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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000290 ID=TCONS_00000290|Name=TCONS_00000290|organism=Clytia hemisphaerica|type=transcript|length=1413bp
TTTCGTATATTGGGAGTGATCTCCGATAAATGCTGGTAATTGTTCTTTTG
AGTGAAATAAAACATTGTGGCTGGTACAAAGTGTGTCGATTGCATCGCTG
ATATATTTGACCCAGTTGGTTGTTGTGATTGGTGCTATTTGGTCTTTCTT
CGAAATGTGTACAGCAAAAATGATCAAACGCAAAATCTTTATGAGATGCT
CGGCGGACGGTAAAAATGGTATCGGAACAGTTTGTTCAGGAAATCGTTTG
AATATCGATGATAACCATAACTTAATGTCAGTGTTTATGTTAATGTAATG
TTGAGTTTCGAAAGACAGGGTATTCTCACCGACACAAATCACTGGGAAAA
ATGTCCAGTCGGCACCAAACTGATCACCTAATCTTTCTTGGAATAGCGTG
TGATATTTTTCGATTTGGTTAAAAgcggtgtcattgagttgtctcTTTAT
TTCGATACCAATAACGAGTTTTCTTGGCCAAGAGAAAATGACCAGGTCAA
ATTCTTGATGTTTCTTTTTGTTGACGTCAGTTATAAAACAAACCGATTGA
AGGATAACTGTATCGTTTAATAAAATCTCCTCTCTCATAGACAATAATTT
ATCGAAGAACATTTGTTCGTAAGCCTCGCCACGATGTGATAACACCaatt
caaaaaaccataacaagTTTGAATCCGTGCATGGGTTTTGTTTAATCAGT
TTCTCTATTCCACGTTTGAGATTCTTTTTACCGttcacatttttcaaagt
ttgtagATAATTTTGTAGAGTGGCTTCGAGCTCTGTTCCTGGTTTCTTAG
AAACCAGCTCAGCAATGCAGCCTTTaatgaagatatttgtttcTGAAATT
GAAGGCGGTAAATTGACCTCTTTTCCATGCAATTCCTGGGCGACGAGATA
TGACATTTTAACGTTTAGGATCCACTTGTCGAAATCAGCAGCATTTATTT
CTTTAGCATCATCAGTTGATAATCCTTGTTGTTGGACGAAAGTTTTTAAC
TGTTCTGTGAACCAATAATTGGGAAATTCATTCGATAAGTTAGCCGACGT
TGTTAGAAATCTTCTTTCAAAGTCGTAATCCAAAAGAGGAACTGCAGATT
TACTTGTATATTGATTTGAACAAAACACTGGAGGAATGAATAGACATTCG
TGTTTTGTGTTATCAACGAGAGAAGAATCGCCATATTCTCTCTGAAGTAA
ATAATCAGCTGCAGCTATCGGGTCGGTGAATATTTGCCCGTTCCCGAGGT
TAAACTGTTTTGTTTGTTGCTGTAATGTGTTATGAGAATGCCTCAGAACT
TGTTGGTGTAGTGATTTACCCAGAGTGCATTTTGATGGGTCGATAATTTT
CGGTTTCATAGCCATGACTTTATTCTCCATACTGTTATTATTCACTGTAG
CCATTTTCCTTTC Run BLAST on NCBI protein sequence of TCONS_00000290-protein >TCONS_00000290-protein ID=TCONS_00000290-protein|Name=TCONS_00000290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
ERKMATVNNNSMENKVMAMKPKIIDPSKCTLGKSLHQQVLRHSHNTLQQQ
TKQFNLGNGQIFTDPIAAADYLLQREYGDSSLVDNTKHECLFIPPVFCSN
QYTSKSAVPLLDYDFERRFLTTSANLSNEFPNYWFTEQLKTFVQQQGLST
DDAKEINAADFDKWILNVKMSYLVAQELHGKEVNLPPSISETNIFIKGCI
AELVSKKPGTELEATLQNYLQTLKNVNGKKNLKRGIEKLIKQNPCTDSNL
LWFFELVLSHRGEAYEQMFFDKLLSMREEILLNDTVILQSVCFITDVNKK
KHQEFDLVIFSWPRKLVIGIEIKRQLNDTAFNQIEKYHTLFQERLGDQFG
ADWTFFPVICVGENTLSFETQHYININTDIKLWLSSIFKRFPEQTVPIPF
LPSAEHLIKILRLIIFAVHISKKDQIAPITTTNWVKYISDAIDTLCTSHN
VLFHSKEQLPAFIGDHSQYTK Run BLAST on NCBI transcript from alignment at sc0000001:643525..644937 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000290 ID=TCONS_00000290|Name=TCONS_00000290|organism=Clytia hemisphaerica|type=transcript|length=1413bp|location=Sequence derived from alignment at sc0000001:643525..644937 (Clytia hemisphaerica)
GAAAGGAAAATGGCTACAGTGAATAATAACAGTATGGAGAATAAAGTCAT
GGCTATGAAACCGAAAATTATCGACCCATCAAAATGCACTCTGGGTAAAT
CACTACACCAACAAGTTCTGAGGCATTCTCATAACACATTACAGCAACAA
ACAAAACAGTTTAACCTCGGGAACGGGCAAATATTCACCGACCCGATAGC
TGCAGCTGATTATTTACTTCAGAGAGAATATGGCGATTCTTCTCTCGTTG
ATAACACAAAACACGAATGTCTATTCATTCCTCCAGTGTTTTGTTCAAAT
CAATATACAAGTAAATCTGCAGTTCCTCTTTTGGATTACGACTTTGAAAG
AAGATTTCTAACAACGTCGGCTAACTTATCGAATGAATTTCCCAATTATT
GGTTCACAGAACAGTTAAAAACTTTCGTCCAACAACAAGGATTATCAACT
GATGATGCTAAAGAAATAAATGCTGCTGATTTCGACAAGTGGATCCTAAA
CGTTAAAATGTCATATCTCGTCGCCCAGGAATTGCATGGAAAAGAGGTCA
ATTTACCGCCTTCAATTTCAgaaacaaatatcttcattAAAGGCTGCATT
GCTGAGCTGGTTTCTAAGAAACCAGGAACAGAGCTCGAAGCCACTCTACA
AAATTATctacaaactttgaaaaatgtgaaCGGTAAAAAGAATCTCAAAC
GTGGAATAGAGAAACTGATTAAACAAAACCCATGCACGGATTCAAActtg
ttatggttttttgaattGGTGTTATCACATCGTGGCGAGGCTTACGAACA
AATGTTCTTCGATAAATTATTGTCTATGAGAGAGGAGATTTTATTAAACG
ATACAGTTATCCTTCAATCGGTTTGTTTTATAACTGACGTCAACAAAAAG
AAACATCAAGAATTTGACCTGGTCATTTTCTCTTGGCCAAGAAAACTCGT
TATTGGTATCGAAATAAAgagacaactcaatgacaccgcTTTTAACCAAA
TCGAAAAATATCACACGCTATTCCAAGAAAGATTAGGTGATCAGTTTGGT
GCCGACTGGACATTTTTCCCAGTGATTTGTGTCGGTGAGAATACCCTGTC
TTTCGAAACTCAACATTACATTAACATAAACACTGACATTAAGTTATGGT
TATCATCGATATTCAAACGATTTCCTGAACAAACTGTTCCGATACCATTT
TTACCGTCCGCCGAGCATCTCATAAAGATTTTGCGTTTGATCATTTTTGC
TGTACACATTTCGAAGAAAGACCAAATAGCACCAATCACAACAACCAACT
GGGTCAAATATATCAGCGATGCAATCGACACACTTTGTACCAGCCACAAT
GTTTTATTTCACTCAAAAGAACAATTACCAGCATTTATCGGAGATCACTC
CCAATATACGAAA Coding sequence (CDS) from alignment at sc0000001:643525..644937 >TCONS_00000290 ID=TCONS_00000290|Name=TCONS_00000290|organism=Clytia hemisphaerica|type=CDS|length=1413bp|location=Sequence derived from alignment at sc0000001:643525..644937 (Clytia hemisphaerica)
GAAAGGAAAATGGCTACAGTGAATAATAACAGTATGGAGAATAAAGTCAT
GGCTATGAAACCGAAAATTATCGACCCATCAAAATGCACTCTGGGTAAAT
CACTACACCAACAAGTTCTGAGGCATTCTCATAACACATTACAGCAACAA
ACAAAACAGTTTAACCTCGGGAACGGGCAAATATTCACCGACCCGATAGC
TGCAGCTGATTATTTACTTCAGAGAGAATATGGCGATTCTTCTCTCGTTG
ATAACACAAAACACGAATGTCTATTCATTCCTCCAGTGTTTTGTTCAAAT
CAATATACAAGTAAATCTGCAGTTCCTCTTTTGGATTACGACTTTGAAAG
AAGATTTCTAACAACGTCGGCTAACTTATCGAATGAATTTCCCAATTATT
GGTTCACAGAACAGTTAAAAACTTTCGTCCAACAACAAGGATTATCAACT
GATGATGCTAAAGAAATAAATGCTGCTGATTTCGACAAGTGGATCCTAAA
CGTTAAAATGTCATATCTCGTCGCCCAGGAATTGCATGGAAAAGAGGTCA
ATTTACCGCCTTCAATTTCAgaaacaaatatcttcattAAAGGCTGCATT
GCTGAGCTGGTTTCTAAGAAACCAGGAACAGAGCTCGAAGCCACTCTACA
AAATTATctacaaactttgaaaaatgtgaaCGGTAAAAAGAATCTCAAAC
GTGGAATAGAGAAACTGATTAAACAAAACCCATGCACGGATTCAAActtg
ttatggttttttgaattGGTGTTATCACATCGTGGCGAGGCTTACGAACA
AATGTTCTTCGATAAATTATTGTCTATGAGAGAGGAGATTTTATTAAACG
ATACAGTTATCCTTCAATCGGTTTGTTTTATAACTGACGTCAACAAAAAG
AAACATCAAGAATTTGACCTGGTCATTTTCTCTTGGCCAAGAAAACTCGT
TATTGGTATCGAAATAAAgagacaactcaatgacaccgcTTTTAACCAAA
TCGAAAAATATCACACGCTATTCCAAGAAAGATTAGGTGATCAGTTTGGT
GCCGACTGGACATTTTTCCCAGTGATTTGTGTCGGTGAGAATACCCTGTC
TTTCGAAACTCAACATTACATTAACATAAACACTGACATTAAGTTATGGT
TATCATCGATATTCAAACGATTTCCTGAACAAACTGTTCCGATACCATTT
TTACCGTCCGCCGAGCATCTCATAAAGATTTTGCGTTTGATCATTTTTGC
TGTACACATTTCGAAGAAAGACCAAATAGCACCAATCACAACAACCAACT
GGGTCAAATATATCAGCGATGCAATCGACACACTTTGTACCAGCCACAAT
GTTTTATTTCACTCAAAAGAACAATTACCAGCATTTATCGGAGATCACTC
CCAATATACGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000290-exon-sc0000001-1491911889:643525..644937 | TCONS_00000290-exon-sc0000001-1491911889:643525..644937 | Clytia hemisphaerica | exon |
| TCONS_00000290-exon-sc0000001-1510915933:643525..644937 | TCONS_00000290-exon-sc0000001-1510915933:643525..644937 | Clytia hemisphaerica | exon |
| TCONS_00000290-exon-sc0000001-1575043694:643525..644937 | TCONS_00000290-exon-sc0000001-1575043694:643525..644937 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:643525..644937 . |
Blast
The following BLAST results are available for this feature:
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