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TCONS_00000284 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000284
Unique NameTCONS_00000284
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1738

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000284 ID=TCONS_00000284|Name=TCONS_00000284|organism=Clytia hemisphaerica|type=transcript|length=1738bp
ttaaagggacattacagtagtaaaatgtaaacattgcgtgaaccacgtgt
cattaaaaagaacaattaaaatcacgtgtccaaaacaaacttgtaaaaca
attgaacaattaaaattagccatatttggtttgattttttattttgacat
gtgacatttgttttgattttgtatccgctgcatacagtttgtttacaaat
ttcgcaagtactgttatgtccctttaagtaaatcggtaaaatcacgaaga
cgaacgaaaatttaacaggctagtgagtttcaaccaatcaaatttcgtat
ttccactagcctattacatttttcgtccgtcgtcgtgattatcttggtat
gcttaacctcagtaataTCTACAAATATAGCGCAAGAAACTTCAACATTC
ATTTGAAACTCTCAATTTCCTGTtgtccactgacctttatattcTCTGGA
CACTCAATCTGTTTCTCGATATCCTGGCCAAGCAGAATCTTTGATAGCag
atttttgaaagtggtaccctaattgTAGCATTTCTCAGTGTTGGTGAGCA
AAGCTTTAAAAGGATTATTTCATTGAATTACAAATTGAGCTACATTGAAT
AGTTCTACTATTAGGGTGTACCACTCTTCTAAAAACTCGAATCGAAAATG
GGTGATATTTTTTGGTATATAAAGATCAGTGCTATACattcaactctctc
taattcgaaccgcAATCACAGAACTTATTGGAGATTATATATTAAGCTAT
CTTTTATGGTTGCATTTCAGCCTTAAAATTTCTGTGTCGCGATGTTAAta
tgctaattttttttttttttaatgtcaaaaGCTAACCCGGATTTTGAAGA
AGTTTGGGTAGTTAGTTGTGTTCTAGGACTTTATCCacaatttttattgt
tcatttAATTGTCAATTTACTtcgaaaaatgttttaccaGATTGATTTCC
TCATCATTCAAAATGGTGTCAATTCTTTGGTTTTAccttcaaaaagttta
aaaaattgtcCAATTAAAACATACTTcaagacacccctgtgtcacagacc
cgctgggaccctagccccactggaaaatttggctgggaaattgactttga
tttcatccccactcacAAATGATtgtctaaaaattgcactccaaaactat
ccccactggattttttaaccttggaaagaaacttttattttatccccatt
gaaatttcaatagGGATTTTTATCCATACAgtactgaagaaaaaagttcc
accggggctgtgagacaggggtgtttaaaggGCGTTGTCGTTGCATACTC
GAATATAAAGGTGAACCGAAATCACCAAACCTCCTTTATTTTACCAgcaa
ccaatcaaattccagTATCATTTCCCTTTGCCATCTGCATTATTATTACC
ATCATTGATAGCTAATTTACTCATAAGTTCAGCCTCAAGTtcagttttct
tttcacttgttaTATCTACTGTTGCATTGTTATCAGTAATTAATGCATTG
CGACGTCCTTTTCTTTCTGAgcatgaaaattctttttccaatTGTTCTTT
ATTAATTTCAGCAACTGCTGTCGCCATCTTCTTTTTTGTATTCCTTTGTC
TTTTCTCTTGAAAATTCAGTAATCGTATATTTTTATCGTTAGCGCATGCG
TAATACAATATTCATGTGCGTCGATAGGTACATAAAAGTCCAACTTTAGG
TTatctattttgtatttttttagcaCAAAAGATTTCTG
Run BLAST on NCBI

transcript from alignment at sc0000001:309863..311600

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000284 ID=TCONS_00000284|Name=TCONS_00000284|organism=Clytia hemisphaerica|type=transcript|length=1738bp|location=Sequence derived from alignment at sc0000001:309863..311600 (Clytia hemisphaerica)
CAGAAATCTTTTGtgctaaaaaaatacaaaatagatAACCTAAAGTTGGA CTTTTATGTACCTATCGACGCACATGAATATTGTATTACGCATGCGCTAA CGATAAAAATATACGATTACTGAATTTTCAAGAGAAAAGACAAAGGAATA CAAAAAAGAAGATGGCGACAGCAGTTGCTGAAATTAATAAAGAACAattg gaaaaagaattttcatgcTCAGAAAGAAAAGGACGTCGCAATGCATTAAT TACTGATAACAATGCAACAGTAGATAtaacaagtgaaaagaaaactgaAC TTGAGGCTGAACTTATGAGTAAATTAGCTATCAATGATGGTAATAATAAT GCAGATGGCAAAGGGAAATGATActggaatttgattggttgcTGGTAAAA TAAAGGAGGTTTGGTGATTTCGGTTCACCTTTATATTCGAGTATGCAACG ACAACGCcctttaaacacccctgtctcacagccccggtggaacttttttc ttcagtacTGTATGGATAAAAATCCctattgaaatttcaatggggataaa ataaaagtttctttccaaggttaaaaaatccagtggggatagttttggag tgcaatttttagacaATCATTTgtgagtggggatgaaatcaaagtcaatt tcccagccaaattttccagtggggctagggtcccagcgggtctgtgacac aggggtgtcttgAAGTATGTTTTAATTGgacaattttttaaactttttga aggTAAAACCAAAGAATTGACACCATTTTGAATGATGAGGAAATCAATCt ggtaaaacatttttcgaAGTAAATTGACAATTaaatgaacaataaaaatt gtGGATAAAGTCCTAGAACACAACTAACTACCCAAACTTCTTCAAAATCC GGGTTAGCttttgacattaaaaaaaaaaaaaattagcataTTAACATCGC GACACAGAAATTTTAAGGCTGAAATGCAACCATAAAAGATAGCTTAATAT ATAATCTCCAATAAGTTCTGTGATTgcggttcgaattagagagagttgaa tGTATAGCACTGATCTTTATATACCAAAAAATATCACCCATTTTCGATTC GAGTTTTTAGAAGAGTGGTACACCCTAATAGTAGAACTATTCAATGTAGC TCAATTTGTAATTCAATGAAATAATCCTTTTAAAGCTTTGCTCACCAACA CTGAGAAATGCTAcaattagggtaccactttcaaaaatctGCTATCAAAG ATTCTGCTTGGCCAGGATATCGAGAAACAGATTGAGTGTCCAGAgaatat aaaggtcagtggacaACAGGAAATTGAGAGTTTCAAATGAATGTTGAAGT TTCTTGCGCTATATTTGTAGAtattactgaggttaagcataccaagataa tcacgacgacggacgaaaaatgtaataggctagtggaaatacgaaatttg attggttgaaactcactagcctgttaaattttcgttcgtcttcgtgattt taccgatttacttaaagggacataacagtacttgcgaaatttgtaaacaa actgtatgcagcggatacaaaatcaaaacaaatgtcacatgtcaaaataa aaaatcaaaccaaatatggctaattttaattgttcaattgttttacaagt ttgttttggacacgtgattttaattgttctttttaatgacacgtggttca cgcaatgtttacattttactactgtaatgtccctttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000159XLOC_000159Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000284-exon-sc0000001-1491911889:309863..311600TCONS_00000284-exon-sc0000001-1491911889:309863..311600Clytia hemisphaericaexon
TCONS_00000284-exon-sc0000001-1510915933:309863..311600TCONS_00000284-exon-sc0000001-1510915933:309863..311600Clytia hemisphaericaexon
TCONS_00000284-exon-sc0000001-1575043694:309863..311600TCONS_00000284-exon-sc0000001-1575043694:309863..311600Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:309863..311600 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.48757 0.854647 0.703458 0.968881 6.16204 4.99774 17.6514 18.5865 7.75446 7.86052 4.49635 4.08032 3.41204 2.0336 0.900297 0.567467 1.03167 0.874033 2.16485 4.07567 1.43849 1.24404 1.01626 0.768782 1.75784 2.29044 1.83985 2.31232 0.667001 0.637288
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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