAGACTGCTAATATGGGTTAT TATGATTTGAAGTTAAAGGAAGATCTAATAGCGACTACAACCACGGAACA ACGAGATAAAATACATGAAATTATGAGAATCGCTGAAACAACCAAACCTG AGAACCACGCACAACCTTGGAACCAGTATGATGGTTTCTTTCTAGAAGAT GTCCAAGAAGGTCGACCTTCAATGGAACGGACAATCAATTATAATTTAGC AGATCCTGAATCAATCATAGGGACTGTGTTTTCTGTCTTTAAAGACAGTA ATTATGATAATGTCCCTTGTTTGCATCTCGACTTCTGGCCGGACATTGCC CAACCGTGGTTTGAGAAAGAAAGATACTGGCCAAAGCCAGAGGTCATGGC TGAAATCCACAAAAAAGGTTGTCACCTTGTATGGAAATCAGTAAATGGTG AACAAGCTTCATGGcgactttcattttcacaagCCGAAGTCATTTTAGCA AGGGAACGAAgtgtttttcaaaagaaatgtttCCTGTTAGCGAAATTGAT TTTTACAGTTCAAACACAACATTTTACAGACCCAGAAAATGACCGTAAAT TACCCTCGTATCtaatcaaaacaacaatgaaTCTTTTGACCGAAGAAACA CCTCAAAGCGTCTGGAAAATATGGGAAGAGGAAAATAATTACTTCGAGGC TGTTGAAAATCTGTTTAAGCAGTTATCAGATTTTCTAAAACATGGTCATA TGTCGTGTCTATTCAGTGAAGAAATGGATTTGCTCCGTGGATTTAGTCAA GCTTATCTCAACGTTATGAGTGACGTTTtcgaaaatttcttcaaaacgGA CCATGGGTTGAGAGTATTATTGGTGTGTTTAAAAGAAAGTGCGATTTGTA AAATCGAGGCAAAATTCACTtcagattttgtcaatattatCCGTAAAGTT ACGGACGCTATTGAGAACCACCTGCCAGAGCTCCAACAAGAGtttaaaca ttttcaagaaCAAACAGAAGAAAATGGCGCCACAAAAGAAGCTTTGAACG AGTTTATGATCAGAGCTTTGGAAATTACAGGAATCTATAAGCTacctttg attttcaaaatttatcgcTCAATAAAAAGTACTCTTACATGGGTCAATGA ATGGTATAATCATTTCAAAGCTTTAATCTTTGACACAAGGCCAATCTGAC TAGTAGACCCCAAGAACATTGCCTAAAGTATAAGTTAAAAAGAAACTGTC ATTATTCCTTTTGAAAAACACTGTAGCAAATATAAAGCCAACTATGACTG GCCTTACGACCAttaatattttgccaaaagtaTGGAATATGGGAATCAGG CCTTTTGATCCTAGTTATCTTCATGAATTTCAATGATCCAGCATATTTTT CGATTGAGATACCAAATTTTGCATGTTTTCGTTGATTTTCACCGTTAaga atttaatattttattttaataatcGTGTTTTCGTGCAATGAAAAAGCTTT CCATTAG

Coding sequence (CDS) from alignment at sc0000001:694173..696079

>TCONS_00000293 ID=TCONS_00000293|Name=TCONS_00000293|organism=Clytia hemisphaerica|type=CDS|length=1425bp|location=Sequence derived from alignment at sc0000001:694173..696079 (Clytia hemisphaerica)
atgTCGGTCAAAGACCAAGTCAAAGATTTTCTTGAGAAATTTTACGACTT
CGATGAAGCCATGCGAGAATGTTCTTATCAAGCAATACAAATTCGAACTA
CAGAGTTAGACAAGAATTTTCTTTTAACTGGAAGTTTCATTGAGGGTGCA
TGGGCTATACCATTTATGGTTACAATCGATGGTAAAAAACTTGATAAGGA
CGAAATGAGAATAATGTGTACCATCACGAAAGACATATCACCCTTCATTT
TACACCAGACTGCTAATATGGGTTATTATGATTTGAAGTTAAAGGAAGAT
CTAATAGCGACTACAACCACGGAACAACGAGATAAAATACATGAAATTAT
GAGAATCGCTGAAACAACCAAACCTGAGAACCACGCACAACCTTGGAACC
AGTATGATGGTTTCTTTCTAGAAGATGTCCAAGAAGGTCGACCTTCAATG
GAACGGACAATCAATTATAATTTAGCAGATCCTGAATCAATCATAGGGAC
TGTGTTTTCTGTCTTTAAAGACAGTAATTATGATAATGTCCCTTGTTTGC
ATCTCGACTTCTGGCCGGACATTGCCCAACCGTGGTTTGAGAAAGAAAGA
TACTGGCCAAAGCCAGAGGTCATGGCTGAAATCCACAAAAAAGGTTGTCA
CCTTGTATGGAAATCAGTAAATGGTGAACAAGCTTCATGGcgactttcat
tttcacaagCCGAAGTCATTTTAGCAAGGGAACGAAgtgtttttcaaaag
aaatgtttCCTGTTAGCGAAATTGATTTTTACAGTTCAAACACAACATTT
TACAGACCCAGAAAATGACCGTAAATTACCCTCGTATCtaatcaaaacaa
caatgaaTCTTTTGACCGAAGAAACACCTCAAAGCGTCTGGAAAATATGG
GAAGAGGAAAATAATTACTTCGAGGCTGTTGAAAATCTGTTTAAGCAGTT
ATCAGATTTTCTAAAACATGGTCATATGTCGTGTCTATTCAGTGAAGAAA
TGGATTTGCTCCGTGGATTTAGTCAAGCTTATCTCAACGTTATGAGTGAC
GTTTtcgaaaatttcttcaaaacgGACCATGGGTTGAGAGTATTATTGGT
GTGTTTAAAAGAAAGTGCGATTTGTAAAATCGAGGCAAAATTCACTtcag
attttgtcaatattatCCGTAAAGTTACGGACGCTATTGAGAACCACCTG
CCAGAGCTCCAACAAGAGtttaaacattttcaagaaCAAACAGAAGAAAA
TGGCGCCACAAAAGAAGCTTTGAACGAGTTTATGATCAGAGCTTTGGAAA
TTACAGGAATCTATAAGCTacctttgattttcaaaatttatcgcTCAATA
AAAAGTACTCTTACATGGGTCAATGAATGGTATAATCATTTCAAAGCTTT
AATCTTTGACACAAGGCCAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000167XLOC_000167Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000293-proteinTCONS_00000293-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000293-exon-sc0000001-1491911889:694173..696079TCONS_00000293-exon-sc0000001-1491911889:694173..696079Clytia hemisphaericaexon
TCONS_00000293-exon-sc0000001-1510915933:694173..696079TCONS_00000293-exon-sc0000001-1510915933:694173..696079Clytia hemisphaericaexon
TCONS_00000293-exon-sc0000001-1575043694:694173..696079TCONS_00000293-exon-sc0000001-1575043694:694173..696079Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:694173..696079 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.188045 0.142624 0.686055 0.624908 0.394471 0.24492 0.268623 0.301778 0.0352137 0.0436178 0 0.0139152 5.43327 5.9167 0.0711853 0.0509285 0.894041 0.771674 8.90646 7.18172 2.08074 1.50759 0.0479129 0.0653397 0.0224328 0.0600622 0.0286496 0.0917269 0 0.0236275
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024810Mab-21_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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