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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000279 ID=TCONS_00000279|Name=TCONS_00000279|organism=Clytia hemisphaerica|type=transcript|length=2642bp
TAGAAACAAATaaacagtggagtctctataactcgaccGTAACTAAAAGA
GGGGAAATCGTTCGAGTTATGGTAACAACCCACTAAGGATGCTGTACCGT
TGTTAGATATTACACGTTTTGAATAGAACGCTTTAAATTCTTTGGCCCTT
TTGATGCGTTTTTAACATTTACGTAAGCCTAAGAATGttcctaaatgttc
ttatgttaaacattttttcacaGTATTTTTGCGCTTTTtactaagaaatt
gggtgttttagagtctgcgaagccttaaaatattcttaacttttatcCCA
TATTTGGCTATACGTCTaagccttattttcttatatagtttgttctcata
aaacaACGTGTGTAGCATTAAGCAGATTCTTTTAAAATGCTGAAAAGTTA
AGTCATCTTAGGTTTAGGAGAAGTGTGTACCACGCGTTTTGGCAGGGAAA
TACATGGCTTCCTTTCCCAACTAATAGTTCTTTTCTAGCCCTTTCGGGGg
ccgaaaattaaaaaagaatttttgaatttacGATTGATATTGCTGACTGG
TAGTCACAATATTACTATATTACTACCAGTAATTTGGGGCATGTATTATT
TACAAGTAAATATTTAACAATCCTGTCTCAAACTCCCGCATTGGAATTTT
TCGATATATCAAATGTAGTTTTTatacaggcccggcggaacaaccgttaa
aGTGGGCAGGCTGagggctcaaaatgagataaaatttgctcggaatttga
gaaaaaaatctcatttgctcaaacgtggggaggctgaagtctccccagtc
tccccactTCCGCCAGGTCTGTTATAAATGATAATATTAAGTATAGTTTC
TTACATCTTAGATTTACCTCATAAatcaaatacagttgacgctctctaat
tcgacgttctaccatgcgataggctcccttattcgatggaatttaaagtc
cccgtcaacaagaaactctcataaacgacgctcccttatttgataagctc
ccttattcgttgaaaatcaaattccccttgaagatcgaattagagagcgt
caactgtattaagTATAGGTTCTTACATCTTAGATTTAGAGGCATCCAGG
GCTAATGACCTCATAAATCAAATAGAGGGAAAGAAACGGGGATGAGGtta
tagaggtttttcatgttaTATTAAGTGGTGCAACCTCTTCTTACAGAGCC
GGTGGGGCCCGCTCCCACTGGAAATTTTTACgcaatcaaataaacaaatc
ctcactgcaaagcATTGTGCTTTTTTTTTCATCTCCACTGAAATTTCGCA
ATTCGCGATGCGTTTTTGAAAAGTGACCAAAtttaggatgcaaaatcatA
CTTACTAAAAAATtgcgatgcactttctatccTTTATTTTGATGCCTGCC
GTTATTTTTACCTCGTGGCTGAGAGAAGACGGTTTGATAATGTCAAGTAT
ATATTCTTACATTGTTAGTGATTTAGAAATCAGATTTAGAAACATCCAGC
GCTAATGATTTGATCAATCAAAAAAGGAATGAGCCATGGGAGCGAGGTTA
TAGAATCTTCTCATGTGTTGTTAAGCTACCATTATGGTAGCAAATGTTCG
TATCTGTAAAGGTGATctcttacgcaaatcgaacgttcgtttccataatg
gcggacttaCGTGACTTAACAAAACATTAGAACTCTAAACTAAGTTGAAA
GGGTAATTTTTCCTTCCTGATCTTGTAGGGTGTTGTCCAACTTTTTTCAC
ATTAAAAGAGTCGAGTACTTCACAAGGAATAATTAATTATATTCACCATA
TGCTTCACGATGATATAGTAATCAACAGTGGAGAAATTTCAACCCGATTT
TAATCGCACAGTGAAGTTATCAAAAGACTTCTAAATTGGTCCCATTGGTC
TTAATTTAGGGCAATTTCTTTTTACTCCACGGGATATATAAATCTTTATT
AAGCGTTTTCCTTCTTTTGATTTGACCAAGATAGTCATGGATGGTTTTGA
TCCCTATGTGAATATTTGTGGTTTTTAATACGCGATATTGAGGCATATAA
AACCAATATTTTAATCTTATCCAATCTCTATTTATCTTGGAGTAAAATTT
CATACTCGAACAATTTGTGGAAGATTGATAATTTTTTCGCATAAGTAAAT
CTCGCGAAATTCGGTAAGATTGATGAATTAAATTTacgtgaattttttta
ttttgggcATATATCAATATCTTTCTTCTTGAACATGAGGAGATTTCAGG
GATTTTTTAGTTGGTTTTTGGCCAATTCGCATAATTAAATTGAcgtgaaa
tcttttaaaattttgattcgcATTTGATAATTTTACtaacattttagaaa
aacagcaaGTCGCAAAGACTACGTCAAACAGTCAAACAATTCAATCTAAT
tttctaagggtcgattttcgaactttagcTCGGACATTATCTTGCAGACC
TAGTAACTCCGGCTAGATTCAAAGATGCAGTTTTTCTGGCATTTCTAAAT
CTTTGATTTCAGCTGGTAAAGCGAAAGTTCACCTGCAAAAGTTAGAGACT
AAAAAGACTTGTGTTGGTTGTTTAAATGCTAAGATTACCAtccacgtttt
tataagaacgtggaaaaattttgaagcctttgatgTTCtgag Run BLAST on NCBI transcript from alignment at sc0000001:263026..265667 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000279 ID=TCONS_00000279|Name=TCONS_00000279|organism=Clytia hemisphaerica|type=transcript|length=2642bp|location=Sequence derived from alignment at sc0000001:263026..265667 (Clytia hemisphaerica)
ctcaGAAcatcaaaggcttcaaaatttttccacgttcttataaaaacgtg
gaTGGTAATCTTAGCATTTAAACAACCAACACAAGTCTTTTTAGTCTCTA
ACTTTTGCAGGTGAACTTTCGCTTTACCAGCTGAAATCAAAGATTTAGAA
ATGCCAGAAAAACTGCATCTTTGAATCTAGCCGGAGTTACTAGGTCTGCA
AGATAATGTCCGAgctaaagttcgaaaatcgacccttagaaaATTAGATT
GAATTGTTTGACTGTTTGACGTAGTCTTTGCGACttgctgtttttctaaa
atgttaGTAAAATTATCAAATgcgaatcaaaattttaaaagatttcacgT
CAATTTAATTATGCGAATTGGCCAAAAACCAACTAAAAAATCCCTGAAAT
CTCCTCATGTTCAAGAAGAAAGATATTGATATATgcccaaaataaaaaaa
ttcacgtAAATTTAATTCATCAATCTTACCGAATTTCGCGAGATTTACTT
ATGCGAAAAAATTATCAATCTTCCACAAATTGTTCGAGTATGAAATTTTA
CTCCAAGATAAATAGAGATTGGATAAGATTAAAATATTGGTTTTATATGC
CTCAATATCGCGTATTAAAAACCACAAATATTCACATAGGGATCAAAACC
ATCCATGACTATCTTGGTCAAATCAAAAGAAGGAAAACGCTTAATAAAGA
TTTATATATCCCGTGGAGTAAAAAGAAATTGCCCTAAATTAAGACCAATG
GGACCAATTTAGAAGTCTTTTGATAACTTCACTGTGCGATTAAAATCGGG
TTGAAATTTCTCCACTGTTGATTACTATATCATCGTGAAGCATATGGTGA
ATATAATTAATTATTCCTTGTGAAGTACTCGACTCTTTTAATGTGAAAAA
AGTTGGACAACACCCTACAAGATCAGGAAGGAAAAATTACCCTTTCAACT
TAGTTTAGAGTTCTAATGTTTTGTTAAGTCACGtaagtccgccattatgg
aaacgaacgttcgatttgcgtaagagATCACCTTTACAGATACGAACATT
TGCTACCATAATGGTAGCTTAACAACACATGAGAAGATTCTATAACCTCG
CTCCCATGGCTCATTCCTTTTTTGATTGATCAAATCATTAGCGCTGGATG
TTTCTAAATCTGATTTCTAAATCACTAACAATGTAAGAATATATACTTGA
CATTATCAAACCGTCTTCTCTCAGCCACGAGGTAAAAATAACGGCAGGCA
TCAAAATAAAggatagaaagtgcatcgcaATTTTTTAGTAAGTatgattt
tgcatcctaaaTTTGGTCACTTTTCAAAAACGCATCGCGAATTGCGAAAT
TTCAGTGGAGATGAAAAAAAAAGCACAATgctttgcagtgaggatttgtt
tatttgattgcGTAAAAATTTCCAGTGGGAGCGGGCCCCACCGGCTCTGT
AAGAAGAGGTTGCACCACTTAATAtaacatgaaaaacctctataaCCTCA
TCCCCGTTTCTTTCCCTCTATTTGATTTATGAGGTCATTAGCCCTGGATG
CCTCTAAATCTAAGATGTAAGAACCTATActtaatacagttgacgctctc
taattcgatcttcaaggggaatttgattttcaacgaataagggagcttat
caaataagggagcgtcgtttatgagagtttcttgttgacggggactttaa
attccatcgaataagggagcctatcgcatggtagaacgtcgaattagaga
gcgtcaactgtatttgatTTATGAGGTAAATCTAAGATGTAAGAAACTAT
ACTTAATATTATCATTTATAACAGACCTGGCGGAagtggggagactgggg
agacttcagcctccccacgtttgagcaaatgagatttttttctcaaattc
cgagcaaattttatctcattttgagccctCAGCCTGCCCACtttaacggt
tgttccgccgggcctgtatAAAAACTACATTTGATATATCGAAAAATTCC
AATGCGGGAGTTTGAGACAGGATTGTTAAATATTTACTTGTAAATAATAC
ATGCCCCAAATTACTGGTAGTAATATAGTAATATTGTGACTACCAGTCAG
CAATATCAATCgtaaattcaaaaattcttttttaattttcggcCCCCGAA
AGGGCTAGAAAAGAACTATTAGTTGGGAAAGGAAGCCATGTATTTCCCTG
CCAAAACGCGTGGTACACACTTCTCCTAAACCTAAGATGACTTAACTTTT
CAGCATTTTAAAAGAATCTGCTTAATGCTACACACGTtgttttatgagaa
caaactatataagaaaataaggcttAGACGTATAGCCAAATATGGgataa
aagttaagaatattttaaggcttcgcagactctaaaacacccaatttctt
agtaAAAAGCGCAAAAATACtgtgaaaaaatgtttaacataagaacattt
aggaaCATTCTTAGGCTTACGTAAATGTTAAAAACGCATCAAAAGGGCCA
AAGAATTTAAAGCGTTCTATTCAAAACGTGTAATATCTAACAACGGTACA
GCATCCTTAGTGGGTTGTTACCATAACTCGAACGATTTCCCCTCTTTTAG
TTACggtcgagttatagagactccactgtttATTTGTTTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000279-exon-sc0000001-1491911889:263026..265667 | TCONS_00000279-exon-sc0000001-1491911889:263026..265667 | Clytia hemisphaerica | exon |
| TCONS_00000279-exon-sc0000001-1510915933:263026..265667 | TCONS_00000279-exon-sc0000001-1510915933:263026..265667 | Clytia hemisphaerica | exon |
| TCONS_00000279-exon-sc0000001-1575043694:263026..265667 | TCONS_00000279-exon-sc0000001-1575043694:263026..265667 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:263026..265667 . |
Blast
The following BLAST results are available for this feature:
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