TCONS_00000274 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000274
Unique NameTCONS_00000274
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000274 ID=TCONS_00000274|Name=TCONS_00000274|organism=Clytia hemisphaerica|type=transcript|length=2401bp
AGATGAAGCTATTGGAGGGTTTTATGGTTTTGAACCTGAGTATTCAAAAA
AAGAGCTAGCGATCCTGTCAGCAAAGCACAAGGAAGATGAAAGCTCGTCT
TCAAGTGATAGCGAACGGGAAAATGATGACCTGGAGTCAAGTAGACTTGA
GAACTTGCATTGGTGCACTTGTAGAAACTGTGTAATTGGCACCGATTTCA
CTTTAGAAGAATGTCTCTGTTGCAAAGAATGTAGTATTCTCGAAGAAAAA
CTTAAAGGCATATCTTGTATTACAAAACACAAAGACTTCAAACCTTTCAT
TCTCACCCCATCAGCCCTTGAGTTCACCTTTATAACAAGAAGGAGAcata
agaaaattttcaaaagaatcaaaaaaattaaaaacagGCAATATCGTTAC
ACTGCGTATTACCAATACACATCGTGGACACATTATTTCGAAATACTTGG
GCGTGACAAAAGAGTGGTGATCCCATCTTGTGTcgtgaaagaaataaaaa
acacgTTCCCTGAGTCTATTGGTGGAAAATATACTGGTTTCAAAAGAGCT
TCATTGAGCAACTAGACTTATAATCTTTTGTGAAGATACAGTATAGATag
atatataatataaaaggaattttgaaatgtttttccaAAACCAATTGTCT
TTCTGGACGTTCTGTAAATGCAATGTTTTTTGGGCTTACGAGTCTATTCG
CTAATTCAGAGGCTTTTTGGTCAATCTTCTCtcctttttctttccttttt
ataACCTCAGTTAAAAGTGTTTTCACGAAATCGTAAGACTTTGCTTCCTT
CTTCTCTTTGGCCACCCAATCTTTTGACAACTTTGAAGAGACGATTTTCC
ACTGTTTTTCTCCCTTTTTCCCTGATCCTTTACGCTCGGAGGTAATGACT
GCTTGCTGCCTGCCCACGTTGCTATTGTGATCAATTACGGCTACTTTCAC
CCGTGCATCCATCACGTTCAGCTCAAATTCCAATCTTTTTGGGGTGTAAG
AATTAACGAGCGAATGGAATACTTCGATACTCCCGGTGTGTAATGGATTG
ACGAGATGATCCATGTCATTGAGGGTTTTGCTTTCTGTCACGACATTTTC
TAATGCATCATACGCTACCGAATCTTTCACGATCCATTTTTTCTGTGCAG
TCTCCTTCCTTTTCAATGATTTATGGCAGCACTTGGGGTATTTGGGGTAA
GCCCTCTTAAATCGATGACGATTTGTGACGTGGTGCAACAGAGATTTCCA
CATTTGCTTCAAGGTTTCAGCATCTCCCTTACAATTTTCGGCACACCAAA
ATAGGTGATTTCCGATCTGTCAAATCCACTCTTGGATTACTTTGCAACCT
TTTCGTTTAGACACTTTCCTCAATTTTGAAGTGATATTCTTCGAAAAATG
CCAGGTATCATACTTTCTGATTATACGGGCACGATTTTCTCTCAGCCATT
TTGCCAATTGCATGTTCCTATCAGTAGCTATCTTCTTAACCTTGAAACCA
CTGCTCTCTAAATCggtcaaacaatttttaaaaccttCAAGTTCAAGAGG
CGCAGAGCCTTTGCCTTTTGAAGTTTGGACTGTTGAGGTGGCGATAATCT
TTTTGGTCTCGGGTGATTGGCATGTGTACGTGCAGTACTTCGCTGATTTT
CCTGGTGAATCGAATCGACCATCCCCTACAATTTCAAGATCtgctttggt
ttttatttctgcTCTTGCTTCCTCtatattttgtttgaaaacttGGTTGA
CACTAGGTATTACAAGTACACGTTGAATCTTGTAGAAGGTATTAGCATTT
ACAAAATTCAGTCCGGAAAAGCTCACAGGTTTTCTAATGCTTTCAAAATT
CGATCCAGAAAAAAATACAGAGGCGGAAATCAACAAATTAAAAGCAGGCA
TTTTCCCAATCAATGGTTGGCTCATCCAATCAATTATGACATGTTCGTTG
TCACAAAAGATTTTATAGTGAATACTAGTTCCTAgcttaattttcttaat
ttcgTCGACAGGTAGTGCACAAACCTTGCAACGTAAGCATGAAACAAGTT
GATCCAGCATTCCTTCGTAAACGACAAATTTTTCATCGTTTAAAATATCG
ATTTTCACCTCTTCTCGGTTAGAGTTTTCGATGACAGAAGGCTCATAATC
AGGGTCATCTTTATCGTGAACAAATGAGAGATCGGGTTGGGAGATGGAAT
CTTGACTTGCATTTTTGATAGGACTTGACGAAGTTGGCCATAGAATATCT
TCCGTTTGTGTACCGACTTCATTGGTTTTTCTTACGTCACTGCTGGTTTC
GACTATCTCCTTTTCAATTGGACTTTCGTTTTGATTCACTGTCTCCTCAG
GTGCGTCGTTCGTATCGGATGGTTCGATATTTTCTTGATTTACGATCCTC
T
Run BLAST on NCBI

transcript from alignment at sc0000001:2867692..2870263-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000274 ID=TCONS_00000274|Name=TCONS_00000274|organism=Clytia hemisphaerica|type=transcript|length=2572bp|location=Sequence derived from alignment at sc0000001:2867692..2870263- (Clytia hemisphaerica)
AGATGAAGCTATTGGAGGGTTTTATGGTTTTGAACCTGAGTATTCAAAAA
AAGAGCTAGCGATCCTGTCAGCAAAGCACAAGGAAGATGAAAGCTCGTCT
TCAAGTGATAGCGAACGGGAAAATGATGACCTGGAGTCAAGTAGACTTGA
GAACTTGCATTGGTGCACTTGTAGAAACTGTGTAATTGGCACCGATTTCA
CTTTAGAAGAATGTCTCTGTTGCAAAGAATGTAGTATTCTCGAAGAAAAA
CTTAAAGGCATATCTTGTATTACAAAACACAAAGACTTCAAACCTTTCAT
TCTCACCCCATCAGCCCTTGAGTTCACCTTTATAACAAGAAGGAGACATA
AGAAAATTTTCAAAAGAATCAAAAAAATTAAAAACAGGTAAATTTGATTG
GGTTTTACTTAATACATCATAGATCGTAAAATAGTTCGTAAATCTATAAA
AATAGTTTGTAAATCTAGCAAAATGAAGATTCTAAATAAATTTATTGAAT
CAATTCTAGGCAAGAGTTCAAATAGAAAACCAGTCTTTGTTTTCTTTTAT
TTCTACAGGCAATATCGTTACACTGCGTATTACCAATACACATCGTGGAC
ACATTATTTCGAAATACTTGGGCGTGACAAAAGAGTGGTGATCCCATCTT
GTGTCGTGAAAGAAATAAAAAACACGTTCCCTGAGTCTATTGGTGGAAAA
TATACTGGTTTCAAAAGAGCTTCATTGAGCAACTAGACTTATAATCTTTT
GTGAAGATACAGTATAGATAGATATATAATATAAAAGGAATTTTGAAATG
TTTTTCCAAAACCAATTGTCTTTCTGGACGTTCTGTAAATGCAATGTTTT
TTGGGCTTACGAGTCTATTCGCTAATTCAGAGGCTTTTTGGTCAATCTTC
TCTCCTTTTTCTTTCCTTTTTATAACCTCAGTTAAAAGTGTTTTCACGAA
ATCGTAAGACTTTGCTTCCTTCTTCTCTTTGGCCACCCAATCTTTTGACA
ACTTTGAAGAGACGATTTTCCACTGTTTTTCTCCCTTTTTCCCTGATCCT
TTACGCTCGGAGGTAATGACTGCTTGCTGCCTGCCCACGTTGCTATTGTG
ATCAATTACGGCTACTTTCACCCGTGCATCCATCACGTTCAGCTCAAATT
CCAATCTTTTTGGGGTGTAAGAATTAACGAGCGAATGGAATACTTCGATA
CTCCCGGTGTGTAATGGATTGACGAGATGATCCATGTCATTGAGGGTTTT
GCTTTCTGTCACGACATTTTCTAATGCATCATACGCTACCGAATCTTTCA
CGATCCATTTTTTCTGTGCAGTCTCCTTCCTTTTCAATGATTTATGGCAG
CACTTGGGGTATTTGGGGTAAGCCCTCTTAAATCGATGACGATTTGTGAC
GTGGTGCAACAGAGATTTCCACATTTGCTTCAAGGTTTCAGCATCTCCCT
TACAATTTTCGGCACACCAAAATAGGTGATTTCCGATCTGTCAAATCCAC
TCTTGGATTACTTTGCAACCTTTTCGTTTAGACACTTTCCTCAATTTTGA
AGTGATATTCTTCGAAAAATGCCAGGTATCATACTTTCTGATTATACGGG
CACGATTTTCTCTCAGCCATTTTGCCAATTGCATGTTCCTATCAGTAGCT
ATCTTCTTAACCTTGAAACCACTGCTCTCTAAATCGGTCAAACAATTTTT
AAAACCTTCAAGTTCAAGAGGCGCAGAGCCTTTGCCTTTTGAAGTTTGGA
CTGTTGAGGTGGCGATAATCTTTTTGGTCTCGGGTGATTGGCATGTGTAC
GTGCAGTACTTCGCTGATTTTCCTGGTGAATCGAATCGACCATCCCCTAC
AATTTCAAGATCTGCTTTGGTTTTTATTTCTGCTCTTGCTTCCTCTATAT
TTTGTTTGAAAACTTGGTTGACACTAGGTATTACAAGTACACGTTGAATC
TTGTAGAAGGTATTAGCATTTACAAAATTCAGTCCGGAAAAGCTCACAGG
TTTTCTAATGCTTTCAAAATTCGATCCAGAAAAAAATACAGAGGCGGAAA
TCAACAAATTAAAAGCAGGCATTTTCCCAATCAATGGTTGGCTCATCCAA
TCAATTATGACATGTTCGTTGTCACAAAAGATTTTATAGTGAATACTAGT
TCCTAGCTTAATTTTCTTAATTTCGTCGACAGGTAGTGCACAAACCTTGC
AACGTAAGCATGAAACAAGTTGATCCAGCATTCCTTCGTAAACGACAAAT
TTTTCATCGTTTAAAATATCGATTTTCACCTCTTCTCGGTTAGAGTTTTC
GATGACAGAAGGCTCATAATCAGGGTCATCTTTATCGTGAACAAATGAGA
GATCGGGTTGGGAGATGGAATCTTGACTTGCATTTTTGATAGGACTTGAC
GAAGTTGGCCATAGAATATCTTCCGTTTGTGTACCGACTTCATTGGTTTT
TCTTACGTCACTGCTGGTTTCGACTATCTCCTTTTCAATTGGACTTTCGT
TTTGATTCACTGTCTCCTCAGGTGCGTCGTTCGTATCGGATGGTTCGATA
TTTTCTTGATTTACGATCCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000149XLOC_000149Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000274-exon-sc0000001-1575043694:2869877..2870263TCONS_00000274-exon-sc0000001-1575043694:2869877..2870263Clytia hemisphaericaexon
TCONS_00000274-exon-sc0000001-1575043694:2867692..2869705TCONS_00000274-exon-sc0000001-1575043694:2867692..2869705Clytia hemisphaericaexon
TCONS_00000274-exon-sc0000001-1510915933:2869877..2870263TCONS_00000274-exon-sc0000001-1510915933:2869877..2870263Clytia hemisphaericaexon
TCONS_00000274-exon-sc0000001-1510915933:2867692..2869705TCONS_00000274-exon-sc0000001-1510915933:2867692..2869705Clytia hemisphaericaexon
TCONS_00000274-exon-sc0000001-1491911889:2869877..2870263TCONS_00000274-exon-sc0000001-1491911889:2869877..2870263Clytia hemisphaericaexon
TCONS_00000274-exon-sc0000001-1491911889:2867692..2869705TCONS_00000274-exon-sc0000001-1491911889:2867692..2869705Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2867692..2870263 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.13691	1.16326	1.41879	1.33465	0.79008	0.493427	1.03331	0.295984	0.679745	0.504205	0.79702	0.829686	0.49904	0.726041	0.43902	0.307382	0.427515	0.20107	0.285485	0.31526	0.379809	0.544467	0.336843	0.247983	0.862989	0.685974
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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