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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000280 ID=TCONS_00000280|Name=TCONS_00000280|organism=Clytia hemisphaerica|type=transcript|length=2591bp
GAATCACGGATTCATGAATTGGATGTATTGTTTTTCAATGCCGAGATTTT
AACATAATATGTGAAACAATTTCAAGCAGTTTCTTTATGAAATTGATGTA
ATGATGAAACCACACAACATGTTTTATAGTAACAAATAGTAAAGAGATGA
ATTTTTGGTCATGTGCTCTTTTGTTTTTTGAAGTGTTTTGGATGAAAGAA
GAGTGGGGTTACTTTCGTGTTATTTTTGCATGTTACAATTGTTTCTTGCT
AAACGGGGTTTTCCGTTTATGGAAATCAATACCCATATAAAAAATGAGTA
TGCACATTTAGACCTTTTGTAGGATGTGATAGATCCCGggttataaagcc
cgaagggctagatgtcgtgctttggctgaaaagtgtgccgaggttaggta
ggaaatcgtTATGGTACGGGTGGGTACTTCCAAAGTCTTACGAGGGGCTG
GAAAAATCAGAATATCAAAATTAAGGACCAAATATGACTTTGCTTTAGCC
AAAGGTGAGAAAATAGTTTTTGAAGTAGGAGcttctaaaaaaacaaaata
aatgtttgTTGATTTTCGTCGTATAAAAAGCTCTTTCTAACTTTGCTTAG
CTGGACAGGCCTGGACAGGCCCCTTGCTCATCACGACGTAGTTTTTCAAG
CAGGGTTATccattgaaatattttgaagttgATCAAGTGTGGATTGAGGC
CTTCCACGTGGTCGTCGGTGAAAAtgttcgtcggggaaaaatattcgtca
cttagccaaaatttcgtcacttttccccgacgaagtaaTGACCAACATGA
TGAATATGACCAAACCACAAGGGTCTATCTCCATTGAGATTTCGATAGAA
CTGTTTAAATTATCATCaaagctgtgagacagggataaTCTAATCAGGGG
TGTCTTTAACACTAACCACTGTCTTTAACGATAACTTAACCATCGATTAA
AGGAGGAGTATATAGGGCTTTGAAAACCctttttcagtcaaaattttggc
tgaatcccggaacaccaaaattggaaaaaaataataaaatgcaCCGCCAC
ATCGGTTTATAAAGGTTATTAAAATACCGGAAtactgacaaaaaataagg
ctaatCACCATCACTGTCTGATTTTAAGATACCGTTTTATTAACATCTCT
TTTTTCGTTCAATCctgtaataccgtactaaaaaactAAGGGCCGACACC
CCCTTAAACAACcttctgaaattttcactggGTCATTGAGATAGGGGTGT
CTTTTAATTCAAAGGTCAAGTCATGAATGGATGAATAATTTCTCTCGTGA
CGttttatatttgaattttttccatGACTTTGCGAAAATCCTTTGTCAGA
CTATGCTTAGCCAAAATGACCCCAAACAAAGCTCTATAAGAGACTCATAG
AAGGGCTATTACGAAGGGGATCGATGTGTTAAGGCGTTtgtatatacacg
tttttttacaagaacatacAAAATTAATAAAGCTTTCGAGTGCTGgtaag
tttttgacttttcagcctaaaaatatttttaaaatgttcgaCCCCTGTGC
CCAACTGAAAATTCGGCCAAAatctcgtccccggtgggaagaatacccta
caattttatccccactgagtaattgatttgatttcatccccattaaGAAT
TGCACTCCcaaaccatcccactggattcTTTAACctaggaacaatagaat
ttttatccccgttgGGTTTTTAATGGAAAATTTTGTCCTACTGTGGGTAA
AAAGTTTCACCGGTGCTGTGAGGAAGGGGTGTTTGTGAGTATTTTAGTGC
AATTTCCCAAGAAAttgtccgcgaagccttaaacattcttaattttttta
tcatggAAGCCTTAAGCTCTtatattgtttgttcttatgtagacgatgtt
atcgtccgttacagtgataataaaggcgggaaaaatggcggtgtggcgtt
atggcggtatacggaaaaaaatcggcgggagagtttcgccACACTAGACA
ATGATATCGTCCGTTTAGAGGTCAGTAAACGCaggaaagagttagggcgt
cagggcggtttacgggaaaaaagtggcggtagagtttggaacaaacactg
taaacatctccgccactgcttactcactcccgaatttatcacgcctctcc
taaactattcccttttttagtgatcttgtgtagacgataggatcgtctag
ttCTTATGTAACTTGGACGTTAGCAAATTTATTTGGTATGAATGTGAAAG
AATTTTTTCTGGTTTTTCAAACATTAAAACTCAGATAAATCGATAAATGA
AGCATAGAAGAATGAGAAAAAAGGGGTTAAAAACGGGGAAAATATGTTTG
CTTTCACACAACATAaggaaatttcattttcttcttcgtatTTCTTTTCG
TTTGTAGAGTTGTTCTGTTTTGAACTTTAATGCATGACCTCACCATGAGA
tttggtttgaaatattttttctttaagaGAAATGAGCTTTCTCTGTCTAG
TAAAAGGCAAAAGATTTGTTTTAAAGTCACAATATAAGCTGCATAGTAGG
GGATTTCATTTTTACACTATAGGAAAAAGCTTTTCTTCCAG Run BLAST on NCBI transcript from alignment at sc0000001:265890..268480 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000280 ID=TCONS_00000280|Name=TCONS_00000280|organism=Clytia hemisphaerica|type=transcript|length=2591bp|location=Sequence derived from alignment at sc0000001:265890..268480 (Clytia hemisphaerica)
CTGGAAGAAAAGCTTTTTCCTATAGTGTAAAAATGAAATCCCCTACTATG
CAGCTTATATTGTGACTTTAAAACAAATCTTTTGCCTTTTACTAGACAGA
GAAAGCTCATTTCtcttaaagaaaaaatatttcaaaccaaaTCTCATGGT
GAGGTCATGCATTAAAGTTCAAAACAGAACAACTCTACAAACGAAAAGAA
atacgaagaagaaaatgaaatttcctTATGTTGTGTGAAAGCAAACATAT
TTTCCCCGTTTTTAACCCCTTTTTTCTCATTCTTCTATGCTTCATTTATC
GATTTATCTGAGTTTTAATGTTTGAAAAACCAGAAAAAATTCTTTCACAT
TCATACCAAATAAATTTGCTAACGTCCAAGTTACATAAGaactagacgat
cctatcgtctacacaagatcactaaaaaagggaatagtttaggagaggcg
tgataaattcgggagtgagtaagcagtggcggagatgtttacagtgtttg
ttccaaactctaccgccacttttttcccgtaaaccgccctgacgccctaa
ctctttcctGCGTTTACTGACCTCTAAACGGACGATATCATTGTCTAGTG
Tggcgaaactctcccgccgatttttttccgtataccgccataacgccaca
ccgccatttttcccgcctttattatcactgtaacggacgataacatcgtc
tacataagaacaaacaatataAGAGCTTAAGGCTTccatgataaaaaaat
taagaatgtttaaggcttcgcggacaaTTTCTTGGGAAATTGCACTAAAA
TACTCACAAACACCCCTTCCTCACAGCACCGGTGAAACTTTTTACCCACA
GTAGGACAAAATTTTCCATTAAAAACCcaacggggataaaaattctattg
ttcctagGTTAAAgaatccagtgggatggtttgGGAGTGCAATTCttaat
ggggatgaaatcaaatcaattactcagtggggataaaattgtagggtatt
cttcccaccggggacgagatTTTGGCCGAATTTTCAGTTGGGCACAGGGG
tcgaacattttaaaaatatttttaggctgaaaagtcaaaaacttacCAGC
ACTCGAAAGCTTTATTAATTTTgtatgttcttgtaaaaaaacgtgtatat
acaAACGCCTTAACACATCGATCCCCTTCGTAATAGCCCTTCTATGAGTC
TCTTATAGAGCTTTGTTTGGGGTCATTTTGGCTAAGCATAGTCTGACAAA
GGATTTTCGCAAAGTCatggaaaaaattcaaatataaaaCGTCACGAGAG
AAATTATTCATCCATTCATGACTTGACCTTTGAATTAAAAGACACCCCTA
TCTCAATGACccagtgaaaatttcagaagGTTGTTTAAGGGGGTGTCGGC
CCTTagttttttagtacggtattacagGATTGAACGAAAAAAGAGATGTT
AATAAAACGGTATCTTAAAATCAGACAGTGATGGTGattagccttatttt
ttgtcagtaTTCCGGTATTTTAATAACCTTTATAAACCGATGTGGCGGtg
cattttattatttttttccaattttggtgttccgggattcagccaaaatt
ttgactgaaaaagGGTTTTCAAAGCCCTATATACTCCTCCTTTAATCGAT
GGTTAAGTTATCGTTAAAGACAGTGGTTAGTGTTAAAGACACCCCTGATT
AGAttatccctgtctcacagctttGATGATAATTTAAACAGTTCTATCGA
AATCTCAATGGAGATAGACCCTTGTGGTTTGGTCATATTCATCATGTTGG
TCAttacttcgtcggggaaaagtgacgaaattttggctaagtgacgaata
tttttccccgacgaacaTTTTCACCGACGACCACGTGGAAGGCCTCAATC
CACACTTGATcaacttcaaaatatttcaatggATAACCCTGCTTGAAAAA
CTACGTCGTGATGAGCAAGGGGCCTGTCCAGGCCTGTCCAGCTAAGCAAA
GTTAGAAAGAGCTTTTTATACGACGAAAATCAAcaaacatttattttgtt
tttttagaagCTCCTACTTCAAAAACTATTTTCTCACCTTTGGCTAAAGC
AAAGTCATATTTGGTCCTTAATTTTGATATTCTGATTTTTCCAGCCCCTC
GTAAGACTTTGGAAGTACCCACCCGTACCATAacgatttcctacctaacc
tcggcacacttttcagccaaagcacgacatctagcccttcgggctttata
accCGGGATCTATCACATCCTACAAAAGGTCTAAATGTGCATACTCATTT
TTTATATGGGTATTGATTTCCATAAACGGAAAACCCCGTTTAGCAAGAAA
CAATTGTAACATGCAAAAATAACACGAAAGTAACCCCACTCTTCTTTCAT
CCAAAACACTTCAAAAAACAAAAGAGCACATGACCAAAAATTCATCTCTT
TACTATTTGTTACTATAAAACATGTTGTGTGGTTTCATCATTACATCAAT
TTCATAAAGAAACTGCTTGAAATTGTTTCACATATTATGTTAAAATCTCG
GCATTGAAAAACAATACATCCAATTCATGAATCCGTGATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000280-exon-sc0000001-1491911889:265890..268480 | TCONS_00000280-exon-sc0000001-1491911889:265890..268480 | Clytia hemisphaerica | exon |
| TCONS_00000280-exon-sc0000001-1510915933:265890..268480 | TCONS_00000280-exon-sc0000001-1510915933:265890..268480 | Clytia hemisphaerica | exon |
| TCONS_00000280-exon-sc0000001-1575043694:265890..268480 | TCONS_00000280-exon-sc0000001-1575043694:265890..268480 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:265890..268480 . |
Blast
The following BLAST results are available for this feature:
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