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TCONS_00000277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000277
Unique NameTCONS_00000277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000277 ID=TCONS_00000277|Name=TCONS_00000277|organism=Clytia hemisphaerica|type=transcript|length=314bp
GTCTCAGTGTTCGGAGTGCCATATTTTTTTGGTTCCAAATTGGTTTTAGT
TATACTTTGAATGCGTAACGTTActtctttgataaacttttAGAATGCAT
TAAGTTTTGTAAGTTTATACTAGTTCTTTTGGCAAGATTTTCTCCAAAAA
CAgccactttttcaaaaaaaatggtgTGTTTTGCAACTTAAGACCTCCGC
GCGGtgagtttttttaatttgcatggaaaacttttctcaaaaagttaaaa
atgctTGATCAATAAAGTCGCTGGTTGTTCTACTTTGGAAAACGTCCATT
CTGGGTAATGCTAG
Run BLAST on NCBI

transcript from alignment at sc0000001:102854..103167

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000277 ID=TCONS_00000277|Name=TCONS_00000277|organism=Clytia hemisphaerica|type=transcript|length=314bp|location=Sequence derived from alignment at sc0000001:102854..103167 (Clytia hemisphaerica)
CTAGCATTACCCAGAATGGACGTTTTCCAAAGTAGAACAACCAGCGACTT TATTGATCAagcatttttaactttttgagaaaagttttccatgcaaatta aaaaaactcaCCGCGCGGAGGTCTTAAGTTGCAAAACAcaccattttttt tgaaaaagtggcTGTTTTTGGAGAAAATCTTGCCAAAAGAACTAGTATAA ACTTACAAAACTTAATGCATTCTaaaagtttatcaaagaagTAACGTTAC GCATTCAAAGTATAACTAAAACCAATTTGGAACCAAAAAAATATGGCACT CCGAACACTGAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000152XLOC_000152Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000277-exon-sc0000001-1491911889:102854..103167TCONS_00000277-exon-sc0000001-1491911889:102854..103167Clytia hemisphaericaexon
TCONS_00000277-exon-sc0000001-1510915933:102854..103167TCONS_00000277-exon-sc0000001-1510915933:102854..103167Clytia hemisphaericaexon
TCONS_00000277-exon-sc0000001-1575043694:102854..103167TCONS_00000277-exon-sc0000001-1575043694:102854..103167Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:102854..103167 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.39132 5.59984 6.88442 8.60625 0.455534 0.359969 0.868575 0.406575 0.569305 0 0.684461 0 0.449312 0.699923 0 0.411684 1.2679 1.29956 0.359083 0.375754 0.653197 0.95582 1.16192 1.40848 0 0.323678 0.463183 0.988642 1.4997 0.763979
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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