Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000290 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000290
Unique NameTCONS_00000290
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000290 ID=TCONS_00000290|Name=TCONS_00000290|organism=Clytia hemisphaerica|type=transcript|length=1413bp
TTTCGTATATTGGGAGTGATCTCCGATAAATGCTGGTAATTGTTCTTTTG
AGTGAAATAAAACATTGTGGCTGGTACAAAGTGTGTCGATTGCATCGCTG
ATATATTTGACCCAGTTGGTTGTTGTGATTGGTGCTATTTGGTCTTTCTT
CGAAATGTGTACAGCAAAAATGATCAAACGCAAAATCTTTATGAGATGCT
CGGCGGACGGTAAAAATGGTATCGGAACAGTTTGTTCAGGAAATCGTTTG
AATATCGATGATAACCATAACTTAATGTCAGTGTTTATGTTAATGTAATG
TTGAGTTTCGAAAGACAGGGTATTCTCACCGACACAAATCACTGGGAAAA
ATGTCCAGTCGGCACCAAACTGATCACCTAATCTTTCTTGGAATAGCGTG
TGATATTTTTCGATTTGGTTAAAAgcggtgtcattgagttgtctcTTTAT
TTCGATACCAATAACGAGTTTTCTTGGCCAAGAGAAAATGACCAGGTCAA
ATTCTTGATGTTTCTTTTTGTTGACGTCAGTTATAAAACAAACCGATTGA
AGGATAACTGTATCGTTTAATAAAATCTCCTCTCTCATAGACAATAATTT
ATCGAAGAACATTTGTTCGTAAGCCTCGCCACGATGTGATAACACCaatt
caaaaaaccataacaagTTTGAATCCGTGCATGGGTTTTGTTTAATCAGT
TTCTCTATTCCACGTTTGAGATTCTTTTTACCGttcacatttttcaaagt
ttgtagATAATTTTGTAGAGTGGCTTCGAGCTCTGTTCCTGGTTTCTTAG
AAACCAGCTCAGCAATGCAGCCTTTaatgaagatatttgtttcTGAAATT
GAAGGCGGTAAATTGACCTCTTTTCCATGCAATTCCTGGGCGACGAGATA
TGACATTTTAACGTTTAGGATCCACTTGTCGAAATCAGCAGCATTTATTT
CTTTAGCATCATCAGTTGATAATCCTTGTTGTTGGACGAAAGTTTTTAAC
TGTTCTGTGAACCAATAATTGGGAAATTCATTCGATAAGTTAGCCGACGT
TGTTAGAAATCTTCTTTCAAAGTCGTAATCCAAAAGAGGAACTGCAGATT
TACTTGTATATTGATTTGAACAAAACACTGGAGGAATGAATAGACATTCG
TGTTTTGTGTTATCAACGAGAGAAGAATCGCCATATTCTCTCTGAAGTAA
ATAATCAGCTGCAGCTATCGGGTCGGTGAATATTTGCCCGTTCCCGAGGT
TAAACTGTTTTGTTTGTTGCTGTAATGTGTTATGAGAATGCCTCAGAACT
TGTTGGTGTAGTGATTTACCCAGAGTGCATTTTGATGGGTCGATAATTTT
CGGTTTCATAGCCATGACTTTATTCTCCATACTGTTATTATTCACTGTAG
CCATTTTCCTTTC
Run BLAST on NCBI

protein sequence of TCONS_00000290-protein

>TCONS_00000290-protein ID=TCONS_00000290-protein|Name=TCONS_00000290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
ERKMATVNNNSMENKVMAMKPKIIDPSKCTLGKSLHQQVLRHSHNTLQQQ
TKQFNLGNGQIFTDPIAAADYLLQREYGDSSLVDNTKHECLFIPPVFCSN
QYTSKSAVPLLDYDFERRFLTTSANLSNEFPNYWFTEQLKTFVQQQGLST
DDAKEINAADFDKWILNVKMSYLVAQELHGKEVNLPPSISETNIFIKGCI
AELVSKKPGTELEATLQNYLQTLKNVNGKKNLKRGIEKLIKQNPCTDSNL
LWFFELVLSHRGEAYEQMFFDKLLSMREEILLNDTVILQSVCFITDVNKK
KHQEFDLVIFSWPRKLVIGIEIKRQLNDTAFNQIEKYHTLFQERLGDQFG
ADWTFFPVICVGENTLSFETQHYININTDIKLWLSSIFKRFPEQTVPIPF
LPSAEHLIKILRLIIFAVHISKKDQIAPITTTNWVKYISDAIDTLCTSHN
VLFHSKEQLPAFIGDHSQYTK
Run BLAST on NCBI

transcript from alignment at sc0000001:643525..644937

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000290 ID=TCONS_00000290|Name=TCONS_00000290|organism=Clytia hemisphaerica|type=transcript|length=1413bp|location=Sequence derived from alignment at sc0000001:643525..644937 (Clytia hemisphaerica)
GAAAGGAAAATGGCTACAGTGAATAATAACAGTATGGAGAATAAAGTCAT GGCTATGAAACCGAAAATTATCGACCCATCAAAATGCACTCTGGGTAAAT CACTACACCAACAAGTTCTGAGGCATTCTCATAACACATTACAGCAACAA ACAAAACAGTTTAACCTCGGGAACGGGCAAATATTCACCGACCCGATAGC TGCAGCTGATTATTTACTTCAGAGAGAATATGGCGATTCTTCTCTCGTTG ATAACACAAAACACGAATGTCTATTCATTCCTCCAGTGTTTTGTTCAAAT CAATATACAAGTAAATCTGCAGTTCCTCTTTTGGATTACGACTTTGAAAG AAGATTTCTAACAACGTCGGCTAACTTATCGAATGAATTTCCCAATTATT GGTTCACAGAACAGTTAAAAACTTTCGTCCAACAACAAGGATTATCAACT GATGATGCTAAAGAAATAAATGCTGCTGATTTCGACAAGTGGATCCTAAA CGTTAAAATGTCATATCTCGTCGCCCAGGAATTGCATGGAAAAGAGGTCA ATTTACCGCCTTCAATTTCAgaaacaaatatcttcattAAAGGCTGCATT GCTGAGCTGGTTTCTAAGAAACCAGGAACAGAGCTCGAAGCCACTCTACA AAATTATctacaaactttgaaaaatgtgaaCGGTAAAAAGAATCTCAAAC GTGGAATAGAGAAACTGATTAAACAAAACCCATGCACGGATTCAAActtg ttatggttttttgaattGGTGTTATCACATCGTGGCGAGGCTTACGAACA AATGTTCTTCGATAAATTATTGTCTATGAGAGAGGAGATTTTATTAAACG ATACAGTTATCCTTCAATCGGTTTGTTTTATAACTGACGTCAACAAAAAG AAACATCAAGAATTTGACCTGGTCATTTTCTCTTGGCCAAGAAAACTCGT TATTGGTATCGAAATAAAgagacaactcaatgacaccgcTTTTAACCAAA TCGAAAAATATCACACGCTATTCCAAGAAAGATTAGGTGATCAGTTTGGT GCCGACTGGACATTTTTCCCAGTGATTTGTGTCGGTGAGAATACCCTGTC TTTCGAAACTCAACATTACATTAACATAAACACTGACATTAAGTTATGGT TATCATCGATATTCAAACGATTTCCTGAACAAACTGTTCCGATACCATTT TTACCGTCCGCCGAGCATCTCATAAAGATTTTGCGTTTGATCATTTTTGC TGTACACATTTCGAAGAAAGACCAAATAGCACCAATCACAACAACCAACT GGGTCAAATATATCAGCGATGCAATCGACACACTTTGTACCAGCCACAAT GTTTTATTTCACTCAAAAGAACAATTACCAGCATTTATCGGAGATCACTC CCAATATACGAAA

Coding sequence (CDS) from alignment at sc0000001:643525..644937

>TCONS_00000290 ID=TCONS_00000290|Name=TCONS_00000290|organism=Clytia hemisphaerica|type=CDS|length=1413bp|location=Sequence derived from alignment at sc0000001:643525..644937 (Clytia hemisphaerica)
GAAAGGAAAATGGCTACAGTGAATAATAACAGTATGGAGAATAAAGTCAT
GGCTATGAAACCGAAAATTATCGACCCATCAAAATGCACTCTGGGTAAAT
CACTACACCAACAAGTTCTGAGGCATTCTCATAACACATTACAGCAACAA
ACAAAACAGTTTAACCTCGGGAACGGGCAAATATTCACCGACCCGATAGC
TGCAGCTGATTATTTACTTCAGAGAGAATATGGCGATTCTTCTCTCGTTG
ATAACACAAAACACGAATGTCTATTCATTCCTCCAGTGTTTTGTTCAAAT
CAATATACAAGTAAATCTGCAGTTCCTCTTTTGGATTACGACTTTGAAAG
AAGATTTCTAACAACGTCGGCTAACTTATCGAATGAATTTCCCAATTATT
GGTTCACAGAACAGTTAAAAACTTTCGTCCAACAACAAGGATTATCAACT
GATGATGCTAAAGAAATAAATGCTGCTGATTTCGACAAGTGGATCCTAAA
CGTTAAAATGTCATATCTCGTCGCCCAGGAATTGCATGGAAAAGAGGTCA
ATTTACCGCCTTCAATTTCAgaaacaaatatcttcattAAAGGCTGCATT
GCTGAGCTGGTTTCTAAGAAACCAGGAACAGAGCTCGAAGCCACTCTACA
AAATTATctacaaactttgaaaaatgtgaaCGGTAAAAAGAATCTCAAAC
GTGGAATAGAGAAACTGATTAAACAAAACCCATGCACGGATTCAAActtg
ttatggttttttgaattGGTGTTATCACATCGTGGCGAGGCTTACGAACA
AATGTTCTTCGATAAATTATTGTCTATGAGAGAGGAGATTTTATTAAACG
ATACAGTTATCCTTCAATCGGTTTGTTTTATAACTGACGTCAACAAAAAG
AAACATCAAGAATTTGACCTGGTCATTTTCTCTTGGCCAAGAAAACTCGT
TATTGGTATCGAAATAAAgagacaactcaatgacaccgcTTTTAACCAAA
TCGAAAAATATCACACGCTATTCCAAGAAAGATTAGGTGATCAGTTTGGT
GCCGACTGGACATTTTTCCCAGTGATTTGTGTCGGTGAGAATACCCTGTC
TTTCGAAACTCAACATTACATTAACATAAACACTGACATTAAGTTATGGT
TATCATCGATATTCAAACGATTTCCTGAACAAACTGTTCCGATACCATTT
TTACCGTCCGCCGAGCATCTCATAAAGATTTTGCGTTTGATCATTTTTGC
TGTACACATTTCGAAGAAAGACCAAATAGCACCAATCACAACAACCAACT
GGGTCAAATATATCAGCGATGCAATCGACACACTTTGTACCAGCCACAAT
GTTTTATTTCACTCAAAAGAACAATTACCAGCATTTATCGGAGATCACTC
CCAATATACGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000165XLOC_000165Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000290-exon-sc0000001-1491911889:643525..644937TCONS_00000290-exon-sc0000001-1491911889:643525..644937Clytia hemisphaericaexon
TCONS_00000290-exon-sc0000001-1510915933:643525..644937TCONS_00000290-exon-sc0000001-1510915933:643525..644937Clytia hemisphaericaexon
TCONS_00000290-exon-sc0000001-1575043694:643525..644937TCONS_00000290-exon-sc0000001-1575043694:643525..644937Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000290-proteinTCONS_00000290-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:643525..644937 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.210618 0.36619 0.110341 0.213729 1.2545 0.521555 1.23648 1.33824 1.04895 0.984429 0.833134 0.804394 2.10631 1.91607 1.43938 2.11503 0.557148 1.0978 2.5514 1.99191 0.567871 0.413026 0.821007 1.14792 0.659226 0.579869 0.964171 0.668511 1.59376 2.01482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top