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TCONS_00000281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000281
Unique NameTCONS_00000281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000281 ID=TCONS_00000281|Name=TCONS_00000281|organism=Clytia hemisphaerica|type=transcript|length=301bp
ACCAAAACAATTTAACTGTAAATTTTTAGACACTTAGCACCATTTTTGTA
TTGTTATTTATACACATGCGTATTTTAGAAAACAGTAAAGAATTTTTGAT
ATAGTTTCCAAACAGCTTGTTGAAGGTCTAAACAGAAGTATTCTGTCACA
AGTTATACTTTTAATAATATTTATACAATTAAAGCTAtaatatttgataa
attttaaaatttttgctcTAAGTTACTTCTGGATCGTAGAATTTTAGCTC
TGAGTTTTTTATGGATTCATGACTTTGGACGTTaggaaaaatgttccaat
a
Run BLAST on NCBI

transcript from alignment at sc0000001:287342..287642

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000281 ID=TCONS_00000281|Name=TCONS_00000281|organism=Clytia hemisphaerica|type=transcript|length=301bp|location=Sequence derived from alignment at sc0000001:287342..287642 (Clytia hemisphaerica)
tattggaacatttttcctAACGTCCAAAGTCATGAATCCATAAAAAACTC AGAGCTAAAATTCTACGATCCAGAAGTAACTTAgagcaaaaattttaaaa tttatcaaatattaTAGCTTTAATTGTATAAATATTATTAAAAGTATAAC TTGTGACAGAATACTTCTGTTTAGACCTTCAACAAGCTGTTTGGAAACTA TATCAAAAATTCTTTACTGTTTTCTAAAATACGCATGTGTATAAATAACA ATACAAAAATGGTGCTAAGTGTCTAAAAATTTACAGTTAAATTGTTTTGG T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000156XLOC_000156Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000281-exon-sc0000001-1491911889:287342..287642TCONS_00000281-exon-sc0000001-1491911889:287342..287642Clytia hemisphaericaexon
TCONS_00000281-exon-sc0000001-1510915933:287342..287642TCONS_00000281-exon-sc0000001-1510915933:287342..287642Clytia hemisphaericaexon
TCONS_00000281-exon-sc0000001-1575043694:287342..287642TCONS_00000281-exon-sc0000001-1575043694:287342..287642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:287342..287642 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.54753 4.88255 3.48868 10.2394 1.03879 0 0 0 2.2719 8.84437 3.90207 0.769521 3.0738 1.8621 0.656101 1.40819 1.73478 0.592697 0 0.42843 0.372384 0 1.32481 1.60593 0 0 4.75304 2.25448 20.0918 8.71079
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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