TCONS_00000281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000281
Unique NameTCONS_00000281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000281 ID=TCONS_00000281|Name=TCONS_00000281|organism=Clytia hemisphaerica|type=transcript|length=301bp
ACCAAAACAATTTAACTGTAAATTTTTAGACACTTAGCACCATTTTTGTA
TTGTTATTTATACACATGCGTATTTTAGAAAACAGTAAAGAATTTTTGAT
ATAGTTTCCAAACAGCTTGTTGAAGGTCTAAACAGAAGTATTCTGTCACA
AGTTATACTTTTAATAATATTTATACAATTAAAGCTAtaatatttgataa
attttaaaatttttgctcTAAGTTACTTCTGGATCGTAGAATTTTAGCTC
TGAGTTTTTTATGGATTCATGACTTTGGACGTTaggaaaaatgttccaat
a
Run BLAST on NCBI

transcript from alignment at sc0000001:287342..287642

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000281 ID=TCONS_00000281|Name=TCONS_00000281|organism=Clytia hemisphaerica|type=transcript|length=301bp|location=Sequence derived from alignment at sc0000001:287342..287642 (Clytia hemisphaerica)
tattggaacatttttcctAACGTCCAAAGTCATGAATCCATAAAAAACTC
AGAGCTAAAATTCTACGATCCAGAAGTAACTTAgagcaaaaattttaaaa
tttatcaaatattaTAGCTTTAATTGTATAAATATTATTAAAAGTATAAC
TTGTGACAGAATACTTCTGTTTAGACCTTCAACAAGCTGTTTGGAAACTA
TATCAAAAATTCTTTACTGTTTTCTAAAATACGCATGTGTATAAATAACA
ATACAAAAATGGTGCTAAGTGTCTAAAAATTTACAGTTAAATTGTTTTGG
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000156XLOC_000156Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000281-exon-sc0000001-1491911889:287342..287642TCONS_00000281-exon-sc0000001-1491911889:287342..287642Clytia hemisphaericaexon
TCONS_00000281-exon-sc0000001-1510915933:287342..287642TCONS_00000281-exon-sc0000001-1510915933:287342..287642Clytia hemisphaericaexon
TCONS_00000281-exon-sc0000001-1575043694:287342..287642TCONS_00000281-exon-sc0000001-1575043694:287342..287642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:287342..287642 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.54753	4.88255	3.48868	10.2394	1.03879	0	0	0	2.2719	8.84437	3.90207	0.769521	3.0738	1.8621	0.656101	1.40819	1.73478	0.592697	0	0.42843	0.372384	0	1.32481	1.60593	0	0	4.75304	2.25448	20.0918	8.71079
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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