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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000273 ID=TCONS_00000273|Name=TCONS_00000273|organism=Clytia hemisphaerica|type=transcript|length=1381bp
CTTCGCTCGAATCCGGGAATTATGAATCGTCCCACTAATGAACTTTTGGC
GCTAATGAGATCACTTGCCGTTGTTGCTGTTGCCACTTGTGTCACCAGGA
CCGAGCTGATGAACATGACTTAACAGCGTGATGAACAATTTCGTATATTT
GCCTCTCGTGTCAGAGGAAAGGCAGTGACTTGTAATTATAAGACGAAATG
TACGTGCAATAACACTGTTGATTTCACGGATTCTATTATTAGAGATATTT
TGATAGCGGGTATTGTAGATTCTGATATTCGTCGAGAGATACAGGTGTGA
AAGACATACTAGATACACCTATCAATGACATTATCGCACTTGTTGAAAGC
AAGGAGATGGCACGCGATGCGCTTCCCCTGCCAGTTGGGAGTGTATCATC
CTCTTCCTATCGTCGCAACAGATCGAAACAAGTCGAAACACCTCAGACCG
ACATTCCTGTTCCTTGCCCTGGATGCCAGAAGCCATTCCTGCGTTTCAGT
GAAGGTCGAAATGGTCGCAATAAGAAACCTCACAAGCTCTGCATCGAATG
TTACCGTATCCAACGTCGCCAAGATAAAACCAATTCCAATCCGCCGGCCA
AGCCAGACGCATCAAATACTGCCGGTGTTGGTACCATGTTTAGTCAAGTA
TCAGGAATCACCACTGCGAGATCAGATCCTACTTCTGTTGCCGACCAAAA
TGCAATTGCTTCACCTCACAGTATATTTACCAAGGGCCAGTGGCGGAAGT
CGAAGTTCAAAAATCACCCTAGGGGAGAACTCTTATTATCTGTTCTGTCA
TCTGATTATAAACAGTTCAGTAAAAGATGCCCTAACGTTGCTCCTACCAA
AATCACAGCACTGGCCGATACCGGTGCTCAGTCTTGTCTTTGGTCGCTGA
GAGAATTCGAGTCACTTGGCTTCacgaaaaatgatttgattccCGTTAAC
ATCAACCTCATGGCTGCAAACAAGTCACTCATAACCGTTGAAGGAGCTGC
TTGCGTTCTATTAGAGGGTGTCGCATCAGACGGCTCCAAGCAGTCCTGCT
CCACTATGGTTTATATCAGTCGGCAGGCACAGGGATTCTACCTTTCGCTG
GAGAACATGATGGAACTGGGTATAGTTCCAAGAGACTTTCCTTCCCTTAA
ACCGTTGTCATCGATCGATCAAGTTGGTCACACCACGAGCACCGTTGATA
TCGATTCCATCAAGGAAAAGAGTTGCTCCTGCTCGTACTCGCACACCCGT
TCCAGAAATGCCCAAAGAGTTACCGTTCGATTGCGTGCCTGAGAACAATG
ACAAGATGAAAAAGTGGATTCTAGAACATTTCGCTTCTTCCACTTTTAAC
ACCTGCCCTCATCAGACCCTCGAGAAAATAG Run BLAST on NCBI protein sequence of TCONS_00000273-protein >TCONS_00000273-protein ID=TCONS_00000273-protein|Name=TCONS_00000273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MARDALPLPVGSVSSSSYRRNRSKQVETPQTDIPVPCPGCQKPFLRFSEG
RNGRNKKPHKLCIECYRIQRRQDKTNSNPPAKPDASNTAGVGTMFSQVSG
ITTARSDPTSVADQNAIASPHSIFTKGQWRKSKFKNHPRGELLLSVLSSD
YKQFSKRCPNVAPTKITALADTGAQSCLWSLREFESLGFTKNDLIPVNIN
LMAANKSLITVEGAACVLLEGVASDGSKQSCSTMVYISRQAQGFYLSLEN
MMELGIVPRDFPSLKPLSSIDQVGHTTSTVDIDSIKEKSCSCSYSHTRSR
NAQRVTVRLRA Run BLAST on NCBI transcript from alignment at sc0000001:2783390..2784823- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000273 ID=TCONS_00000273|Name=TCONS_00000273|organism=Clytia hemisphaerica|type=transcript|length=1434bp|location=Sequence derived from alignment at sc0000001:2783390..2784823- (Clytia hemisphaerica)
CTTCGCTCGAATCCGGGAATTATGAATCGTCCCACTAATGAACTTTTGGC
GCTAATGAGATCACTTGCCGTTGTTGCTGTTGCCACTTGTGTCACCAGGA
CCGAGCTGATGAACATGACTTAACAGCGTGATGAACAATTTCGTATATTT
GCCTCTCGTGTCAGAGGAAAGGCAGTGACTTGTAATTATAAGACGAAATG
TACGTGCAATAACACTGTTGATTTCACGGATTCTATTATTAGAGATATTT
TGATAGCGGGTATTGTAGATTCTGATATTCGTCGAGAGATACAGGTGTGA
AAGACATACTAGATACACCTATCAATGACATTATCGCACTTGTTGAAAGC
AAGGAGATGGCACGCGATGCGCTTCCCCTGCCAGTTGGGAGTGTATCATC
CTCTTCCTATCGTCGCAACAGATCGAAACAAGTCGAAACACCTCAGACCG
ACATTCCTGTTCCTTGCCCTGGATGCCAGAAGCCATTCCTGCGTTTCAGT
GAAGGTCGAAATGGTCGCAATAAGAAACCTCACAAGCTCTGCATCGAATG
TTACCGTATCCAACGTCGCCAAGATAAAACCAATTCCAATCCGCCGGCCA
AGCCAGACGCATCAAATACTGCCGGTGTTGGTACCATGTTTAGTCAAGTA
TCAGGAATCACCACTGCGAGATCAGATCCTACTTCTGTTGCCGACCAAAA
TGCAATTGCTTCACCTCACAGTATATTTACCAAGGGCCAGTGGCGGAAGT
CGAAGTTCAAAAATCACCCTAGGGGAGAACTCTTATTATCTGTTCTGTCA
TCTGATTATAAACAGTTCAGTAAAAGATGCCCTAACGTTGCTCCTACCAA
AATCACAGCACTGGCCGATACCGGTGCTCAGTCTTGTCTTTGGTCGCTGA
GAGAATTCGAGTCACTTGGCTTCACGAAAAATGATTTGATTCCCGTTAAC
ATCAACCTCATGGCTGCAAACAAGTCACTCATAACCGTTGAAGGAGCTGC
TTGCGTTCTATTAGAGGGTGTCGCATCAGACGGCTCCAAGCAGTCCTGCT
CCACTATGGTTTATATCAGTCGGCAGGCACAGGGATTCTACCTTTCGCTG
GAGAACATGATGGAACTGGGTATAGTCCCGAGAGNGGATTCTACCTTTCG
CTGGAGAACATGATGGAACTGGGTATAGTTCCAAGAGACTTTCCTTCCCT
TAAACCGTTGTCATCGATCGATCAAGTTGGTCACACCACGAGCACCGTTG
ATATCGATTCCATCAAGGAAAAGAGTTGCTCCTGCTCGTACTCGCACACC
CGTTCCAGAAATGCCCAAAGAGTTACCGTTCGATTGCGTGCCTGAGAACA
ATGACAAGATGAAAAAGTGGATTCTAGAACATTTCGCTTCTTCCACTTTT
AACACCTGCCCTCATCAGACCCTCGAGAAAATAG Coding sequence (CDS) from alignment at sc0000001:2783390..2784823- >TCONS_00000273 ID=TCONS_00000273|Name=TCONS_00000273|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000001:2783390..2784823- (Clytia hemisphaerica)
ATGATGGAACTGGGTATAGTTCCAAGAGACTTTCCTTCCCTTAAACCGTT
GTCATCGATCGATCAAGTTGGTCACACCACGAGCACCGTTGATATCGATT
CCATCAAGGAAAAGAGTTGCTCCTGCTCGTACTCGCACACCCGTTCCAGA
AATGCCCAAAGAGTTACCGTTCGATTGCGTGCCTGAATGGCACGCGATGC
GCTTCCCCTGCCAGTTGGGAGTGTATCATCCTCTTCCTATCGTCGCAACA
GATCGAAACAAGTCGAAACACCTCAGACCGACATTCCTGTTCCTTGCCCT
GGATGCCAGAAGCCATTCCTGCGTTTCAGTGAAGGTCGAAATGGTCGCAA
TAAGAAACCTCACAAGCTCTGCATCGAATGTTACCGTATCCAACGTCGCC
AAGATAAAACCAATTCCAATCCGCCGGCCAAGCCAGACGCATCAAATACT
GCCGGTGTTGGTACCATGTTTAGTCAAGTATCAGGAATCACCACTGCGAG
ATCAGATCCTACTTCTGTTGCCGACCAAAATGCAATTGCTTCACCTCACA
GTATATTTACCAAGGGCCAGTGGCGGAAGTCGAAGTTCAAAAATCACCCT
AGGGGAGAACTCTTATTATCTGTTCTGTCATCTGATTATAAACAGTTCAG
TAAAAGATGCCCTAACGTTGCTCCTACCAAAATCACAGCACTGGCCGATA
CCGGTGCTCAGTCTTGTCTTTGGTCGCTGAGAGAATTCGAGTCACTTGGC
TTCACGAAAAATGATTTGATTCCCGTTAACATCAACCTCATGGCTGCAAA
CAAGTCACTCATAACCGTTGAAGGAGCTGCTTGCGTTCTATTAGAGGGTG
TCGCATCAGACGGCTCCAAGCAGTCCTGCTCCACTATGGTTTATATCAGT
CGGCAGGCACAGGGATTCTACCTTTCGCTGGAGAACATGATGGAACTGGG
TATAGTTCCAAGAGACTTTCCTTCCCTTAAACCGTTGTCATCGATCGATC
AAGTTGGTCACACCACGAGCACCGTTGATATCGATTCCATCAAGGAAAAG
AGTTGCTCCTGCTCGTACTCGCACACCCGTTCCAGAAATGCCCAAAGAGT
TACCGTTCGATTGCGTGCCTGAATGGCACGCGATGCGCTTCCCCTGCCAG
TTGGGAGTGTATCATCCTCTTCCTATCGTCGCAACAGATCGAAACAAGTC
GAAACACCTCAGACCGACATTCCTGTTCCTTGCCCTGGATGCCAGAAGCC
ATTCCTGCGTTTCAGTGAAGGTCGAAATGGTCGCAATAAGAAACCTCACA
AGCTCTGCATCGAATGTTACCGTATCCAACGTCGCCAAGATAAAACCAAT
TCCAATCCGCCGGCCAAGCCAGACGCATCAAATACTGCCGGTGTTGGTAC
CATGTTTAGTCAAGTATCAGGAATCACCACTGCGAGATCAGATCCTACTT
CTGTTGCCGACCAAAATGCAATTGCTTCACCTCACAGTATATTTACCAAG
GGCCAGTGGCGGAAGTCGAAGTTCAAAAATCACCCTAGGGGAGAACTCTT
ATTATCTGTTCTGTCATCTGATTATAAACAGTTCAGTAAAAGATGCCCTA
ACGTTGCTCCTACCAAAATCACAGCACTGGCCGATACCGGTGCTCAGTCT
TGTCTTTGGTCGCTGAGAGAATTCGAGTCACTTGGCTTCACGAAAAATGA
TTTGATTCCCGTTAACATCAACCTCATGGCTGCAAACAAGTCACTCATAA
CCGTTGAAGGAGCTGCTTGCGTTCTATTAGAGGGTGTCGCATCAGACGGC
TCCAAGCAGTCCTGCTCCACTATGGTTTATATCAGTCGGCAGGCACAGGG
ATTCTACCTTTCGCTGGAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000273-exon-sc0000001-1575043694:2783718..2784823 | TCONS_00000273-exon-sc0000001-1575043694:2783718..2784823 | Clytia hemisphaerica | exon |
| TCONS_00000273-exon-sc0000001-1575043694:2783390..2783664 | TCONS_00000273-exon-sc0000001-1575043694:2783390..2783664 | Clytia hemisphaerica | exon |
| TCONS_00000273-exon-sc0000001-1510915933:2783718..2784823 | TCONS_00000273-exon-sc0000001-1510915933:2783718..2784823 | Clytia hemisphaerica | exon |
| TCONS_00000273-exon-sc0000001-1510915933:2783390..2783664 | TCONS_00000273-exon-sc0000001-1510915933:2783390..2783664 | Clytia hemisphaerica | exon |
| TCONS_00000273-exon-sc0000001-1491911889:2783718..2784823 | TCONS_00000273-exon-sc0000001-1491911889:2783718..2784823 | Clytia hemisphaerica | exon |
| TCONS_00000273-exon-sc0000001-1491911889:2783390..2783664 | TCONS_00000273-exon-sc0000001-1491911889:2783390..2783664 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2783390..2784823 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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