TCONS_00000280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000280
Unique NameTCONS_00000280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000280 ID=TCONS_00000280|Name=TCONS_00000280|organism=Clytia hemisphaerica|type=transcript|length=2591bp
GAATCACGGATTCATGAATTGGATGTATTGTTTTTCAATGCCGAGATTTT
AACATAATATGTGAAACAATTTCAAGCAGTTTCTTTATGAAATTGATGTA
ATGATGAAACCACACAACATGTTTTATAGTAACAAATAGTAAAGAGATGA
ATTTTTGGTCATGTGCTCTTTTGTTTTTTGAAGTGTTTTGGATGAAAGAA
GAGTGGGGTTACTTTCGTGTTATTTTTGCATGTTACAATTGTTTCTTGCT
AAACGGGGTTTTCCGTTTATGGAAATCAATACCCATATAAAAAATGAGTA
TGCACATTTAGACCTTTTGTAGGATGTGATAGATCCCGggttataaagcc
cgaagggctagatgtcgtgctttggctgaaaagtgtgccgaggttaggta
ggaaatcgtTATGGTACGGGTGGGTACTTCCAAAGTCTTACGAGGGGCTG
GAAAAATCAGAATATCAAAATTAAGGACCAAATATGACTTTGCTTTAGCC
AAAGGTGAGAAAATAGTTTTTGAAGTAGGAGcttctaaaaaaacaaaata
aatgtttgTTGATTTTCGTCGTATAAAAAGCTCTTTCTAACTTTGCTTAG
CTGGACAGGCCTGGACAGGCCCCTTGCTCATCACGACGTAGTTTTTCAAG
CAGGGTTATccattgaaatattttgaagttgATCAAGTGTGGATTGAGGC
CTTCCACGTGGTCGTCGGTGAAAAtgttcgtcggggaaaaatattcgtca
cttagccaaaatttcgtcacttttccccgacgaagtaaTGACCAACATGA
TGAATATGACCAAACCACAAGGGTCTATCTCCATTGAGATTTCGATAGAA
CTGTTTAAATTATCATCaaagctgtgagacagggataaTCTAATCAGGGG
TGTCTTTAACACTAACCACTGTCTTTAACGATAACTTAACCATCGATTAA
AGGAGGAGTATATAGGGCTTTGAAAACCctttttcagtcaaaattttggc
tgaatcccggaacaccaaaattggaaaaaaataataaaatgcaCCGCCAC
ATCGGTTTATAAAGGTTATTAAAATACCGGAAtactgacaaaaaataagg
ctaatCACCATCACTGTCTGATTTTAAGATACCGTTTTATTAACATCTCT
TTTTTCGTTCAATCctgtaataccgtactaaaaaactAAGGGCCGACACC
CCCTTAAACAACcttctgaaattttcactggGTCATTGAGATAGGGGTGT
CTTTTAATTCAAAGGTCAAGTCATGAATGGATGAATAATTTCTCTCGTGA
CGttttatatttgaattttttccatGACTTTGCGAAAATCCTTTGTCAGA
CTATGCTTAGCCAAAATGACCCCAAACAAAGCTCTATAAGAGACTCATAG
AAGGGCTATTACGAAGGGGATCGATGTGTTAAGGCGTTtgtatatacacg
tttttttacaagaacatacAAAATTAATAAAGCTTTCGAGTGCTGgtaag
tttttgacttttcagcctaaaaatatttttaaaatgttcgaCCCCTGTGC
CCAACTGAAAATTCGGCCAAAatctcgtccccggtgggaagaatacccta
caattttatccccactgagtaattgatttgatttcatccccattaaGAAT
TGCACTCCcaaaccatcccactggattcTTTAACctaggaacaatagaat
ttttatccccgttgGGTTTTTAATGGAAAATTTTGTCCTACTGTGGGTAA
AAAGTTTCACCGGTGCTGTGAGGAAGGGGTGTTTGTGAGTATTTTAGTGC
AATTTCCCAAGAAAttgtccgcgaagccttaaacattcttaattttttta
tcatggAAGCCTTAAGCTCTtatattgtttgttcttatgtagacgatgtt
atcgtccgttacagtgataataaaggcgggaaaaatggcggtgtggcgtt
atggcggtatacggaaaaaaatcggcgggagagtttcgccACACTAGACA
ATGATATCGTCCGTTTAGAGGTCAGTAAACGCaggaaagagttagggcgt
cagggcggtttacgggaaaaaagtggcggtagagtttggaacaaacactg
taaacatctccgccactgcttactcactcccgaatttatcacgcctctcc
taaactattcccttttttagtgatcttgtgtagacgataggatcgtctag
ttCTTATGTAACTTGGACGTTAGCAAATTTATTTGGTATGAATGTGAAAG
AATTTTTTCTGGTTTTTCAAACATTAAAACTCAGATAAATCGATAAATGA
AGCATAGAAGAATGAGAAAAAAGGGGTTAAAAACGGGGAAAATATGTTTG
CTTTCACACAACATAaggaaatttcattttcttcttcgtatTTCTTTTCG
TTTGTAGAGTTGTTCTGTTTTGAACTTTAATGCATGACCTCACCATGAGA
tttggtttgaaatattttttctttaagaGAAATGAGCTTTCTCTGTCTAG
TAAAAGGCAAAAGATTTGTTTTAAAGTCACAATATAAGCTGCATAGTAGG
GGATTTCATTTTTACACTATAGGAAAAAGCTTTTCTTCCAG
Run BLAST on NCBI

transcript from alignment at sc0000001:265890..268480

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000280 ID=TCONS_00000280|Name=TCONS_00000280|organism=Clytia hemisphaerica|type=transcript|length=2591bp|location=Sequence derived from alignment at sc0000001:265890..268480 (Clytia hemisphaerica)
CTGGAAGAAAAGCTTTTTCCTATAGTGTAAAAATGAAATCCCCTACTATG CAGCTTATATTGTGACTTTAAAACAAATCTTTTGCCTTTTACTAGACAGA GAAAGCTCATTTCtcttaaagaaaaaatatttcaaaccaaaTCTCATGGT GAGGTCATGCATTAAAGTTCAAAACAGAACAACTCTACAAACGAAAAGAA atacgaagaagaaaatgaaatttcctTATGTTGTGTGAAAGCAAACATAT TTTCCCCGTTTTTAACCCCTTTTTTCTCATTCTTCTATGCTTCATTTATC GATTTATCTGAGTTTTAATGTTTGAAAAACCAGAAAAAATTCTTTCACAT TCATACCAAATAAATTTGCTAACGTCCAAGTTACATAAGaactagacgat cctatcgtctacacaagatcactaaaaaagggaatagtttaggagaggcg tgataaattcgggagtgagtaagcagtggcggagatgtttacagtgtttg ttccaaactctaccgccacttttttcccgtaaaccgccctgacgccctaa ctctttcctGCGTTTACTGACCTCTAAACGGACGATATCATTGTCTAGTG Tggcgaaactctcccgccgatttttttccgtataccgccataacgccaca ccgccatttttcccgcctttattatcactgtaacggacgataacatcgtc tacataagaacaaacaatataAGAGCTTAAGGCTTccatgataaaaaaat taagaatgtttaaggcttcgcggacaaTTTCTTGGGAAATTGCACTAAAA TACTCACAAACACCCCTTCCTCACAGCACCGGTGAAACTTTTTACCCACA GTAGGACAAAATTTTCCATTAAAAACCcaacggggataaaaattctattg ttcctagGTTAAAgaatccagtgggatggtttgGGAGTGCAATTCttaat ggggatgaaatcaaatcaattactcagtggggataaaattgtagggtatt cttcccaccggggacgagatTTTGGCCGAATTTTCAGTTGGGCACAGGGG tcgaacattttaaaaatatttttaggctgaaaagtcaaaaacttacCAGC ACTCGAAAGCTTTATTAATTTTgtatgttcttgtaaaaaaacgtgtatat acaAACGCCTTAACACATCGATCCCCTTCGTAATAGCCCTTCTATGAGTC TCTTATAGAGCTTTGTTTGGGGTCATTTTGGCTAAGCATAGTCTGACAAA GGATTTTCGCAAAGTCatggaaaaaattcaaatataaaaCGTCACGAGAG AAATTATTCATCCATTCATGACTTGACCTTTGAATTAAAAGACACCCCTA TCTCAATGACccagtgaaaatttcagaagGTTGTTTAAGGGGGTGTCGGC CCTTagttttttagtacggtattacagGATTGAACGAAAAAAGAGATGTT AATAAAACGGTATCTTAAAATCAGACAGTGATGGTGattagccttatttt ttgtcagtaTTCCGGTATTTTAATAACCTTTATAAACCGATGTGGCGGtg cattttattatttttttccaattttggtgttccgggattcagccaaaatt ttgactgaaaaagGGTTTTCAAAGCCCTATATACTCCTCCTTTAATCGAT GGTTAAGTTATCGTTAAAGACAGTGGTTAGTGTTAAAGACACCCCTGATT AGAttatccctgtctcacagctttGATGATAATTTAAACAGTTCTATCGA AATCTCAATGGAGATAGACCCTTGTGGTTTGGTCATATTCATCATGTTGG TCAttacttcgtcggggaaaagtgacgaaattttggctaagtgacgaata tttttccccgacgaacaTTTTCACCGACGACCACGTGGAAGGCCTCAATC CACACTTGATcaacttcaaaatatttcaatggATAACCCTGCTTGAAAAA CTACGTCGTGATGAGCAAGGGGCCTGTCCAGGCCTGTCCAGCTAAGCAAA GTTAGAAAGAGCTTTTTATACGACGAAAATCAAcaaacatttattttgtt tttttagaagCTCCTACTTCAAAAACTATTTTCTCACCTTTGGCTAAAGC AAAGTCATATTTGGTCCTTAATTTTGATATTCTGATTTTTCCAGCCCCTC GTAAGACTTTGGAAGTACCCACCCGTACCATAacgatttcctacctaacc tcggcacacttttcagccaaagcacgacatctagcccttcgggctttata accCGGGATCTATCACATCCTACAAAAGGTCTAAATGTGCATACTCATTT TTTATATGGGTATTGATTTCCATAAACGGAAAACCCCGTTTAGCAAGAAA CAATTGTAACATGCAAAAATAACACGAAAGTAACCCCACTCTTCTTTCAT CCAAAACACTTCAAAAAACAAAAGAGCACATGACCAAAAATTCATCTCTT TACTATTTGTTACTATAAAACATGTTGTGTGGTTTCATCATTACATCAAT TTCATAAAGAAACTGCTTGAAATTGTTTCACATATTATGTTAAAATCTCG GCATTGAAAAACAATACATCCAATTCATGAATCCGTGATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000155XLOC_000155Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000280-exon-sc0000001-1491911889:265890..268480TCONS_00000280-exon-sc0000001-1491911889:265890..268480Clytia hemisphaericaexon
TCONS_00000280-exon-sc0000001-1510915933:265890..268480TCONS_00000280-exon-sc0000001-1510915933:265890..268480Clytia hemisphaericaexon
TCONS_00000280-exon-sc0000001-1575043694:265890..268480TCONS_00000280-exon-sc0000001-1575043694:265890..268480Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:265890..268480 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.015753 0.0154484 0.246073 0.431237 2.73078 1.7285 1.30497 1.91675 0.785028 0.756201 0.413999 0.323151 0.276535 0.289298 0.0835594 0.147812 0.14118 0.14625 0.53664 0.438322 0.075765 0.255481 0.117489 0.0900581 0.175312 0.091018 0.315167 0.16992 0.148396 0.0372703
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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