TCONS_00000283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000283
Unique NameTCONS_00000283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000283 ID=TCONS_00000283|Name=TCONS_00000283|organism=Clytia hemisphaerica|type=transcript|length=878bp
NNTCCAGTATCATTTCCCTTTGCCATCTGCATTATTATTACCATCATTGA
TAGCTAATTTACTCATAAGTTCAGCCTCAAGTtcagttttcttttcactt
gttaTATCTACTGTTGCATTGTTATCAGTAATTAATGCATTGCGACGTCC
TTTTCTTTCTGAgcatgaaaattctttttccaatTGTTCTTTATTAATTT
CAGCAACTGCTGTCGCCATCTTCTTTTTTGTATTCCTTTGTCTTTTCTCT
TGAAAATTCAGTAATCGTATATTTTTATCGTTAGCGCATGCGTAATACAA
TATTCATGTGCGTCGATAGGTACATAAAAGTCCAACTTTACGTTatctat
tttgtatttttttagcaCGAAAGATTTCTGTGTACACGTTTATTTTTTGA
GTTCGATATTATCTTTATCAGTGAAATTCTATATTGGAGGATTATATTTG
AAAATGCGGTAACACAATTCGCGTCTTTATCTTCTTAACCAACCACCAAC
AAATATTTTCTAACGAATCGatacaattttaatttttgagcaatGATATA
TGGTATACTTGTCGTTTTCGAGTTTTCAAGGTCCCAGAATGATATCTATT
TTACACCTATTTTACTGATACAAAAATCCTCTAGTATGTCTTTTTAACGA
TTGATACAACTTTACTTTTTCGAGCAATAATAGATAGTATACTTGTCGTT
ATCGAATTTTCAAGGTCCCAGAATAATATCAATTTTGCTCCTCTTTTCCG
ATACAAAAATCGTGTAATATGTTTCTCTAGTGAATCTTCTCTTTataaat
ttttctatttctcttttaccttgaccTTTATTCCTCtgttcaaaattgtt
ttttcaattttttcttccttcttcttct
Run BLAST on NCBI

transcript from alignment at sc0000001:308878..309755

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000283 ID=TCONS_00000283|Name=TCONS_00000283|organism=Clytia hemisphaerica|type=transcript|length=878bp|location=Sequence derived from alignment at sc0000001:308878..309755 (Clytia hemisphaerica)
agaagaagaaggaagaaaaaattgaaaaaacaattttgaacaGAGGAATA
AAggtcaaggtaaaagagaaatagaaaaatttatAAAGAGAAGATTCACT
AGAGAAACATATTACACGATTTTTGTATCGGAAAAGAGGAGCAAAATTGA
TATTATTCTGGGACCTTGAAAATTCGATAACGACAAGTATACTATCTATT
ATTGCTCGAAAAAGTAAAGTTGTATCAATCGTTAAAAAGACATACTAGAG
GATTTTTGTATCAGTAAAATAGGTGTAAAATAGATATCATTCTGGGACCT
TGAAAACTCGAAAACGACAAGTATACCATATATCattgctcaaaaattaa
aattgtatCGATTCGTTAGAAAATATTTGTTGGTGGTTGGTTAAGAAGAT
AAAGACGCGAATTGTGTTACCGCATTTTCAAATATAATCCTCCAATATAG
AATTTCACTGATAAAGATAATATCGAACTCAAAAAATAAACGTGTACACA
GAAATCTTTCGtgctaaaaaaatacaaaatagatAACGTAAAGTTGGACT
TTTATGTACCTATCGACGCACATGAATATTGTATTACGCATGCGCTAACG
ATAAAAATATACGATTACTGAATTTTCAAGAGAAAAGACAAAGGAATACA
AAAAAGAAGATGGCGACAGCAGTTGCTGAAATTAATAAAGAACAattgga
aaaagaattttcatgcTCAGAAAGAAAAGGACGTCGCAATGCATTAATTA
CTGATAACAATGCAACAGTAGATAtaacaagtgaaaagaaaactgaACTT
GAGGCTGAACTTATGAGTAAATTAGCTATCAATGATGGTAATAATAATGC
AGATGGCAAAGGGAAATGATACTGGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000158XLOC_000158Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000283-exon-sc0000001-1491911889:308878..309755TCONS_00000283-exon-sc0000001-1491911889:308878..309755Clytia hemisphaericaexon
TCONS_00000283-exon-sc0000001-1510915933:308878..309755TCONS_00000283-exon-sc0000001-1510915933:308878..309755Clytia hemisphaericaexon
TCONS_00000283-exon-sc0000001-1575043694:308878..309755TCONS_00000283-exon-sc0000001-1575043694:308878..309755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:308878..309755 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.720028	0.914631	1.37665	0.572326	7.5583	4.47839	28.3854	24.7842	7.43831	6.65176	3.1988	3.99502	1.70438	1.98812	0.588986	0.0659719	0.5814	0.255521	1.81583	1.13064	1.09446	0.462881	1.07739	1.59002	0.149598	0.847064	0	0	0.20417	0.528535
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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