TCONS_00000285 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000285
Unique NameTCONS_00000285
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000285 ID=TCONS_00000285|Name=TCONS_00000285|organism=Clytia hemisphaerica|type=transcript|length=346bp
AGGAAATCATAATGGCTAGCAATTCAACGAACTCTGCTCTTCAGACATCC
AATCTACTTAATGGTATATTCACAAgcattttgtccgtttttgggACAAT
ATTCAACGcatacattattcaacatttttataagaagctcTCATCTTcac
aaaaacgaaaaaatatcaacacttTAATGCTTGGACAATCCATAGTTGAT
TTCTATAATTCGGCATTCGCTGGGCCATCaaatgcagtttactattttgG
AAGCTACCGTTATGGAAATGATTATGAAAAGACATTGTATTTTAAATTGA
TTGATATTATTTCACCAAGTTTATACGTGACGTCACTGCAAATTAG
Run BLAST on NCBI

protein sequence of TCONS_00000285-protein

>TCONS_00000285-protein ID=TCONS_00000285-protein|Name=TCONS_00000285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
EIIMASNSTNSALQTSNLLNGIFTSILSVFGTIFNAYIIQHFYKKLSSSQ
KRKNINTLMLGQSIVDFYNSAFAGPSNAVYYFGSYRYGNDYEKTLYFKLI
DIISPSLYVTSLQI
Run BLAST on NCBI

transcript from alignment at sc0000001:385034..385379

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000285 ID=TCONS_00000285|Name=TCONS_00000285|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at sc0000001:385034..385379 (Clytia hemisphaerica)
CTAATTTGCAGTGACGTCACGTATAAACTTGGTGAAATAATATCAATCAA
TTTAAAATACAATGTCTTTTCATAATCATTTCCATAACGGTAGCTTCcaa
aatagtaaactgcatttGATGGCCCAGCGAATGCCGAATTATAGAAATCA
ACTATGGATTGTCCAAGCATTAaagtgttgatattttttcgtttttgtgA
AGATGAgagcttcttataaaaatgttgaataatgtatgCGTTGAATATTG
TcccaaaaacggacaaaatgcTTGTGAATATACCATTAAGTAGATTGGAT
GTCTGAAGAGCAGAGTTCGTTGAATTGCTAGCCATTATGATTTCCT

Coding sequence (CDS) from alignment at sc0000001:385034..385379

>TCONS_00000285 ID=TCONS_00000285|Name=TCONS_00000285|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0000001:385034..385379 (Clytia hemisphaerica)
AATTTGCAGTGACGTCACGTATAAACTTGGTGAAATAATATCAATCAATT
TAAAATACAATGTCTTTTCATAATCATTTCCATAACGGTAGCTTCcaaaa
tagtaaactgcatttGATGGCCCAGCGAATGCCGAATTATAGAAATCAAC
TATGGATTGTCCAAGCATTAaagtgttgatattttttcgtttttgtgAAG
ATGAgagcttcttataaaaatgttgaataatgtatgCGTTGAATATTGTc
ccaaaaacggacaaaatgcTTGTGAATATACCATTAAGTAGATTGGATGT
CTGAAGAGCAGAGTTCGTTGAATTGCTAGCCATTATGATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000160XLOC_000160Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000285-proteinTCONS_00000285-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000285-exon-sc0000001-1491911889:385034..385379TCONS_00000285-exon-sc0000001-1491911889:385034..385379Clytia hemisphaericaexon
TCONS_00000285-exon-sc0000001-1510915933:385034..385379TCONS_00000285-exon-sc0000001-1510915933:385034..385379Clytia hemisphaericaexon
TCONS_00000285-exon-sc0000001-1575043694:385034..385379TCONS_00000285-exon-sc0000001-1575043694:385034..385379Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:385034..385379 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.517922	0.252528	0	0	0	0	0	0	0	0.540605	0	0	0.688907	0.178859	0.588186	0.789017	0.777604	0	0.550562	0	0.250378	0.366377	0	0.269943	0.278035	0	0.355087	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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