TCONS_00000275 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000275
Unique NameTCONS_00000275
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000275 ID=TCONS_00000275|Name=TCONS_00000275|organism=Clytia hemisphaerica|type=transcript|length=1241bp
attcatATTAAGATTTGCTCGAGTATTAAGCGAGAAATCAATAACTAGCA
GCTGCCGCTACAGTAcaacttttttacaagaaaaacaaGACAAATCAAAA
TGTGAATATTAAATGGTTGGTGACtggaaataaaatttccaaaaaatcaa
tgGTGTTGAATCATGCTGGCCGATGGTTATGATCTCCATGCAAGTTTTTA
CTACCATTGTTTACATTGACGTTATTCAACATTGGTCATTGTGCGCCATC
CATGCCCCATGACGGCATGAAACACCATGAAACTTATTGGACTTTTATAC
GATACAGTCTGTACAGTCTGATTATCATATCAGCTTTTTATCACAGATGT
ATATATGTATTGTATGTAAATACTTATTGATATACAGTTAAACAAAATTG
ATGTatggcaaaaacaaaacagagcaAACGTTGGATTGGTCAGGTGACGC
TATAAAAGTCAAGCttttgaaagtttcaagtcaTATCATATCCAATCAAA
CAGAATGGACAATCAAATTGAATTGTAAATTTCCTGACGAAACTCTATAA
ATTTGATTGCACTTTTGGTGTATCATTGAAGGTTTAAAGGTTCAGGTGTA
AATGGAATGCTTAAACGACCAAAGATGTTTGAGATATGTGACCTCCCGGA
TGTAGTGACTCGTTCGATTTCCGATAACTTTACAGATTTTACTGACGACA
GTCATTGTTTACCAATACCTAGATTGGTTTAAGCcacaatcacaaataac
ttgtgtttgtCGTCCGACCGACTGATAATTTCTGgaaaaattcctttcaa
aatataACGGAGATATTGAGGTTCCTATCCGTTGGTGCATGGATGTAGGT
CTTCTCCACCGTATattttttcttgagaagttgttcttcaaattagtttt
caaggttggctcagctcaaattttttcatctatagctcaaaattttggta
atttctcataaaaatattaatttcattaaaaagcgtcAGTATATTTTCTA
TGAATCCTATTAGAAGTTTTGCGACGCATTTTCTTGCTTCAAGTAACCGA
TATAGTGCAAAAtggcagcattaatctttgatacgcatttcggTAGGATG
CTAATGTGACTAACTGTTTGTGGGAAATCTTTTGACTACCTTTCTTAATA
TACTATTAATTGAAATCTTAAACAAAATTAGAATGCCATACTTTTTTTGT
GAATTCTGTCCAAATTGTCAACATTGAAATTTCTCGGTAGA
Run BLAST on NCBI

transcript from alignment at sc0000001:42857..44097

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000275 ID=TCONS_00000275|Name=TCONS_00000275|organism=Clytia hemisphaerica|type=transcript|length=1241bp|location=Sequence derived from alignment at sc0000001:42857..44097 (Clytia hemisphaerica)
TCTACCGAGAAATTTCAATGTTGACAATTTGGACAGAATTCACAAAAAAA GTATGGCATTCTAATTTTGTTTAAGATTTCAATTAATAGTATATTAAGAA AGGTAGTCAAAAGATTTCCCACAAACAGTTAGTCACATTAGCATCCTAcc gaaatgcgtatcaaagattaatgctgccaTTTTGCACTATATCGGTTACT TGAAGCAAGAAAATGCGTCGCAAAACTTCTAATAGGATTCATAGAAAATA TACTgacgctttttaatgaaattaatatttttatgagaaattaccaaaat tttgagctatagatgaaaaaatttgagctgagccaaccttgaaaactaat ttgaagaacaacttctcaagaaaaaatATACGGTGGAGAAGACCTACATC CATGCACCAACGGATAGGAACCTCAATATCTCCGTtatattttgaaagga atttttcCAGAAATTATCAGTCGGTCGGACGacaaacacaagttatttgt gattgtgGCTTAAACCAATCTAGGTATTGGTAAACAATGACTGTCGTCAG TAAAATCTGTAAAGTTATCGGAAATCGAACGAGTCACTACATCCGGGAGG TCACATATCTCAAACATCTTTGGTCGTTTAAGCATTCCATTTACACCTGA ACCTTTAAACCTTCAATGATACACCAAAAGTGCAATCAAATTTATAGAGT TTCGTCAGGAAATTTACAATTCAATTTGATTGTCCATTCTGTTTGATTGG ATATGATAtgacttgaaactttcaaaaGCTTGACTTTTATAGCGTCACCT GACCAATCCAACGTTtgctctgttttgtttttgccatACATCAATTTTGT TTAACTGTATATCAATAAGTATTTACATACAATACATATATACATCTGTG ATAAAAAGCTGATATGATAATCAGACTGTACAGACTGTATCGTATAAAAG TCCAATAAGTTTCATGGTGTTTCATGCCGTCATGGGGCATGGATGGCGCA CAATGACCAATGTTGAATAACGTCAATGTAAACAATGGTAGTAAAAACTT GCATGGAGATCATAACCATCGGCCAGCATGATTCAACACcattgattttt tggaaattttatttccaGTCACCAACCATTTAATATTCACATTTTGATTT GTCttgtttttcttgtaaaaaagttgTACTGTAGCGGCAGCTGCTAGTTA TTGATTTCTCGCTTAATACTCGAGCAAATCTTAATatgaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000150XLOC_000150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000275-exon-sc0000001-1491911889:42857..44097TCONS_00000275-exon-sc0000001-1491911889:42857..44097Clytia hemisphaericaexon
TCONS_00000275-exon-sc0000001-1510915933:42857..44097TCONS_00000275-exon-sc0000001-1510915933:42857..44097Clytia hemisphaericaexon
TCONS_00000275-exon-sc0000001-1575043694:42857..44097TCONS_00000275-exon-sc0000001-1575043694:42857..44097Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:42857..44097 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.10754 2.87368 1.6749 0.832949 16.0165 13.3561 17.6073 20.5151 12.7387 11.1596 10.8922 9.52685 8.18438 7.64085 7.27288 8.17238 9.20454 10.1166 3.86614 5.05111 6.10368 6.17315 3.26816 4.16475 9.28716 12.1273 3.65529 2.71671 1.78846 1.54336
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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