Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000283
Unique NameTCONS_00000283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000283 ID=TCONS_00000283|Name=TCONS_00000283|organism=Clytia hemisphaerica|type=transcript|length=878bp
NNTCCAGTATCATTTCCCTTTGCCATCTGCATTATTATTACCATCATTGA
TAGCTAATTTACTCATAAGTTCAGCCTCAAGTtcagttttcttttcactt
gttaTATCTACTGTTGCATTGTTATCAGTAATTAATGCATTGCGACGTCC
TTTTCTTTCTGAgcatgaaaattctttttccaatTGTTCTTTATTAATTT
CAGCAACTGCTGTCGCCATCTTCTTTTTTGTATTCCTTTGTCTTTTCTCT
TGAAAATTCAGTAATCGTATATTTTTATCGTTAGCGCATGCGTAATACAA
TATTCATGTGCGTCGATAGGTACATAAAAGTCCAACTTTACGTTatctat
tttgtatttttttagcaCGAAAGATTTCTGTGTACACGTTTATTTTTTGA
GTTCGATATTATCTTTATCAGTGAAATTCTATATTGGAGGATTATATTTG
AAAATGCGGTAACACAATTCGCGTCTTTATCTTCTTAACCAACCACCAAC
AAATATTTTCTAACGAATCGatacaattttaatttttgagcaatGATATA
TGGTATACTTGTCGTTTTCGAGTTTTCAAGGTCCCAGAATGATATCTATT
TTACACCTATTTTACTGATACAAAAATCCTCTAGTATGTCTTTTTAACGA
TTGATACAACTTTACTTTTTCGAGCAATAATAGATAGTATACTTGTCGTT
ATCGAATTTTCAAGGTCCCAGAATAATATCAATTTTGCTCCTCTTTTCCG
ATACAAAAATCGTGTAATATGTTTCTCTAGTGAATCTTCTCTTTataaat
ttttctatttctcttttaccttgaccTTTATTCCTCtgttcaaaattgtt
ttttcaattttttcttccttcttcttct
Run BLAST on NCBI

transcript from alignment at sc0000001:308878..309755

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000283 ID=TCONS_00000283|Name=TCONS_00000283|organism=Clytia hemisphaerica|type=transcript|length=878bp|location=Sequence derived from alignment at sc0000001:308878..309755 (Clytia hemisphaerica)
agaagaagaaggaagaaaaaattgaaaaaacaattttgaacaGAGGAATA AAggtcaaggtaaaagagaaatagaaaaatttatAAAGAGAAGATTCACT AGAGAAACATATTACACGATTTTTGTATCGGAAAAGAGGAGCAAAATTGA TATTATTCTGGGACCTTGAAAATTCGATAACGACAAGTATACTATCTATT ATTGCTCGAAAAAGTAAAGTTGTATCAATCGTTAAAAAGACATACTAGAG GATTTTTGTATCAGTAAAATAGGTGTAAAATAGATATCATTCTGGGACCT TGAAAACTCGAAAACGACAAGTATACCATATATCattgctcaaaaattaa aattgtatCGATTCGTTAGAAAATATTTGTTGGTGGTTGGTTAAGAAGAT AAAGACGCGAATTGTGTTACCGCATTTTCAAATATAATCCTCCAATATAG AATTTCACTGATAAAGATAATATCGAACTCAAAAAATAAACGTGTACACA GAAATCTTTCGtgctaaaaaaatacaaaatagatAACGTAAAGTTGGACT TTTATGTACCTATCGACGCACATGAATATTGTATTACGCATGCGCTAACG ATAAAAATATACGATTACTGAATTTTCAAGAGAAAAGACAAAGGAATACA AAAAAGAAGATGGCGACAGCAGTTGCTGAAATTAATAAAGAACAattgga aaaagaattttcatgcTCAGAAAGAAAAGGACGTCGCAATGCATTAATTA CTGATAACAATGCAACAGTAGATAtaacaagtgaaaagaaaactgaACTT GAGGCTGAACTTATGAGTAAATTAGCTATCAATGATGGTAATAATAATGC AGATGGCAAAGGGAAATGATACTGGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000158XLOC_000158Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000283-exon-sc0000001-1491911889:308878..309755TCONS_00000283-exon-sc0000001-1491911889:308878..309755Clytia hemisphaericaexon
TCONS_00000283-exon-sc0000001-1510915933:308878..309755TCONS_00000283-exon-sc0000001-1510915933:308878..309755Clytia hemisphaericaexon
TCONS_00000283-exon-sc0000001-1575043694:308878..309755TCONS_00000283-exon-sc0000001-1575043694:308878..309755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:308878..309755 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.720028 0.914631 1.37665 0.572326 7.5583 4.47839 28.3854 24.7842 7.43831 6.65176 3.1988 3.99502 1.70438 1.98812 0.588986 0.0659719 0.5814 0.255521 1.81583 1.13064 1.09446 0.462881 1.07739 1.59002 0.149598 0.847064 0 0 0.20417 0.528535
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top