TCONS_00000277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000277
Unique NameTCONS_00000277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000277 ID=TCONS_00000277|Name=TCONS_00000277|organism=Clytia hemisphaerica|type=transcript|length=314bp
GTCTCAGTGTTCGGAGTGCCATATTTTTTTGGTTCCAAATTGGTTTTAGT
TATACTTTGAATGCGTAACGTTActtctttgataaacttttAGAATGCAT
TAAGTTTTGTAAGTTTATACTAGTTCTTTTGGCAAGATTTTCTCCAAAAA
CAgccactttttcaaaaaaaatggtgTGTTTTGCAACTTAAGACCTCCGC
GCGGtgagtttttttaatttgcatggaaaacttttctcaaaaagttaaaa
atgctTGATCAATAAAGTCGCTGGTTGTTCTACTTTGGAAAACGTCCATT
CTGGGTAATGCTAG
Run BLAST on NCBI

transcript from alignment at sc0000001:102854..103167

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000277 ID=TCONS_00000277|Name=TCONS_00000277|organism=Clytia hemisphaerica|type=transcript|length=314bp|location=Sequence derived from alignment at sc0000001:102854..103167 (Clytia hemisphaerica)
CTAGCATTACCCAGAATGGACGTTTTCCAAAGTAGAACAACCAGCGACTT
TATTGATCAagcatttttaactttttgagaaaagttttccatgcaaatta
aaaaaactcaCCGCGCGGAGGTCTTAAGTTGCAAAACAcaccattttttt
tgaaaaagtggcTGTTTTTGGAGAAAATCTTGCCAAAAGAACTAGTATAA
ACTTACAAAACTTAATGCATTCTaaaagtttatcaaagaagTAACGTTAC
GCATTCAAAGTATAACTAAAACCAATTTGGAACCAAAAAAATATGGCACT
CCGAACACTGAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000152XLOC_000152Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000277-exon-sc0000001-1491911889:102854..103167TCONS_00000277-exon-sc0000001-1491911889:102854..103167Clytia hemisphaericaexon
TCONS_00000277-exon-sc0000001-1510915933:102854..103167TCONS_00000277-exon-sc0000001-1510915933:102854..103167Clytia hemisphaericaexon
TCONS_00000277-exon-sc0000001-1575043694:102854..103167TCONS_00000277-exon-sc0000001-1575043694:102854..103167Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:102854..103167 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.39132	5.59984	6.88442	8.60625	0.455534	0.359969	0.868575	0.406575	0.569305	0	0.684461	0	0.449312	0.699923	0	0.411684	1.2679	1.29956	0.359083	0.375754	0.653197	0.95582	1.16192	1.40848	0	0.323678	0.463183	0.988642	1.4997	0.763979
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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